RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 STKLD1Q8NE28 680 aa13.07□□□□□ -0.32
VPS13A-204ENST00000376634 GABBR1Q9UBS5 961 aa13.07□□□□□ -0.32
VPS13A-204ENST00000376634 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.07□□□□□ -0.32
VPS13A-204ENST00000376634 NRKQ7Z2Y5 1582 aa13.07□□□□□ -0.32
VPS13A-204ENST00000376634 GLI2P10070 1586 aa13.07□□□□□ -0.32
VPS13A-204ENST00000376634 ZNF211Q13398 564 aaPredicted RBP13.07□□□□□ -0.32
VPS13A-204ENST00000376634 EIF4E1BA6NMX2 242 aaKnown RBP13.07□□□□□ -0.32
VPS13A-204ENST00000376634 DLGAP3O95886 979 aa13.07□□□□□ -0.32
VPS13A-204ENST00000376634 PLA2G4AP47712 749 aa13.07□□□□□ -0.32
VPS13A-204ENST00000376634 DNAL1Q4LDG9 190 aa13.07□□□□□ -0.32
VPS13A-204ENST00000376634 MDH1BQ5I0G3 518 aa13.07□□□□□ -0.32
VPS13A-204ENST00000376634 CYFIP1Q7L576 1253 aa13.07□□□□□ -0.32
VPS13A-204ENST00000376634 IL17REQ8NFR9 667 aa13.07□□□□□ -0.32
VPS13A-204ENST00000376634 KRT35Q92764 455 aa13.07□□□□□ -0.32
VPS13A-204ENST00000376634 MED15Q96RN5 788 aa13.07□□□□□ -0.32
VPS13A-204ENST00000376634 ASAP1Q9ULH1 1129 aa13.07□□□□□ -0.32
VPS13A-204ENST00000376634 A8MXQ7 604 aa13.07□□□□□ -0.32
VPS13A-204ENST00000376634 NFIBO00712 420 aa13.07□□□□□ -0.32
VPS13A-204ENST00000376634 C16orf62Q7Z3J2 963 aa13.07□□□□□ -0.32
VPS13A-204ENST00000376634 HS6ST3Q8IZP7 471 aa13.07□□□□□ -0.32
VPS13A-204ENST00000376634 CLTCQ00610 1675 aaKnown RBP13.07□□□□□ -0.32
VPS13A-204ENST00000376634 EMSYQ7Z589 1322 aa13.06□□□□□ -0.32
VPS13A-204ENST00000376634 SLC1A1P43005 524 aa13.06□□□□□ -0.32
VPS13A-204ENST00000376634 C1orf54Q8WWF1 131 aa13.06□□□□□ -0.32
VPS13A-204ENST00000376634 KRT84Q9NSB2 600 aa13.06□□□□□ -0.32
VPS13A-204ENST00000376634 MAPRE1Q15691 268 aaKnown RBP13.06□□□□□ -0.32
VPS13A-204ENST00000376634 RCOR2Q8IZ40 523 aa13.06□□□□□ -0.32
VPS13A-204ENST00000376634 EPN3Q9H201 632 aa13.06□□□□□ -0.32
VPS13A-204ENST00000376634 PSMC3IPQ9P2W1 217 aaPredicted RBP13.06□□□□□ -0.32
VPS13A-204ENST00000376634 AGO2Q9UKV8 859 aaKnown RBP13.06□□□□□ -0.32
VPS13A-204ENST00000376634 CDY2AQ9Y6F7 541 aa13.06□□□□□ -0.32
VPS13A-204ENST00000376634 CDY1Q9Y6F8 540 aa13.06□□□□□ -0.32
VPS13A-204ENST00000376634 CFAP99D6REC4 459 aa13.06□□□□□ -0.32
VPS13A-204ENST00000376634 EIF2S1P05198 315 aaKnown RBP13.06□□□□□ -0.32
VPS13A-204ENST00000376634 HNRNPH2P55795 449 aaKnown RBP13.06□□□□□ -0.32
VPS13A-204ENST00000376634 PFKFB3Q16875 520 aaPredicted RBP13.06□□□□□ -0.32
VPS13A-204ENST00000376634 VPS37AQ8NEZ2 397 aa13.06□□□□□ -0.32
VPS13A-204ENST00000376634 RFFLQ8WZ73 363 aa13.06□□□□□ -0.32
VPS13A-204ENST00000376634 KLHL31Q9H511 634 aa13.06□□□□□ -0.32
VPS13A-204ENST00000376634 SOX13Q9UN79 622 aa13.06□□□□□ -0.32
VPS13A-204ENST00000376634 RTN2O75298 545 aa13.06□□□□□ -0.32
VPS13A-204ENST00000376634 EFNA5P52803 228 aa13.06□□□□□ -0.32
VPS13A-204ENST00000376634 PLOD1Q02809 727 aaPredicted RBP13.06□□□□□ -0.32
VPS13A-204ENST00000376634 SF3B3Q15393 1217 aaKnown RBP13.06□□□□□ -0.32
VPS13A-204ENST00000376634 DGKHQ86XP1 1220 aa13.06□□□□□ -0.32
VPS13A-204ENST00000376634 FOXP4Q8IVH2 680 aaPredicted RBP13.06□□□□□ -0.32
VPS13A-204ENST00000376634 FAM20AQ96MK3 541 aa13.06□□□□□ -0.32
VPS13A-204ENST00000376634 ADGRL2O95490 1459 aa13.06□□□□□ -0.32
VPS13A-204ENST00000376634 TRIM49BA6NDI0 452 aa13.06□□□□□ -0.32
VPS13A-204ENST00000376634 PSMA4P25789 261 aaKnown RBP13.06□□□□□ -0.32
VPS13A-204ENST00000376634 CNDP1Q96KN2 507 aa13.06□□□□□ -0.32
VPS13A-204ENST00000376634 SH3GL1Q99961 368 aa13.06□□□□□ -0.32
VPS13A-204ENST00000376634 ARL2BPQ9Y2Y0 163 aa13.06□□□□□ -0.32
VPS13A-204ENST00000376634 TLK2Q86UE8 772 aa13.06□□□□□ -0.32
VPS13A-204ENST00000376634 XPO7Q9UIA9 1087 aaKnown RBP13.06□□□□□ -0.32
VPS13A-204ENST00000376634 STAT4Q14765 748 aa13.06□□□□□ -0.32
VPS13A-204ENST00000376634 RNPC3Q96LT9 517 aaKnown RBP13.06□□□□□ -0.32
VPS13A-204ENST00000376634 DMAP1Q9NPF5 467 aaPredicted RBP13.06□□□□□ -0.32
VPS13A-204ENST00000376634 SNX17Q15036 470 aa13.06□□□□□ -0.32
VPS13A-204ENST00000376634 PROSER3Q2NL68 480 aa13.06□□□□□ -0.32
VPS13A-204ENST00000376634 TRIM65Q6PJ69 517 aa13.06□□□□□ -0.32
VPS13A-204ENST00000376634 SENP7Q9BQF6 1050 aa13.06□□□□□ -0.32
VPS13A-204ENST00000376634 PPCSQ9HAB8 311 aa13.06□□□□□ -0.32
VPS13A-204ENST00000376634 VPS9D1Q9Y2B5 631 aa13.06□□□□□ -0.32
VPS13A-204ENST00000376634 SHROOM1Q2M3G4 852 aaPredicted RBP13.05□□□□□ -0.32
VPS13A-204ENST00000376634 KCNV1Q6PIU1 500 aa13.05□□□□□ -0.32
VPS13A-204ENST00000376634 CALML6Q8TD86 181 aa13.05□□□□□ -0.32
VPS13A-204ENST00000376634 BBS2Q9BXC9 721 aa13.05□□□□□ -0.32
VPS13A-204ENST00000376634 ZFYVE1Q9HBF4 777 aa13.05□□□□□ -0.32
VPS13A-204ENST00000376634 SCN3BQ9NY72 215 aa13.05□□□□□ -0.32
VPS13A-204ENST00000376634 ATP9BO43861 1147 aa13.05□□□□□ -0.32
VPS13A-204ENST00000376634 C20orf96Q9NUD7 363 aaPredicted RBP13.05□□□□□ -0.32
VPS13A-204ENST00000376634 CACNA2D2Q9NY47 1150 aa13.05□□□□□ -0.32
VPS13A-204ENST00000376634 RESTQ13127 1097 aa13.05□□□□□ -0.32
VPS13A-204ENST00000376634 SDE2Q6IQ49 451 aa13.05□□□□□ -0.32
VPS13A-204ENST00000376634 ALG13Q9NP73 1137 aaKnown RBP13.05□□□□□ -0.32
VPS13A-204ENST00000376634 ZC3H13Q5T200 1668 aaKnown RBP13.05□□□□□ -0.32
VPS13A-204ENST00000376634 PSMC5P62195 406 aa13.05□□□□□ -0.32
VPS13A-204ENST00000376634 BFSP2Q13515 415 aa13.05□□□□□ -0.32
VPS13A-204ENST00000376634 GRAPQ13588 217 aa13.05□□□□□ -0.32
VPS13A-204ENST00000376634 MFSD4BQ5TF39 518 aa13.05□□□□□ -0.32
VPS13A-204ENST00000376634 C11orf74Q86VG3 221 aa13.05□□□□□ -0.32
VPS13A-204ENST00000376634 C10orf53Q8N6V4 93 aa13.05□□□□□ -0.32
VPS13A-204ENST00000376634 GRAPLQ8TC17 118 aaPredicted RBP13.05□□□□□ -0.32
VPS13A-204ENST00000376634 NMRK1Q9NWW6 199 aa13.05□□□□□ -0.32
VPS13A-204ENST00000376634 HDAC6Q9UBN7 1215 aa13.05□□□□□ -0.32
VPS13A-204ENST00000376634 VMP1Q96GC9 406 aa13.05□□□□□ -0.32
VPS13A-204ENST00000376634 TRIM13O60858 407 aa13.05□□□□□ -0.32
VPS13A-204ENST00000376634 COQ7Q99807 217 aa13.05□□□□□ -0.32
VPS13A-204ENST00000376634 INTS2Q9H0H0 1204 aaKnown RBP13.05□□□□□ -0.32
VPS13A-204ENST00000376634 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.05□□□□□ -0.324e-8■■■■□ 23.2
VPS13A-204ENST00000376634 FRMD5Q7Z6J6 570 aa13.05□□□□□ -0.32
VPS13A-204ENST00000376634 UTYO14607 1347 aa13.05□□□□□ -0.32
VPS13A-204ENST00000376634 SNTNA6NMZ2 147 aa13.05□□□□□ -0.32
VPS13A-204ENST00000376634 USP17L15C9J2P7 530 aa13.05□□□□□ -0.32
VPS13A-204ENST00000376634 USP17L13C9JLJ4 530 aa13.05□□□□□ -0.32
VPS13A-204ENST00000376634 USP17L11C9JVI0 530 aa13.05□□□□□ -0.32
VPS13A-204ENST00000376634 USP17L18D6R9N7 530 aa13.05□□□□□ -0.32
VPS13A-204ENST00000376634 USP17L22D6RA61 530 aa13.05□□□□□ -0.32
VPS13A-204ENST00000376634 USP17L17D6RBQ6 530 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms