RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 ING2Q9H160 280 aa16.38■□□□□ 0.21
PTPRF-201ENST00000359947 RTN2O75298 545 aa16.38■□□□□ 0.21
PTPRF-201ENST00000359947 TAP1Q03518 808 aa16.38■□□□□ 0.21
PTPRF-201ENST00000359947 ORC2Q13416 577 aaPredicted RBP16.38■□□□□ 0.21
PTPRF-201ENST00000359947 EPC2Q52LR7 807 aa16.38■□□□□ 0.21
PTPRF-201ENST00000359947 MAP1SQ66K74 1059 aaPredicted RBP16.38■□□□□ 0.21
PTPRF-201ENST00000359947 PLEKHH3Q7Z736 793 aa16.38■□□□□ 0.21
PTPRF-201ENST00000359947 GUF1Q8N442 669 aaKnown RBP16.38■□□□□ 0.21
PTPRF-201ENST00000359947 IPMKQ8NFU5 416 aa16.38■□□□□ 0.21
PTPRF-201ENST00000359947 OPTNQ96CV9 577 aa16.38■□□□□ 0.21
PTPRF-201ENST00000359947 SELENONQ9NZV5 590 aa16.38■□□□□ 0.21
PTPRF-201ENST00000359947 ADCY10Q96PN6 1610 aa16.38■□□□□ 0.21
PTPRF-201ENST00000359947 H0Y3Z8 333 aa16.38■□□□□ 0.21
PTPRF-201ENST00000359947 PDCLQ13371 301 aa16.38■□□□□ 0.21
PTPRF-201ENST00000359947 ZRANB3Q5FWF4 1079 aa16.38■□□□□ 0.21
PTPRF-201ENST00000359947 TUBB6Q9BUF5 446 aa16.38■□□□□ 0.21
PTPRF-201ENST00000359947 NYAP2Q9P242 653 aa16.38■□□□□ 0.21
PTPRF-201ENST00000359947 SPATA31A5Q5VU36 1347 aa16.38■□□□□ 0.21
PTPRF-201ENST00000359947 SPATA31A7Q8IWB4 1347 aa16.38■□□□□ 0.21
PTPRF-201ENST00000359947 ZNF500O60304 480 aaPredicted RBP16.38■□□□□ 0.21
PTPRF-201ENST00000359947 PCSK1P29120 753 aa16.38■□□□□ 0.21
PTPRF-201ENST00000359947 GYS2P54840 703 aa16.38■□□□□ 0.21
PTPRF-201ENST00000359947 C6orf203Q9P0P8 240 aaPredicted RBP16.38■□□□□ 0.21
PTPRF-201ENST00000359947 DDNO94850 711 aaPredicted RBP16.38■□□□□ 0.21
PTPRF-201ENST00000359947 MAGOHP61326 146 aaKnown RBP16.38■□□□□ 0.21
PTPRF-201ENST00000359947 STOX1Q6ZVD7 989 aa16.38■□□□□ 0.21
PTPRF-201ENST00000359947 CLTCQ00610 1675 aaKnown RBP16.38■□□□□ 0.21
PTPRF-201ENST00000359947 MAP3K13O43283 966 aa16.37■□□□□ 0.21
PTPRF-201ENST00000359947 FGFR4P22455 802 aa16.37■□□□□ 0.21
PTPRF-201ENST00000359947 BEND6Q5SZJ8 279 aaPredicted RBP16.37■□□□□ 0.21
PTPRF-201ENST00000359947 PTRHD1Q6GMV3 140 aaKnown RBP16.37■□□□□ 0.21
PTPRF-201ENST00000359947 FMR1NBQ8N0W7 255 aaPredicted RBP16.37■□□□□ 0.21
PTPRF-201ENST00000359947 MAGEB10Q96LZ2 347 aaPredicted RBP16.37■□□□□ 0.21
PTPRF-201ENST00000359947 WDR19Q8NEZ3 1342 aa16.37■□□□□ 0.21
PTPRF-201ENST00000359947 PITPNM2Q9BZ72 1349 aa16.37■□□□□ 0.21
PTPRF-201ENST00000359947 PLA2R1Q13018 1463 aa16.37■□□□□ 0.21
PTPRF-201ENST00000359947 AGRPO00253 132 aa16.37■□□□□ 0.21
PTPRF-201ENST00000359947 RASA1P20936 1047 aa16.37■□□□□ 0.21
PTPRF-201ENST00000359947 RGS9BPQ6ZS82 235 aa16.37■□□□□ 0.21
PTPRF-201ENST00000359947 TADA3O75528 432 aa16.37■□□□□ 0.21
PTPRF-201ENST00000359947 PTPRN2Q92932 1015 aa16.37■□□□□ 0.21
PTPRF-201ENST00000359947 TARS2Q9BW92 718 aaKnown RBP16.37■□□□□ 0.21
PTPRF-201ENST00000359947 STARD7Q9NQZ5 370 aa16.37■□□□□ 0.21
PTPRF-201ENST00000359947 TECPR2O15040 1411 aa16.37■□□□□ 0.21
PTPRF-201ENST00000359947 DNAJC8O75937 253 aaPredicted RBP16.37■□□□□ 0.21
PTPRF-201ENST00000359947 NTSR2O95665 410 aa16.37■□□□□ 0.21
PTPRF-201ENST00000359947 STAG3L1P0CL83 205 aa16.37■□□□□ 0.21
PTPRF-201ENST00000359947 NBPF9Q3BBW0 867 aa16.37■□□□□ 0.21
PTPRF-201ENST00000359947 MDH1BQ5I0G3 518 aa16.37■□□□□ 0.21
PTPRF-201ENST00000359947 ZFYVE19Q96K21 471 aa16.37■□□□□ 0.21
PTPRF-201ENST00000359947 IGFLR1Q9H665 355 aa16.37■□□□□ 0.21
PTPRF-201ENST00000359947 CLTCL1P53675 1640 aa16.37■□□□□ 0.21
PTPRF-201ENST00000359947 RRN3P2A6NIE6 340 aa16.37■□□□□ 0.21
PTPRF-201ENST00000359947 ZFP69BQ9UJL9 534 aa16.37■□□□□ 0.21
PTPRF-201ENST00000359947 NAF1Q96HR8 494 aaKnown RBP16.36■□□□□ 0.21
PTPRF-201ENST00000359947 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.36■□□□□ 0.215e-8■■■■□ 22.3
PTPRF-201ENST00000359947 JMJD4Q9H9V9 463 aa16.36■□□□□ 0.21
PTPRF-201ENST00000359947 RAB6BQ9NRW1 208 aa16.36■□□□□ 0.21
PTPRF-201ENST00000359947 EHD2Q9NZN4 543 aa16.36■□□□□ 0.21
PTPRF-201ENST00000359947 ITIH6Q6UXX5 1313 aa16.36■□□□□ 0.21
PTPRF-201ENST00000359947 GTPBP10A4D1E9 387 aaKnown RBP16.36■□□□□ 0.21
PTPRF-201ENST00000359947 ATMINO43313 823 aaPredicted RBP16.36■□□□□ 0.21
PTPRF-201ENST00000359947 ZNF286BP0CG31 522 aa16.36■□□□□ 0.21
PTPRF-201ENST00000359947 RFC5P40937 340 aa16.36■□□□□ 0.21
PTPRF-201ENST00000359947 RNF168Q8IYW5 571 aaPredicted RBP16.36■□□□□ 0.21
PTPRF-201ENST00000359947 C1orf167Q5SNV9 1468 aa16.36■□□□□ 0.21
PTPRF-201ENST00000359947 HIF1AQ16665 826 aa16.36■□□□□ 0.21
PTPRF-201ENST00000359947 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.36■□□□□ 0.211e-7■□□□□ 8.6
PTPRF-201ENST00000359947 MIB1Q86YT6 1006 aa16.36■□□□□ 0.21
PTPRF-201ENST00000359947 NRBF2Q96F24 287 aa16.36■□□□□ 0.21
PTPRF-201ENST00000359947 COLEC11Q9BWP8 271 aa16.36■□□□□ 0.21
PTPRF-201ENST00000359947 CD274Q9NZQ7 290 aa16.36■□□□□ 0.21
PTPRF-201ENST00000359947 APEX2Q9UBZ4 518 aa16.36■□□□□ 0.21
PTPRF-201ENST00000359947 CHORDC1Q9UHD1 332 aaPredicted RBP16.36■□□□□ 0.21
PTPRF-201ENST00000359947 TRAF3IP3Q9Y228 551 aa16.36■□□□□ 0.21
PTPRF-201ENST00000359947 CEP152O94986 1710 aa16.36■□□□□ 0.21
PTPRF-201ENST00000359947 SLC9A5Q14940 896 aa16.36■□□□□ 0.21
PTPRF-201ENST00000359947 DACH2Q96NX9 599 aa16.36■□□□□ 0.21
PTPRF-201ENST00000359947 CHCHD3Q9NX63 227 aaKnown RBP16.36■□□□□ 0.21
PTPRF-201ENST00000359947 ANGPTL2Q9UKU9 493 aa16.36■□□□□ 0.21
PTPRF-201ENST00000359947 CDV3Q9UKY7 258 aaKnown RBP16.36■□□□□ 0.21
PTPRF-201ENST00000359947 LRRC8EQ6NSJ5 796 aa16.36■□□□□ 0.21
PTPRF-201ENST00000359947 B4GALNT2Q8NHY0 566 aa16.36■□□□□ 0.21
PTPRF-201ENST00000359947 BTN2A2Q8WVV5 523 aa16.36■□□□□ 0.21
PTPRF-201ENST00000359947 ARHGEF38Q9NXL2 777 aa16.36■□□□□ 0.21
PTPRF-201ENST00000359947 MAP10Q9P2G4 905 aa16.36■□□□□ 0.21
PTPRF-201ENST00000359947 PDXKO00764 312 aa16.36■□□□□ 0.21
PTPRF-201ENST00000359947 RALBP11234 206 aa16.36■□□□□ 0.21
PTPRF-201ENST00000359947 BRD2P25440 801 aaKnown RBP16.36■□□□□ 0.21
PTPRF-201ENST00000359947 ERFP50548 548 aa16.36■□□□□ 0.21
PTPRF-201ENST00000359947 ACER1Q8TDN7 264 aa16.36■□□□□ 0.21
PTPRF-201ENST00000359947 IL18RAPO95256 599 aa16.35■□□□□ 0.21
PTPRF-201ENST00000359947 CCDC33Q8N5R6 958 aa16.35■□□□□ 0.21
PTPRF-201ENST00000359947 MBL2P11226 248 aaPredicted RBP16.35■□□□□ 0.21
PTPRF-201ENST00000359947 ODC1P11926 461 aa16.35■□□□□ 0.21
PTPRF-201ENST00000359947 DAB2P98082 770 aa16.35■□□□□ 0.21
PTPRF-201ENST00000359947 CAV1Q03135 178 aa16.35■□□□□ 0.21
PTPRF-201ENST00000359947 CCDC85BQ15834 202 aaPredicted RBP16.35■□□□□ 0.21
PTPRF-201ENST00000359947 C11orf74Q86VG3 221 aa16.35■□□□□ 0.21
PTPRF-201ENST00000359947 CATSPER3Q86XQ3 398 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms