RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.47□□□□□ -0.09
VPS28-202ENST00000377348 GOLGA5Q8TBA6 731 aa14.47□□□□□ -0.09
VPS28-202ENST00000377348 LNX1Q8TBB1 728 aaPredicted RBP14.47□□□□□ -0.09
VPS28-202ENST00000377348 GBP4Q96PP9 640 aa14.47□□□□□ -0.09
VPS28-202ENST00000377348 EMILIN2Q9BXX0 1053 aa14.47□□□□□ -0.09
VPS28-202ENST00000377348 RXFP1Q9HBX9 757 aa14.47□□□□□ -0.09
VPS28-202ENST00000377348 KIAA1586Q9HCI6 787 aa14.47□□□□□ -0.09
VPS28-202ENST00000377348 DPP3Q9NY33 737 aa14.47□□□□□ -0.09
VPS28-202ENST00000377348 C5orf42Q9H799 3197 aa14.46□□□□□ -0.09
VPS28-202ENST00000377348 ANO9A1A5B4 782 aa14.46□□□□□ -0.09
VPS28-202ENST00000377348 BIN1O00499 593 aa14.46□□□□□ -0.09
VPS28-202ENST00000377348 SPTLC1O15269 473 aa14.46□□□□□ -0.09
VPS28-202ENST00000377348 TRAPPC3O43617 180 aa14.46□□□□□ -0.09
VPS28-202ENST00000377348 KIF20AO95235 890 aa14.46□□□□□ -0.09
VPS28-202ENST00000377348 NR3C1P04150 777 aa14.46□□□□□ -0.09
VPS28-202ENST00000377348 DLATP10515 647 aaKnown RBP14.46□□□□□ -0.09
VPS28-202ENST00000377348 CASP4P49662 377 aa14.46□□□□□ -0.09
VPS28-202ENST00000377348 CLCN4P51793 760 aa14.46□□□□□ -0.09
VPS28-202ENST00000377348 MRPS5P82675 430 aaKnown RBP14.46□□□□□ -0.09
VPS28-202ENST00000377348 CYP24A1Q07973 514 aa14.46□□□□□ -0.09
VPS28-202ENST00000377348 PSMD5Q16401 504 aa14.46□□□□□ -0.09
VPS28-202ENST00000377348 C1orf127Q8N9H9 656 aa14.46□□□□□ -0.09
VPS28-202ENST00000377348 OR5B17Q8NGF7 314 aa14.46□□□□□ -0.09
VPS28-202ENST00000377348 ATXN2LQ8WWM7 1075 aaKnown RBP14.46□□□□□ -0.09
VPS28-202ENST00000377348 PIK3R5Q8WYR1 880 aa14.46□□□□□ -0.09
VPS28-202ENST00000377348 CCDC127Q96BQ5 260 aa14.46□□□□□ -0.09
VPS28-202ENST00000377348 SUSD3Q96L08 255 aa14.46□□□□□ -0.09
VPS28-202ENST00000377348 POP1Q99575 1024 aaKnown RBP14.46□□□□□ -0.09
VPS28-202ENST00000377348 APOL5Q9BWW9 433 aa14.46□□□□□ -0.09
VPS28-202ENST00000377348 MTMR12Q9C0I1 747 aa14.46□□□□□ -0.09
VPS28-202ENST00000377348 GZF1Q9H116 711 aaPredicted RBP14.46□□□□□ -0.09
VPS28-202ENST00000377348 DMAC2Q9NW81 257 aa14.46□□□□□ -0.09
VPS28-202ENST00000377348 TRAF3IP3Q9Y228 551 aa14.46□□□□□ -0.09
VPS28-202ENST00000377348 SSX2IPQ9Y2D8 614 aa14.46□□□□□ -0.09
VPS28-202ENST00000377348 TIMM13Q9Y5L4 95 aaPredicted RBP14.46□□□□□ -0.09
VPS28-202ENST00000377348 VWA8A3KMH1 1905 aa14.46□□□□□ -0.09
VPS28-202ENST00000377348 PIRO00625 290 aa14.45□□□□□ -0.1
VPS28-202ENST00000377348 ADAM12O43184 909 aa14.45□□□□□ -0.1
VPS28-202ENST00000377348 CALUO43852 315 aaPredicted RBP14.45□□□□□ -0.1
VPS28-202ENST00000377348 ITGB3P05106 788 aa14.45□□□□□ -0.1
VPS28-202ENST00000377348 TMEM191BP0C7N4 346 aa14.45□□□□□ -0.1
VPS28-202ENST00000377348 BMP6P22004 513 aa14.45□□□□□ -0.1
VPS28-202ENST00000377348 POLR2BP30876 1174 aaKnown RBP14.45□□□□□ -0.1
VPS28-202ENST00000377348 AARSP49588 968 aaKnown RBP eCLIP14.45□□□□□ -0.11e-6■■■■■ 36.1
VPS28-202ENST00000377348 LEXMQ3ZCV2 418 aa14.45□□□□□ -0.1
VPS28-202ENST00000377348 ZCWPW2Q504Y3 356 aa14.45□□□□□ -0.1
VPS28-202ENST00000377348 RSPO2Q6UXX9 243 aaPredicted RBP14.45□□□□□ -0.1
VPS28-202ENST00000377348 PALB2Q86YC2 1186 aa14.45□□□□□ -0.1
VPS28-202ENST00000377348 NT5DC4Q86YG4 428 aa14.45□□□□□ -0.1
VPS28-202ENST00000377348 SLC9A9Q8IVB4 645 aa14.45□□□□□ -0.1
VPS28-202ENST00000377348 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.45□□□□□ -0.1
VPS28-202ENST00000377348 PLEKHO2Q8TD55 490 aa14.45□□□□□ -0.1
VPS28-202ENST00000377348 SLC22A17Q8WUG5 538 aa14.45□□□□□ -0.1
VPS28-202ENST00000377348 CACTINQ8WUQ7 758 aaKnown RBP14.45□□□□□ -0.1
VPS28-202ENST00000377348 MSLNLQ96KJ4 702 aa14.45□□□□□ -0.1
VPS28-202ENST00000377348 ASB2Q96Q27 587 aa14.45□□□□□ -0.1
VPS28-202ENST00000377348 INTS13Q9NVM9 706 aa14.45□□□□□ -0.1
VPS28-202ENST00000377348 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.45□□□□□ -0.1
VPS28-202ENST00000377348 SYN3O14994 580 aa14.44□□□□□ -0.1
VPS28-202ENST00000377348 ADH1AP07327 375 aa14.44□□□□□ -0.1
VPS28-202ENST00000377348 SPATA31D3P0C874 917 aa14.44□□□□□ -0.1
VPS28-202ENST00000377348 CD44P16070 742 aaKnown RBP14.44□□□□□ -0.1
VPS28-202ENST00000377348 PMS1P54277 932 aaKnown RBP14.44□□□□□ -0.1
VPS28-202ENST00000377348 LILRA4P59901 499 aa14.44□□□□□ -0.1
VPS28-202ENST00000377348 PSMD6Q15008 389 aa14.44□□□□□ -0.1
VPS28-202ENST00000377348 SURF1Q15526 300 aa14.44□□□□□ -0.1
VPS28-202ENST00000377348 VARS2Q5ST30 1063 aaKnown RBP14.44□□□□□ -0.1
VPS28-202ENST00000377348 CEP135Q66GS9 1140 aa14.44□□□□□ -0.1
VPS28-202ENST00000377348 ANKRD54Q6NXT1 300 aa14.44□□□□□ -0.1
VPS28-202ENST00000377348 DSTYKQ6XUX3 929 aa14.44□□□□□ -0.1
VPS28-202ENST00000377348 TMEM184AQ6ZMB5 413 aa14.44□□□□□ -0.1
VPS28-202ENST00000377348 SPATA31D4Q6ZUB0 917 aa14.44□□□□□ -0.1
VPS28-202ENST00000377348 GPR65Q8IYL9 337 aa14.44□□□□□ -0.1
VPS28-202ENST00000377348 ADSSL1Q8N142 457 aa14.44□□□□□ -0.1
VPS28-202ENST00000377348 CSGALNACT2Q8N6G5 542 aa14.44□□□□□ -0.1
VPS28-202ENST00000377348 CXorf38Q8TB03 319 aa14.44□□□□□ -0.1
VPS28-202ENST00000377348 FEZF2Q8TBJ5 459 aa14.44□□□□□ -0.1
VPS28-202ENST00000377348 CASP10Q92851 521 aa14.44□□□□□ -0.1
VPS28-202ENST00000377348 EEF2KMTQ96G04 330 aa14.44□□□□□ -0.1
VPS28-202ENST00000377348 SENP8Q96LD8 212 aa14.44□□□□□ -0.1
VPS28-202ENST00000377348 MFSD14AQ96MC6 490 aa14.44□□□□□ -0.1
VPS28-202ENST00000377348 CGRRF1Q99675 332 aa14.44□□□□□ -0.1
VPS28-202ENST00000377348 CLSTN3Q9BQT9 956 aa14.44□□□□□ -0.1
VPS28-202ENST00000377348 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP14.44□□□□□ -0.15e-6■□□□□ 10.2
VPS28-202ENST00000377348 FNIP2Q9P278 1114 aa14.44□□□□□ -0.1
VPS28-202ENST00000377348 SIX4Q9UIU6 781 aa14.44□□□□□ -0.1
VPS28-202ENST00000377348 CD207Q9UJ71 328 aa14.44□□□□□ -0.1
VPS28-202ENST00000377348 CDH22Q9UJ99 828 aa14.44□□□□□ -0.1
VPS28-202ENST00000377348 PCDHB8Q9UN66 801 aa14.44□□□□□ -0.1
VPS28-202ENST00000377348 AGAP1Q9UPQ3 857 aa14.44□□□□□ -0.1
VPS28-202ENST00000377348 FSD2A1L4K1 749 aa14.43□□□□□ -0.1
VPS28-202ENST00000377348 TRIM49BA6NDI0 452 aa14.43□□□□□ -0.1
VPS28-202ENST00000377348 M0QZQ0 153 aa14.43□□□□□ -0.1
VPS28-202ENST00000377348 TGM5O43548 720 aa14.43□□□□□ -0.1
VPS28-202ENST00000377348 GLUD1P00367 558 aa14.43□□□□□ -0.1
VPS28-202ENST00000377348 KRT19P08727 400 aa14.43□□□□□ -0.1
VPS28-202ENST00000377348 IL9P15248 144 aa14.43□□□□□ -0.1
VPS28-202ENST00000377348 TNNI1P19237 187 aa14.43□□□□□ -0.1
VPS28-202ENST00000377348 NR2F2P24468 414 aa14.43□□□□□ -0.1
VPS28-202ENST00000377348 TAF6P49848 677 aa14.43□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms