RNA–Protein interactions for RNA: ENST00000337841.4

SPTLC1-202, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SPTLC1, Length 946 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-202ENST00000337841 USP41Q3LFD5 358 aa12.85□□□□□ -0.35
SPTLC1-202ENST00000337841 ANO6Q4KMQ2 910 aa12.85□□□□□ -0.35
SPTLC1-202ENST00000337841 TCERG1LQ5VWI1 586 aa12.85□□□□□ -0.35
SPTLC1-202ENST00000337841 KIAA1841Q6NSI8 718 aa12.85□□□□□ -0.35
SPTLC1-202ENST00000337841 FUT10Q6P4F1 479 aa12.85□□□□□ -0.35
SPTLC1-202ENST00000337841 DSTYKQ6XUX3 929 aa12.85□□□□□ -0.35
SPTLC1-202ENST00000337841 TMC7Q7Z402 723 aa12.85□□□□□ -0.35
SPTLC1-202ENST00000337841 VPS52Q8N1B4 723 aa12.85□□□□□ -0.35
SPTLC1-202ENST00000337841 C1orf127Q8N9H9 656 aa12.85□□□□□ -0.35
SPTLC1-202ENST00000337841 PLEKHO2Q8TD55 490 aa12.85□□□□□ -0.35
SPTLC1-202ENST00000337841 ZNF516Q92618 1163 aa12.85□□□□□ -0.35
SPTLC1-202ENST00000337841 ZNF560Q96MR9 790 aa12.85□□□□□ -0.35
SPTLC1-202ENST00000337841 MED15Q96RN5 788 aa12.85□□□□□ -0.35
SPTLC1-202ENST00000337841 MTMR12Q9C0I1 747 aa12.85□□□□□ -0.35
SPTLC1-202ENST00000337841 NGRNQ9NPE2 291 aaKnown RBP12.85□□□□□ -0.35
SPTLC1-202ENST00000337841 MARCH5Q9NX47 278 aa12.85□□□□□ -0.35
SPTLC1-202ENST00000337841 CACNG4Q9UBN1 327 aa12.85□□□□□ -0.35
SPTLC1-202ENST00000337841 C4BPAP04003 597 aaKnown RBP12.84□□□□□ -0.35
SPTLC1-202ENST00000337841 SOD2P04179 222 aa12.84□□□□□ -0.35
SPTLC1-202ENST00000337841 IGFBP4P22692 258 aa12.84□□□□□ -0.35
SPTLC1-202ENST00000337841 POLR2BP30876 1174 aaKnown RBP12.84□□□□□ -0.35
SPTLC1-202ENST00000337841 TAF6P49848 677 aa12.84□□□□□ -0.35
SPTLC1-202ENST00000337841 MARSP56192 900 aaKnown RBP12.84□□□□□ -0.35
SPTLC1-202ENST00000337841 LILRA4P59901 499 aa12.84□□□□□ -0.35
SPTLC1-202ENST00000337841 SV2CQ496J9 727 aa12.84□□□□□ -0.35
SPTLC1-202ENST00000337841 DCAF17Q5H9S7 520 aaPredicted RBP12.84□□□□□ -0.35
SPTLC1-202ENST00000337841 FAM171A1Q5VUB5 890 aa12.84□□□□□ -0.35
SPTLC1-202ENST00000337841 C11orf57Q6ZUT1 292 aaPredicted RBP12.84□□□□□ -0.35
SPTLC1-202ENST00000337841 SV2AQ7L0J3 742 aa12.84□□□□□ -0.35
SPTLC1-202ENST00000337841 TMEM173Q86WV6 379 aaPredicted RBP12.84□□□□□ -0.35
SPTLC1-202ENST00000337841 LRRC52Q8N7C0 313 aa12.84□□□□□ -0.35
SPTLC1-202ENST00000337841 HASPINQ8TF76 798 aa12.84□□□□□ -0.35
SPTLC1-202ENST00000337841 BCL7CQ8WUZ0 217 aaPredicted RBP12.84□□□□□ -0.35
SPTLC1-202ENST00000337841 MRPL38Q96DV4 380 aaKnown RBP12.84□□□□□ -0.35
SPTLC1-202ENST00000337841 BPIFA3Q9BQP9 254 aa12.84□□□□□ -0.35
SPTLC1-202ENST00000337841 GZF1Q9H116 711 aaPredicted RBP12.84□□□□□ -0.35
SPTLC1-202ENST00000337841 TLR9Q9NR96 1032 aa12.84□□□□□ -0.35
SPTLC1-202ENST00000337841 NFE2L3Q9Y4A8 694 aa12.84□□□□□ -0.35
SPTLC1-202ENST00000337841 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.84□□□□□ -0.35
SPTLC1-202ENST00000337841 EPOPA6NHQ4 379 aa12.83□□□□□ -0.36
SPTLC1-202ENST00000337841 BECN2A8MW95 431 aa12.83□□□□□ -0.36
SPTLC1-202ENST00000337841 KPNA7A9QM74 516 aa12.83□□□□□ -0.36
SPTLC1-202ENST00000337841 F8W810 466 aa12.83□□□□□ -0.36
SPTLC1-202ENST00000337841 CST3P01034 146 aaPredicted RBP12.83□□□□□ -0.36
SPTLC1-202ENST00000337841 TRIM49P0CI25 452 aa12.83□□□□□ -0.36
SPTLC1-202ENST00000337841 TRIM49CP0CI26 452 aa12.83□□□□□ -0.36
SPTLC1-202ENST00000337841 CDK11BP21127 795 aaKnown RBP12.83□□□□□ -0.36
SPTLC1-202ENST00000337841 ATICP31939 592 aa12.83□□□□□ -0.36
SPTLC1-202ENST00000337841 MTIF2P46199 727 aaKnown RBP12.83□□□□□ -0.36
SPTLC1-202ENST00000337841 BRCC3P46736 316 aa12.83□□□□□ -0.36
SPTLC1-202ENST00000337841 GCLMP48507 274 aa12.83□□□□□ -0.36
SPTLC1-202ENST00000337841 ZNF165P49910 485 aa12.83□□□□□ -0.36
SPTLC1-202ENST00000337841 ERVFC1P60507 584 aa12.83□□□□□ -0.36
SPTLC1-202ENST00000337841 MYL5Q02045 173 aa12.83□□□□□ -0.36
SPTLC1-202ENST00000337841 CETN1Q12798 172 aa12.83□□□□□ -0.36
SPTLC1-202ENST00000337841 SGSM1Q2NKQ1 1148 aa12.83□□□□□ -0.36
SPTLC1-202ENST00000337841 ZACNQ401N2 412 aa12.83□□□□□ -0.36
SPTLC1-202ENST00000337841 TIGD5Q53EQ6 642 aa12.83□□□□□ -0.36
SPTLC1-202ENST00000337841 C1orf220Q5T0J3 134 aa12.83□□□□□ -0.36
SPTLC1-202ENST00000337841 KRT39Q6A163 491 aa12.83□□□□□ -0.36
SPTLC1-202ENST00000337841 PDXDC1Q6P996 788 aa12.83□□□□□ -0.36
SPTLC1-202ENST00000337841 CD300LGQ6UXG3 332 aa12.83□□□□□ -0.36
SPTLC1-202ENST00000337841 Q7L0L9 218 aa12.83□□□□□ -0.36
SPTLC1-202ENST00000337841 CEP57Q86XR8 500 aa12.83□□□□□ -0.36
SPTLC1-202ENST00000337841 GPR65Q8IYL9 337 aa12.83□□□□□ -0.36
SPTLC1-202ENST00000337841 CCDC150Q8NCX0 1101 aa12.83□□□□□ -0.36
SPTLC1-202ENST00000337841 APPL2Q8NEU8 664 aa12.83□□□□□ -0.36
SPTLC1-202ENST00000337841 ANKRD20A12PQ8NF67 263 aa12.83□□□□□ -0.36
SPTLC1-202ENST00000337841 GDPD5Q8WTR4 605 aa12.83□□□□□ -0.36
SPTLC1-202ENST00000337841 PPP2R3CQ969Q6 453 aa12.83□□□□□ -0.36
SPTLC1-202ENST00000337841 HPDLQ96IR7 371 aa12.83□□□□□ -0.36
SPTLC1-202ENST00000337841 SUSD3Q96L08 255 aa12.83□□□□□ -0.36
SPTLC1-202ENST00000337841 CDX2Q99626 313 aaPredicted RBP12.83□□□□□ -0.36
SPTLC1-202ENST00000337841 ANP32EQ9BTT0 268 aa12.83□□□□□ -0.36
SPTLC1-202ENST00000337841 TTPALQ9BTX7 342 aa12.83□□□□□ -0.36
SPTLC1-202ENST00000337841 FUCA2Q9BTY2 467 aa12.83□□□□□ -0.36
SPTLC1-202ENST00000337841 HERC2P3Q9BVR0 1158 aa12.83□□□□□ -0.36
SPTLC1-202ENST00000337841 GPR62Q9BZJ7 368 aa12.83□□□□□ -0.36
SPTLC1-202ENST00000337841 MMRN2Q9H8L6 949 aa12.83□□□□□ -0.36
SPTLC1-202ENST00000337841 TMEM8AQ9HCN3 771 aa12.83□□□□□ -0.36
SPTLC1-202ENST00000337841 ENTPD7Q9NQZ7 604 aa12.83□□□□□ -0.36
SPTLC1-202ENST00000337841 MRPL17Q9NRX2 175 aaKnown RBP12.83□□□□□ -0.36
SPTLC1-202ENST00000337841 PTPRJQ12913 1337 aa12.83□□□□□ -0.36
SPTLC1-202ENST00000337841 PPEF2O14830 753 aa12.82□□□□□ -0.36
SPTLC1-202ENST00000337841 SYN3O14994 580 aa12.82□□□□□ -0.36
SPTLC1-202ENST00000337841 HUS1O60921 280 aa12.82□□□□□ -0.36
SPTLC1-202ENST00000337841 N4BP1O75113 896 aaKnown RBP12.82□□□□□ -0.36
SPTLC1-202ENST00000337841 EFEMP2O95967 443 aa12.82□□□□□ -0.36
SPTLC1-202ENST00000337841 URODP06132 367 aa12.82□□□□□ -0.36
SPTLC1-202ENST00000337841 TPM2P07951 284 aa12.82□□□□□ -0.36
SPTLC1-202ENST00000337841 CTSAP10619 480 aa12.82□□□□□ -0.36
SPTLC1-202ENST00000337841 PRKCSHP14314 528 aaPredicted RBP12.82□□□□□ -0.36
SPTLC1-202ENST00000337841 POU3F3P20264 500 aaPredicted RBP12.82□□□□□ -0.36
SPTLC1-202ENST00000337841 FGFR3P22607 806 aa12.82□□□□□ -0.36
SPTLC1-202ENST00000337841 DNAJB1P25685 340 aa12.82□□□□□ -0.36
SPTLC1-202ENST00000337841 CA8P35219 290 aa12.82□□□□□ -0.36
SPTLC1-202ENST00000337841 GLUD2P49448 558 aa12.82□□□□□ -0.36
SPTLC1-202ENST00000337841 PPP3CAQ08209 521 aa12.82□□□□□ -0.36
SPTLC1-202ENST00000337841 NCOA4Q13772 614 aa12.82□□□□□ -0.36
SPTLC1-202ENST00000337841 SMC1AQ14683 1233 aaKnown RBP12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms