RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 TRAF3IP3Q9Y228 551 aa23.51■■□□□ 1.35
CLN3-207ENST00000395653 ANO9A1A5B4 782 aa23.5■■□□□ 1.35
CLN3-207ENST00000395653 I3L4J1 428 aa23.5■■□□□ 1.35
CLN3-207ENST00000395653 PIRO00625 290 aa23.5■■□□□ 1.35
CLN3-207ENST00000395653 SYN3O14994 580 aa23.5■■□□□ 1.35
CLN3-207ENST00000395653 TEX28O15482 410 aa23.5■■□□□ 1.35
CLN3-207ENST00000395653 EXOC3O60645 756 aa23.5■■□□□ 1.35
CLN3-207ENST00000395653 KLRC2P26717 231 aa23.5■■□□□ 1.35
CLN3-207ENST00000395653 MCM4P33991 863 aa23.5■■□□□ 1.35
CLN3-207ENST00000395653 AARSP49588 968 aaKnown RBP eCLIP23.5■■□□□ 1.35
CLN3-207ENST00000395653 RBM10P98175 930 aaKnown RBP23.5■■□□□ 1.35
CLN3-207ENST00000395653 MYBPC2Q14324 1141 aa23.5■■□□□ 1.35
CLN3-207ENST00000395653 COBLL1Q53SF7 1204 aa23.5■■□□□ 1.35
CLN3-207ENST00000395653 ZNF658Q5TYW1 1059 aaPredicted RBP23.5■■□□□ 1.35
CLN3-207ENST00000395653 C9orf57Q5W0N0 161 aa23.5■■□□□ 1.35
CLN3-207ENST00000395653 LNX1Q8TBB1 728 aaPredicted RBP23.5■■□□□ 1.35
CLN3-207ENST00000395653 SLC22A17Q8WUG5 538 aa23.5■■□□□ 1.35
CLN3-207ENST00000395653 CACTINQ8WUQ7 758 aaKnown RBP23.5■■□□□ 1.35
CLN3-207ENST00000395653 MSLNLQ96KJ4 702 aa23.5■■□□□ 1.35
CLN3-207ENST00000395653 PDE11AQ9HCR9 933 aa23.5■■□□□ 1.35
CLN3-207ENST00000395653 DMAC2Q9NW81 257 aa23.5■■□□□ 1.35
CLN3-207ENST00000395653 BARX2Q9UMQ3 279 aaPredicted RBP23.5■■□□□ 1.35
CLN3-207ENST00000395653 MAPK8IP1Q9UQF2 711 aa23.5■■□□□ 1.35
CLN3-207ENST00000395653 CALUO43852 315 aaPredicted RBP23.5■■□□□ 1.35
CLN3-207ENST00000395653 C1RP00736 705 aa23.5■■□□□ 1.35
CLN3-207ENST00000395653 TKTP29401 623 aaKnown RBP23.5■■□□□ 1.35
CLN3-207ENST00000395653 CLCN4P51793 760 aa23.5■■□□□ 1.35
CLN3-207ENST00000395653 TFAMQ00059 246 aaKnown RBP23.5■■□□□ 1.35
CLN3-207ENST00000395653 PSMD5Q16401 504 aa23.5■■□□□ 1.35
CLN3-207ENST00000395653 LLGL2Q6P1M3 1020 aa23.5■■□□□ 1.35
CLN3-207ENST00000395653 PRSS55Q6UWB4 352 aaPredicted RBP23.5■■□□□ 1.35
CLN3-207ENST00000395653 VWA8A3KMH1 1905 aa23.49■■□□□ 1.35
CLN3-207ENST00000395653 PPEF2O14830 753 aa23.49■■□□□ 1.35
CLN3-207ENST00000395653 NR3C1P04150 777 aa23.49■■□□□ 1.35
CLN3-207ENST00000395653 NFIL3Q16649 462 aa23.49■■□□□ 1.35
CLN3-207ENST00000395653 PUS10Q3MIT2 529 aaKnown RBP23.49■■□□□ 1.35
CLN3-207ENST00000395653 TJAP1Q5JTD0 557 aa23.49■■□□□ 1.35
CLN3-207ENST00000395653 ANKS3Q6ZW76 656 aa23.49■■□□□ 1.35
CLN3-207ENST00000395653 SMYD4Q8IYR2 804 aaPredicted RBP23.49■■□□□ 1.35
CLN3-207ENST00000395653 RDH13Q8NBN7 331 aa23.49■■□□□ 1.35
CLN3-207ENST00000395653 GADD45GIP1Q8TAE8 222 aaPredicted RBP23.49■■□□□ 1.35
CLN3-207ENST00000395653 M0QZQ0 153 aa23.48■■□□□ 1.35
CLN3-207ENST00000395653 HOXB8P17481 243 aaPredicted RBP23.48■■□□□ 1.35
CLN3-207ENST00000395653 KCNQ1P51787 676 aa23.48■■□□□ 1.35
CLN3-207ENST00000395653 CYP24A1Q07973 514 aa23.48■■□□□ 1.35
CLN3-207ENST00000395653 PSMD6Q15008 389 aa23.48■■□□□ 1.35
CLN3-207ENST00000395653 ANKRD54Q6NXT1 300 aa23.48■■□□□ 1.35
CLN3-207ENST00000395653 WDR49Q8IV35 697 aa23.48■■□□□ 1.35
CLN3-207ENST00000395653 MFSD14AQ96MC6 490 aa23.48■■□□□ 1.35
CLN3-207ENST00000395653 INTS13Q9NVM9 706 aa23.48■■□□□ 1.35
CLN3-207ENST00000395653 DZANK1Q9NVP4 752 aa23.48■■□□□ 1.35
CLN3-207ENST00000395653 MTRRQ9UBK8 725 aa23.48■■□□□ 1.35
CLN3-207ENST00000395653 CD207Q9UJ71 328 aa23.48■■□□□ 1.35
CLN3-207ENST00000395653 TMEM191BP0C7N4 346 aa23.47■■□□□ 1.35
CLN3-207ENST00000395653 EPCAMP16422 314 aa23.47■■□□□ 1.35
CLN3-207ENST00000395653 RPL17P18621 184 aaKnown RBP23.47■■□□□ 1.35
CLN3-207ENST00000395653 LILRA4P59901 499 aa23.47■■□□□ 1.35
CLN3-207ENST00000395653 ZCWPW2Q504Y3 356 aa23.47■■□□□ 1.35
CLN3-207ENST00000395653 C1orf127Q8N9H9 656 aa23.47■■□□□ 1.35
CLN3-207ENST00000395653 APPL2Q8NEU8 664 aa23.47■■□□□ 1.35
CLN3-207ENST00000395653 MAN1B1Q9UKM7 699 aa23.47■■□□□ 1.35
CLN3-207ENST00000395653 ITGA11Q9UKX5 1188 aa23.47■■□□□ 1.35
CLN3-207ENST00000395653 PCDHB8Q9UN66 801 aa23.47■■□□□ 1.35
CLN3-207ENST00000395653 BACE2Q9Y5Z0 518 aa23.47■■□□□ 1.35
CLN3-207ENST00000395653 TULP1O00294 542 aaPredicted RBP23.46■■□□□ 1.35
CLN3-207ENST00000395653 GLUD1P00367 558 aa23.46■■□□□ 1.35
CLN3-207ENST00000395653 PRCPP42785 496 aa23.46■■□□□ 1.35
CLN3-207ENST00000395653 VARS2Q5ST30 1063 aaKnown RBP23.46■■□□□ 1.35
CLN3-207ENST00000395653 SMRP1Q8NCR6 262 aa23.46■■□□□ 1.35
CLN3-207ENST00000395653 ANKRD36BP1Q96IX9 119 aa23.46■■□□□ 1.35
CLN3-207ENST00000395653 ZNF560Q96MR9 790 aa23.46■■□□□ 1.35
CLN3-207ENST00000395653 FNBP1Q96RU3 617 aa23.46■■□□□ 1.35
CLN3-207ENST00000395653 CLSTN3Q9BQT9 956 aa23.46■■□□□ 1.35
CLN3-207ENST00000395653 MTMR12Q9C0I1 747 aa23.46■■□□□ 1.35
CLN3-207ENST00000395653 LMBRD1Q9NUN5 540 aa23.46■■□□□ 1.35
CLN3-207ENST00000395653 DPP7Q9UHL4 492 aa23.46■■□□□ 1.35
CLN3-207ENST00000395653 PTPRJQ12913 1337 aa23.45■■□□□ 1.34
CLN3-207ENST00000395653 BMP1P13497 986 aa23.45■■□□□ 1.34
CLN3-207ENST00000395653 PNPLA4P41247 253 aa23.45■■□□□ 1.34
CLN3-207ENST00000395653 TAF6P49848 677 aa23.45■■□□□ 1.34
CLN3-207ENST00000395653 SMAD4Q13485 552 aaKnown RBP23.45■■□□□ 1.34
CLN3-207ENST00000395653 MRPL58Q14197 206 aaKnown RBP23.45■■□□□ 1.34
CLN3-207ENST00000395653 CLUL1Q15846 466 aa23.45■■□□□ 1.34
CLN3-207ENST00000395653 DUOXA2Q1HG44 320 aa23.45■■□□□ 1.34
CLN3-207ENST00000395653 PTCRAQ6ISU1 281 aaPredicted RBP23.45■■□□□ 1.34
CLN3-207ENST00000395653 DSTYKQ6XUX3 929 aa23.45■■□□□ 1.34
CLN3-207ENST00000395653 CGRRF1Q99675 332 aa23.45■■□□□ 1.34
CLN3-207ENST00000395653 FAM50BQ9Y247 325 aa23.45■■□□□ 1.34
CLN3-207ENST00000395653 GRXCR2A6NFK2 248 aa23.44■■□□□ 1.34
CLN3-207ENST00000395653 SPTLC1O15269 473 aa23.44■■□□□ 1.34
CLN3-207ENST00000395653 MBTPS2O43462 519 aa23.44■■□□□ 1.34
CLN3-207ENST00000395653 TNNC2P02585 160 aa23.44■■□□□ 1.34
CLN3-207ENST00000395653 ITGB3P05106 788 aa23.44■■□□□ 1.34
CLN3-207ENST00000395653 DLATP10515 647 aaKnown RBP23.44■■□□□ 1.34
CLN3-207ENST00000395653 NR2F2P24468 414 aa23.44■■□□□ 1.34
CLN3-207ENST00000395653 RPL13P26373 211 aaKnown RBP23.44■■□□□ 1.34
CLN3-207ENST00000395653 POLR2BP30876 1174 aaKnown RBP23.44■■□□□ 1.34
CLN3-207ENST00000395653 EDRF1Q3B7T1 1238 aa23.44■■□□□ 1.34
CLN3-207ENST00000395653 LMBRD2Q68DH5 695 aaPredicted RBP23.44■■□□□ 1.34
CLN3-207ENST00000395653 CENPPQ6IPU0 288 aa23.44■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms