RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 FGFR3P22607 806 aa16.31■□□□□ 0.2
SMPDL3A-201ENST00000368440 LTBRP36941 435 aa16.31■□□□□ 0.2
SMPDL3A-201ENST00000368440 PMS1P54277 932 aaKnown RBP16.31■□□□□ 0.2
SMPDL3A-201ENST00000368440 KIAA1841Q6NSI8 718 aa16.31■□□□□ 0.2
SMPDL3A-201ENST00000368440 EP400NLQ6ZTU2 488 aa16.31■□□□□ 0.2
SMPDL3A-201ENST00000368440 EFHBQ8N7U6 833 aa16.31■□□□□ 0.2
SMPDL3A-201ENST00000368440 C1orf127Q8N9H9 656 aa16.31■□□□□ 0.2
SMPDL3A-201ENST00000368440 TMEM174Q8WUU8 243 aa16.31■□□□□ 0.2
SMPDL3A-201ENST00000368440 PABPC5Q96DU9 382 aaKnown RBP16.31■□□□□ 0.2
SMPDL3A-201ENST00000368440 KLHL5Q96PQ7 755 aa16.31■□□□□ 0.2
SMPDL3A-201ENST00000368440 POP1Q99575 1024 aaKnown RBP16.31■□□□□ 0.2
SMPDL3A-201ENST00000368440 TTPALQ9BTX7 342 aa16.31■□□□□ 0.2
SMPDL3A-201ENST00000368440 MTMR12Q9C0I1 747 aa16.31■□□□□ 0.2
SMPDL3A-201ENST00000368440 UBE2ZQ9H832 354 aaPredicted RBP16.31■□□□□ 0.2
SMPDL3A-201ENST00000368440 KIAA1468Q9P260 1216 aa16.31■□□□□ 0.2
SMPDL3A-201ENST00000368440 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.31■□□□□ 0.2
SMPDL3A-201ENST00000368440 TRIM49BA6NDI0 452 aa16.31■□□□□ 0.2
SMPDL3A-201ENST00000368440 PIRO00625 290 aa16.31■□□□□ 0.2
SMPDL3A-201ENST00000368440 SPTLC1O15269 473 aa16.31■□□□□ 0.2
SMPDL3A-201ENST00000368440 NR2F2P24468 414 aa16.31■□□□□ 0.2
SMPDL3A-201ENST00000368440 ELAVL2Q12926 359 aaKnown RBP16.31■□□□□ 0.2
SMPDL3A-201ENST00000368440 ADAM15Q13444 863 aa16.31■□□□□ 0.2
SMPDL3A-201ENST00000368440 KCNC3Q14003 757 aa16.31■□□□□ 0.2
SMPDL3A-201ENST00000368440 BMS1Q14692 1282 aaKnown RBP16.31■□□□□ 0.2
SMPDL3A-201ENST00000368440 PSMD6Q15008 389 aa16.31■□□□□ 0.2
SMPDL3A-201ENST00000368440 LLGL2Q6P1M3 1020 aa16.31■□□□□ 0.2
SMPDL3A-201ENST00000368440 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.31■□□□□ 0.2
SMPDL3A-201ENST00000368440 NT5DC4Q86YG4 428 aa16.31■□□□□ 0.2
SMPDL3A-201ENST00000368440 HLA-CQ95604 372 aa16.31■□□□□ 0.2
SMPDL3A-201ENST00000368440 CCDC127Q96BQ5 260 aa16.31■□□□□ 0.2
SMPDL3A-201ENST00000368440 MFSD14AQ96MC6 490 aa16.31■□□□□ 0.2
SMPDL3A-201ENST00000368440 INTS13Q9NVM9 706 aa16.31■□□□□ 0.2
SMPDL3A-201ENST00000368440 TEX28O15482 410 aa16.3■□□□□ 0.2
SMPDL3A-201ENST00000368440 ITGB3P05106 788 aa16.3■□□□□ 0.2
SMPDL3A-201ENST00000368440 DLATP10515 647 aaKnown RBP16.3■□□□□ 0.2
SMPDL3A-201ENST00000368440 NFIL3Q16649 462 aa16.3■□□□□ 0.2
SMPDL3A-201ENST00000368440 CEP135Q66GS9 1140 aa16.3■□□□□ 0.2
SMPDL3A-201ENST00000368440 CENPPQ6IPU0 288 aa16.3■□□□□ 0.2
SMPDL3A-201ENST00000368440 GLYCTKQ8IVS8 523 aa16.3■□□□□ 0.2
SMPDL3A-201ENST00000368440 CXorf38Q8TB03 319 aa16.3■□□□□ 0.2
SMPDL3A-201ENST00000368440 LNX1Q8TBB1 728 aaPredicted RBP16.3■□□□□ 0.2
SMPDL3A-201ENST00000368440 EEF2KMTQ96G04 330 aa16.3■□□□□ 0.2
SMPDL3A-201ENST00000368440 SUSD3Q96L08 255 aa16.3■□□□□ 0.2
SMPDL3A-201ENST00000368440 RXFP1Q9HBX9 757 aa16.3■□□□□ 0.2
SMPDL3A-201ENST00000368440 THEGQ9P2T0 379 aa16.3■□□□□ 0.2
SMPDL3A-201ENST00000368440 BARX2Q9UMQ3 279 aaPredicted RBP16.3■□□□□ 0.2
SMPDL3A-201ENST00000368440 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.3■□□□□ 0.2
SMPDL3A-201ENST00000368440 HCFC2Q9Y5Z7 792 aa16.3■□□□□ 0.2
SMPDL3A-201ENST00000368440 PPP1R3GB7ZBB8 358 aa16.29■□□□□ 0.2
SMPDL3A-201ENST00000368440 TRAPPC3O43617 180 aa16.29■□□□□ 0.2
SMPDL3A-201ENST00000368440 TMEM191BP0C7N4 346 aa16.29■□□□□ 0.2
SMPDL3A-201ENST00000368440 KCNA5P22460 613 aa16.29■□□□□ 0.2
SMPDL3A-201ENST00000368440 POLR2BP30876 1174 aaKnown RBP16.29■□□□□ 0.2
SMPDL3A-201ENST00000368440 AARSP49588 968 aaKnown RBP eCLIP16.29■□□□□ 0.2
SMPDL3A-201ENST00000368440 MYBPC2Q14324 1141 aa16.29■□□□□ 0.2
SMPDL3A-201ENST00000368440 SURF1Q15526 300 aa16.29■□□□□ 0.2
SMPDL3A-201ENST00000368440 ANKRD40Q6AI12 368 aa16.29■□□□□ 0.2
SMPDL3A-201ENST00000368440 WDR49Q8IV35 697 aa16.29■□□□□ 0.2
SMPDL3A-201ENST00000368440 PIK3R5Q8WYR1 880 aa16.29■□□□□ 0.2
SMPDL3A-201ENST00000368440 ZNF516Q92618 1163 aa16.29■□□□□ 0.2
SMPDL3A-201ENST00000368440 CDCA3Q99618 268 aaPredicted RBP16.29■□□□□ 0.2
SMPDL3A-201ENST00000368440 CGRRF1Q99675 332 aa16.29■□□□□ 0.2
SMPDL3A-201ENST00000368440 NUP62CLQ9H1M0 184 aa16.29■□□□□ 0.2
SMPDL3A-201ENST00000368440 CLEC1BQ9P126 229 aa16.29■□□□□ 0.2
SMPDL3A-201ENST00000368440 SIX4Q9UIU6 781 aa16.29■□□□□ 0.2
SMPDL3A-201ENST00000368440 BRWD1Q9NSI6 2320 aa16.29■□□□□ 0.2
SMPDL3A-201ENST00000368440 H3BQ06 376 aaPredicted RBP16.29■□□□□ 0.2
SMPDL3A-201ENST00000368440 AKAP3O75969 853 aa16.29■□□□□ 0.2
SMPDL3A-201ENST00000368440 MBD3O95983 291 aa16.29■□□□□ 0.2
SMPDL3A-201ENST00000368440 EPCAMP16422 314 aa16.29■□□□□ 0.2
SMPDL3A-201ENST00000368440 LILRA4P59901 499 aa16.29■□□□□ 0.2
SMPDL3A-201ENST00000368440 PSMD5Q16401 504 aa16.29■□□□□ 0.2
SMPDL3A-201ENST00000368440 CACTINQ8WUQ7 758 aaKnown RBP16.29■□□□□ 0.2
SMPDL3A-201ENST00000368440 EMILIN2Q9BXX0 1053 aa16.29■□□□□ 0.2
SMPDL3A-201ENST00000368440 COG5Q9UP83 839 aa16.29■□□□□ 0.2
SMPDL3A-201ENST00000368440 TIMM13Q9Y5L4 95 aaPredicted RBP16.29■□□□□ 0.2
SMPDL3A-201ENST00000368440 LRRIQ3A6PVS8 624 aaPredicted RBP16.28■□□□□ 0.2
SMPDL3A-201ENST00000368440 ADAM12O43184 909 aa16.28■□□□□ 0.2
SMPDL3A-201ENST00000368440 TNNI1P19237 187 aa16.28■□□□□ 0.2
SMPDL3A-201ENST00000368440 KLRC2P26717 231 aa16.28■□□□□ 0.2
SMPDL3A-201ENST00000368440 NDUFV1P49821 464 aa16.28■□□□□ 0.2
SMPDL3A-201ENST00000368440 DLG4P78352 724 aa16.28■□□□□ 0.2
SMPDL3A-201ENST00000368440 ADAM9Q13443 819 aa16.28■□□□□ 0.2
SMPDL3A-201ENST00000368440 CLUL1Q15846 466 aa16.28■□□□□ 0.2
SMPDL3A-201ENST00000368440 EDRF1Q3B7T1 1238 aa16.28■□□□□ 0.2
SMPDL3A-201ENST00000368440 KLHL10Q6JEL2 608 aa16.28■□□□□ 0.2
SMPDL3A-201ENST00000368440 RSPO2Q6UXX9 243 aaPredicted RBP16.28■□□□□ 0.2
SMPDL3A-201ENST00000368440 CSGALNACT2Q8N6G5 542 aa16.28■□□□□ 0.2
SMPDL3A-201ENST00000368440 PARD3BQ8TEW8 1205 aa16.28■□□□□ 0.2
SMPDL3A-201ENST00000368440 SLC22A17Q8WUG5 538 aa16.28■□□□□ 0.2
SMPDL3A-201ENST00000368440 ANKRD36BP1Q96IX9 119 aa16.28■□□□□ 0.2
SMPDL3A-201ENST00000368440 FNBP1Q96RU3 617 aa16.28■□□□□ 0.2
SMPDL3A-201ENST00000368440 CLSTN3Q9BQT9 956 aa16.28■□□□□ 0.2
SMPDL3A-201ENST00000368440 GTPBP4Q9BZE4 634 aaKnown RBP16.28■□□□□ 0.2
SMPDL3A-201ENST00000368440 AGAP1Q9UPQ3 857 aa16.28■□□□□ 0.2
SMPDL3A-201ENST00000368440 SSX2IPQ9Y2D8 614 aa16.28■□□□□ 0.2
SMPDL3A-201ENST00000368440 M0QZQ0 153 aa16.27■□□□□ 0.2
SMPDL3A-201ENST00000368440 NCK2O43639 380 aa16.27■□□□□ 0.2
SMPDL3A-201ENST00000368440 CCNE1P24864 410 aa16.27■□□□□ 0.2
SMPDL3A-201ENST00000368440 CLCN4P51793 760 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms