RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 GYPCP04921 128 aa4.37□□□□□ -1.71
NEDD4-201ENST00000338963 CYP1A2P05177 515 aa4.37□□□□□ -1.71
NEDD4-201ENST00000338963 C8BP07358 591 aa4.37□□□□□ -1.71
NEDD4-201ENST00000338963 PGM1P36871 562 aa4.37□□□□□ -1.71
NEDD4-201ENST00000338963 SERPINB10P48595 397 aa4.37□□□□□ -1.71
NEDD4-201ENST00000338963 PRIM2P49643 509 aa4.37□□□□□ -1.71
NEDD4-201ENST00000338963 CCR3P51677 355 aa4.37□□□□□ -1.71
NEDD4-201ENST00000338963 SLC18A1P54219 525 aa4.37□□□□□ -1.71
NEDD4-201ENST00000338963 PNOCQ13519 176 aa4.37□□□□□ -1.71
NEDD4-201ENST00000338963 SEMA3AQ14563 771 aa4.37□□□□□ -1.71
NEDD4-201ENST00000338963 LPCAT2Q7L5N7 544 aa4.37□□□□□ -1.71
NEDD4-201ENST00000338963 PLPP6Q8IY26 295 aa4.37□□□□□ -1.71
NEDD4-201ENST00000338963 SIMC1Q8NDZ2 872 aa4.37□□□□□ -1.71
NEDD4-201ENST00000338963 OSBPL8Q9BZF1 889 aa4.37□□□□□ -1.71
NEDD4-201ENST00000338963 FOXP3Q9BZS1 431 aa4.37□□□□□ -1.71
NEDD4-201ENST00000338963 FRMD4AQ9P2Q2 1039 aaPredicted RBP4.37□□□□□ -1.71
NEDD4-201ENST00000338963 DTNAQ9Y4J8 743 aa4.37□□□□□ -1.71
NEDD4-201ENST00000338963 PCDHA13Q9Y5I0 950 aa4.37□□□□□ -1.71
NEDD4-201ENST00000338963 ABCC3O15438 1527 aa4.37□□□□□ -1.71
NEDD4-201ENST00000338963 CARMIL3Q8ND23 1372 aa4.37□□□□□ -1.71
NEDD4-201ENST00000338963 OR6C65A6NJZ3 312 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 RNF113AO15541 343 aaKnown RBP4.36□□□□□ -1.71
NEDD4-201ENST00000338963 ICMTO60725 284 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 CCDC130P13994 396 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 LRPAP1P30533 357 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 VPS41P49754 854 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 KCNC4Q03721 635 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 NFIL3Q16649 462 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 RGS9BPQ6ZS82 235 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP4.36□□□□□ -1.71
NEDD4-201ENST00000338963 MB21D1Q8N884 522 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 SLC2A14Q8TDB8 520 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 PMM1Q92871 262 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 MTBPQ96DY7 904 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 PLEKHA8Q96JA3 519 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 TRIM47Q96LD4 638 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 PLEKHF1Q96S99 279 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 TAS2R1Q9NYW7 299 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 DNAJC16Q9Y2G8 782 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 GIMAP1-GIMAP5A0A087WTJ2 511 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 LOC105371267A0A1B0GV96 52 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 CCDC194A0A1B0GVG4 234 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 SIGLEC16A6NMB1 481 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 TTLL13PA6NNM8 815 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 C2CD2LO14523 706 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 TXNDC9O14530 226 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 GAS2O43903 313 aaKnown RBP4.36□□□□□ -1.71
NEDD4-201ENST00000338963 PAHP00439 452 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 PSMA4P25789 261 aaKnown RBP4.36□□□□□ -1.71
NEDD4-201ENST00000338963 GTF2H1P32780 548 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 WDR72Q3MJ13 1102 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 KCTD21Q4G0X4 260 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 CEP55Q53EZ4 464 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 DUS1LQ6P1R4 473 aaKnown RBP4.36□□□□□ -1.71
NEDD4-201ENST00000338963 TMC3Q7Z5M5 1100 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 CCDC82Q8N4S0 544 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 SYN2Q92777 582 aaPredicted RBP4.36□□□□□ -1.71
NEDD4-201ENST00000338963 GIMAP5Q96F15 307 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 SECISBP2Q96T21 854 aaKnown RBP4.36□□□□□ -1.71
NEDD4-201ENST00000338963 LIN7BQ9HAP6 207 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 C17orf75Q9HAS0 396 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 RIC8AQ9NPQ8 531 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 DAPK2Q9UIK4 370 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 SOX13Q9UN79 622 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 ZNF532Q9HCE3 1301 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 ARHGEF40Q8TER5 1519 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 ATP10BO94823 1461 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 A0A087WZG4 1122 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 A0A1W2PRG0 241 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 GTPBP10A4D1E9 387 aaKnown RBP4.36□□□□□ -1.71
NEDD4-201ENST00000338963 BTNL10A8MVZ5 291 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 PSMA7O14818 248 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 PDE8AO60658 829 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 KCNJ13O60928 360 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 PGM3O95394 542 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 HLA-DRAP01903 254 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 EEF2P13639 858 aaKnown RBP4.36□□□□□ -1.71
NEDD4-201ENST00000338963 ACAT1P24752 427 aaKnown RBP4.36□□□□□ -1.71
NEDD4-201ENST00000338963 TTLL12Q14166 644 aaPredicted RBP4.36□□□□□ -1.71
NEDD4-201ENST00000338963 RUNDC3AQ59EK9 446 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 CAVIN4Q5BKX8 364 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 RELL1Q8IUW5 271 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 SGK3Q96BR1 496 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 MAELQ96JY0 434 aaKnown RBP4.36□□□□□ -1.71
NEDD4-201ENST00000338963 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP4.36□□□□□ -1.71
NEDD4-201ENST00000338963 ACAT2Q9BWD1 397 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 RMND5AQ9H871 391 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 USP29Q9HBJ7 922 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 KIAA1586Q9HCI6 787 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 IPPQ9Y573 584 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 PCDHGA11Q9Y5H2 935 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 A0A087WXM4 84 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 TCP11X1B4DZS4 312 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 GNPATO15228 680 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 SURF6O75683 361 aaKnown RBP4.36□□□□□ -1.71
NEDD4-201ENST00000338963 ETS2P15036 469 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 CYP4F8P98187 520 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 THOC5Q13769 683 aaKnown RBP4.36□□□□□ -1.71
NEDD4-201ENST00000338963 KCNJ8Q15842 424 aa4.36□□□□□ -1.71
NEDD4-201ENST00000338963 SPRED3Q2MJR0 410 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms