RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 RCCD1A6NED2 376 aa13.35□□□□□ -0.27
CIITA-202ENST00000381835 ZNF185O15231 689 aa13.35□□□□□ -0.27
CIITA-202ENST00000381835 PMM2O15305 246 aa13.35□□□□□ -0.27
CIITA-202ENST00000381835 C4BPAP04003 597 aaKnown RBP13.35□□□□□ -0.27
CIITA-202ENST00000381835 HSPA1AP0DMV8 641 aaKnown RBP13.35□□□□□ -0.27
CIITA-202ENST00000381835 HSPA1BP0DMV9 641 aaKnown RBP13.35□□□□□ -0.27
CIITA-202ENST00000381835 AXLP30530 894 aa13.35□□□□□ -0.27
CIITA-202ENST00000381835 MGAT3Q09327 533 aa13.35□□□□□ -0.27
CIITA-202ENST00000381835 DCAF4L1Q3SXM0 396 aa13.35□□□□□ -0.27
CIITA-202ENST00000381835 TDRD10Q5VZ19 366 aaKnown RBP13.35□□□□□ -0.27
CIITA-202ENST00000381835 IQCEQ6IPM2 695 aa13.35□□□□□ -0.27
CIITA-202ENST00000381835 PHLDB3Q6NSJ2 640 aa13.35□□□□□ -0.27
CIITA-202ENST00000381835 PDXDC1Q6P996 788 aa13.35□□□□□ -0.27
CIITA-202ENST00000381835 SLC43A3Q8NBI5 491 aa13.35□□□□□ -0.27
CIITA-202ENST00000381835 RIN2Q8WYP3 895 aaPredicted RBP13.35□□□□□ -0.27
CIITA-202ENST00000381835 OSBPL7Q9BZF2 842 aa13.35□□□□□ -0.27
CIITA-202ENST00000381835 RAB20Q9NX57 234 aa13.35□□□□□ -0.27
CIITA-202ENST00000381835 APEX2Q9UBZ4 518 aa13.35□□□□□ -0.27
CIITA-202ENST00000381835 ST3GAL5Q9UNP4 418 aa13.35□□□□□ -0.27
CIITA-202ENST00000381835 ANO9A1A5B4 782 aa13.34□□□□□ -0.27
CIITA-202ENST00000381835 MACROD2A1Z1Q3 448 aa13.34□□□□□ -0.27
CIITA-202ENST00000381835 LACTBL1A8MY62 500 aa13.34□□□□□ -0.27
CIITA-202ENST00000381835 GGCXP38435 758 aa13.34□□□□□ -0.27
CIITA-202ENST00000381835 TFAMQ00059 246 aaKnown RBP13.34□□□□□ -0.27
CIITA-202ENST00000381835 ARID5AQ03989 594 aa13.34□□□□□ -0.27
CIITA-202ENST00000381835 KIF5AQ12840 1032 aa13.34□□□□□ -0.27
CIITA-202ENST00000381835 SURF1Q15526 300 aa13.34□□□□□ -0.27
CIITA-202ENST00000381835 ZACNQ401N2 412 aa13.34□□□□□ -0.27
CIITA-202ENST00000381835 ZNF618Q5T7W0 954 aa13.34□□□□□ -0.27
CIITA-202ENST00000381835 CCDC70Q6NSX1 233 aa13.34□□□□□ -0.27
CIITA-202ENST00000381835 CCNI2Q6ZMN8 369 aaPredicted RBP13.34□□□□□ -0.27
CIITA-202ENST00000381835 C15orf39Q6ZRI6 1047 aa13.34□□□□□ -0.27
CIITA-202ENST00000381835 APBB1IPQ7Z5R6 666 aaPredicted RBP13.34□□□□□ -0.27
CIITA-202ENST00000381835 WDR49Q8IV35 697 aa13.34□□□□□ -0.27
CIITA-202ENST00000381835 GSPT2Q8IYD1 628 aaKnown RBP13.34□□□□□ -0.27
CIITA-202ENST00000381835 ZNF333Q96JL9 665 aa13.34□□□□□ -0.27
CIITA-202ENST00000381835 ACAP3Q96P50 834 aa13.34□□□□□ -0.27
CIITA-202ENST00000381835 PI4K2AQ9BTU6 479 aa13.34□□□□□ -0.27
CIITA-202ENST00000381835 SELENOOQ9BVL4 669 aa13.34□□□□□ -0.27
CIITA-202ENST00000381835 MTMR12Q9C0I1 747 aa13.34□□□□□ -0.27
CIITA-202ENST00000381835 DNAJC12Q9UKB3 198 aa13.34□□□□□ -0.27
CIITA-202ENST00000381835 PLAGL2Q9UPG8 496 aa13.34□□□□□ -0.27
CIITA-202ENST00000381835 COQ4Q9Y3A0 265 aa13.34□□□□□ -0.27
CIITA-202ENST00000381835 DUSP10Q9Y6W6 482 aa13.34□□□□□ -0.27
CIITA-202ENST00000381835 CLSTN1O94985 981 aa13.34□□□□□ -0.27
CIITA-202ENST00000381835 GHRP10912 638 aa13.34□□□□□ -0.27
CIITA-202ENST00000381835 PIK3CAP42336 1068 aa13.34□□□□□ -0.27
CIITA-202ENST00000381835 C2orf54Q08AI8 447 aa13.34□□□□□ -0.27
CIITA-202ENST00000381835 KYAT1Q16773 422 aa13.34□□□□□ -0.27
CIITA-202ENST00000381835 TRIM71Q2Q1W2 868 aaKnown RBP13.34□□□□□ -0.27
CIITA-202ENST00000381835 SLC10A6Q3KNW5 377 aa13.34□□□□□ -0.27
CIITA-202ENST00000381835 TWF2Q6IBS0 349 aaKnown RBP13.34□□□□□ -0.27
CIITA-202ENST00000381835 EFCAB13Q8IY85 973 aa13.34□□□□□ -0.27
CIITA-202ENST00000381835 U2AF1L4Q8WU68 220 aaKnown RBP13.34□□□□□ -0.27
CIITA-202ENST00000381835 SECISBP2LQ93073 1101 aaKnown RBP13.34□□□□□ -0.27
CIITA-202ENST00000381835 APOL6Q9BWW8 343 aa13.34□□□□□ -0.27
CIITA-202ENST00000381835 PLEKHA4Q9H4M7 779 aa13.34□□□□□ -0.27
CIITA-202ENST00000381835 AGO3Q9H9G7 860 aaKnown RBP13.34□□□□□ -0.27
CIITA-202ENST00000381835 UBE2TQ9NPD8 197 aaPredicted RBP13.34□□□□□ -0.27
CIITA-202ENST00000381835 SNTG2Q9NY99 539 aa13.34□□□□□ -0.27
CIITA-202ENST00000381835 MEFVO15553 781 aaPredicted RBP13.33□□□□□ -0.28
CIITA-202ENST00000381835 IL18RAPO95256 599 aa13.33□□□□□ -0.28
CIITA-202ENST00000381835 HLA-DRAP01903 254 aa13.33□□□□□ -0.28
CIITA-202ENST00000381835 TMEM191BP0C7N4 346 aa13.33□□□□□ -0.28
CIITA-202ENST00000381835 GRM5P41594 1212 aa13.33□□□□□ -0.28
CIITA-202ENST00000381835 MAGEA9P43362 315 aa13.33□□□□□ -0.28
CIITA-202ENST00000381835 CTCFP49711 727 aaPredicted RBP13.33□□□□□ -0.28
CIITA-202ENST00000381835 ATN1P54259 1190 aaPredicted RBP13.33□□□□□ -0.28
CIITA-202ENST00000381835 CYP27A1Q02318 531 aa13.33□□□□□ -0.28
CIITA-202ENST00000381835 ARHGAP44Q17R89 818 aa13.33□□□□□ -0.28
CIITA-202ENST00000381835 DUOXA2Q1HG44 320 aa13.33□□□□□ -0.28
CIITA-202ENST00000381835 SFMBT2Q5VUG0 894 aa13.33□□□□□ -0.28
CIITA-202ENST00000381835 ARHGEF19Q8IW93 802 aa13.33□□□□□ -0.28
CIITA-202ENST00000381835 PPM1KQ8N3J5 372 aa13.33□□□□□ -0.28
CIITA-202ENST00000381835 NXF3Q9H4D5 531 aaKnown RBP13.33□□□□□ -0.28
CIITA-202ENST00000381835 FBXL5Q9UKA1 691 aa13.33□□□□□ -0.28
CIITA-202ENST00000381835 MROH7Q68CQ1 1323 aa13.33□□□□□ -0.28
CIITA-202ENST00000381835 PDE2AO00408 941 aaPredicted RBP13.33□□□□□ -0.28
CIITA-202ENST00000381835 SGPL1O95470 568 aa13.33□□□□□ -0.28
CIITA-202ENST00000381835 NFICP08651 508 aa13.33□□□□□ -0.28
CIITA-202ENST00000381835 MYBL2P10244 700 aa13.33□□□□□ -0.28
CIITA-202ENST00000381835 CKBP12277 381 aa13.33□□□□□ -0.28
CIITA-202ENST00000381835 CD52P31358 61 aa13.33□□□□□ -0.28
CIITA-202ENST00000381835 SPA17Q15506 151 aa13.33□□□□□ -0.28
CIITA-202ENST00000381835 FBXO47Q5MNV8 452 aa13.33□□□□□ -0.28
CIITA-202ENST00000381835 SCARA3Q6AZY7 606 aa13.33□□□□□ -0.28
CIITA-202ENST00000381835 CCDC42Q96M95 316 aa13.33□□□□□ -0.28
CIITA-202ENST00000381835 TSGA10Q9BZW7 698 aa13.33□□□□□ -0.28
CIITA-202ENST00000381835 NUCKS1Q9H1E3 243 aaKnown RBP13.33□□□□□ -0.28
CIITA-202ENST00000381835 BCCIPQ9P287 314 aaKnown RBP eCLIP13.33□□□□□ -0.28
CIITA-202ENST00000381835 GPR182O15218 404 aa13.32□□□□□ -0.28
CIITA-202ENST00000381835 VNN1O95497 513 aa13.32□□□□□ -0.28
CIITA-202ENST00000381835 PLEKP08567 350 aaPredicted RBP13.32□□□□□ -0.28
CIITA-202ENST00000381835 AKAP5P24588 427 aa13.32□□□□□ -0.28
CIITA-202ENST00000381835 HNRNPH3P31942 346 aaKnown RBP13.32□□□□□ -0.28
CIITA-202ENST00000381835 CDK7P50613 346 aa13.32□□□□□ -0.28
CIITA-202ENST00000381835 VAV2P52735 878 aa13.32□□□□□ -0.28
CIITA-202ENST00000381835 DRAP1Q14919 205 aaPredicted RBP13.32□□□□□ -0.28
CIITA-202ENST00000381835 UBXN11Q5T124 520 aa13.32□□□□□ -0.28
CIITA-202ENST00000381835 JADE1Q6IE81 842 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms