RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 C4orf17Q53FE4 359 aa1.81□□□□□ -2.12
LINC00643-201ENST00000334389 MARCH8Q5T0T0 291 aa1.81□□□□□ -2.12
LINC00643-201ENST00000334389 TRIM69Q86WT6 500 aa1.81□□□□□ -2.12
LINC00643-201ENST00000334389 CD302Q8IX05 232 aa1.81□□□□□ -2.12
LINC00643-201ENST00000334389 ST6GALNAC3Q8NDV1 305 aa1.81□□□□□ -2.12
LINC00643-201ENST00000334389 DENND6BQ8NEG7 585 aa1.81□□□□□ -2.12
LINC00643-201ENST00000334389 DTX3LQ8TDB6 740 aa1.81□□□□□ -2.12
LINC00643-201ENST00000334389 SSH3Q8TE77 659 aa1.81□□□□□ -2.12
LINC00643-201ENST00000334389 LRFN5Q96NI6 719 aa1.81□□□□□ -2.12
LINC00643-201ENST00000334389 BBC3Q96PG8 261 aaPredicted RBP1.81□□□□□ -2.12
LINC00643-201ENST00000334389 GAD1Q99259 594 aa1.81□□□□□ -2.12
LINC00643-201ENST00000334389 EDEM2Q9BV94 578 aa1.81□□□□□ -2.12
LINC00643-201ENST00000334389 CELF4Q9BZC1 486 aaKnown RBP1.81□□□□□ -2.12
LINC00643-201ENST00000334389 RAB33BQ9H082 229 aa1.81□□□□□ -2.12
LINC00643-201ENST00000334389 CHST11Q9NPF2 352 aa1.81□□□□□ -2.12
LINC00643-201ENST00000334389 IQSEC3Q9UPP2 1182 aaPredicted RBP1.81□□□□□ -2.12
LINC00643-201ENST00000334389 TRIOBPQ9H2D6 2365 aa1.81□□□□□ -2.12
LINC00643-201ENST00000334389 PTPRJQ12913 1337 aa1.81□□□□□ -2.12
LINC00643-201ENST00000334389 OR6C75A6NL08 312 aa1.81□□□□□ -2.12
LINC00643-201ENST00000334389 M0QZQ0 153 aa1.81□□□□□ -2.12
LINC00643-201ENST00000334389 KDM4AO75164 1064 aa1.81□□□□□ -2.12
LINC00643-201ENST00000334389 TTLL1O95922 423 aa1.81□□□□□ -2.12
LINC00643-201ENST00000334389 CHRNA1P02708 482 aa1.81□□□□□ -2.12
LINC00643-201ENST00000334389 CKMT1AP12532 417 aa1.81□□□□□ -2.12
LINC00643-201ENST00000334389 KCNE1P15382 129 aa1.81□□□□□ -2.12
LINC00643-201ENST00000334389 CD19P15391 556 aa1.81□□□□□ -2.12
LINC00643-201ENST00000334389 GNLYP22749 145 aa1.81□□□□□ -2.12
LINC00643-201ENST00000334389 ADRA1BP35368 520 aa1.81□□□□□ -2.12
LINC00643-201ENST00000334389 CTSKP43235 329 aa1.81□□□□□ -2.12
LINC00643-201ENST00000334389 SLC7A9P82251 487 aa1.81□□□□□ -2.12
LINC00643-201ENST00000334389 EIF4HQ15056 248 aaKnown RBP1.81□□□□□ -2.12
LINC00643-201ENST00000334389 FBXL19-AS1Q494R0 122 aa1.81□□□□□ -2.12
LINC00643-201ENST00000334389 DNAJC21Q5F1R6 531 aaKnown RBP1.81□□□□□ -2.12
LINC00643-201ENST00000334389 KCNT1Q5JUK3 1230 aa1.81□□□□□ -2.12
LINC00643-201ENST00000334389 ZNF618Q5T7W0 954 aa1.81□□□□□ -2.12
LINC00643-201ENST00000334389 OTUD1Q5VV17 481 aaPredicted RBP1.81□□□□□ -2.12
LINC00643-201ENST00000334389 COLGALT2Q8IYK4 626 aa1.81□□□□□ -2.12
LINC00643-201ENST00000334389 C12orf50Q8NA57 414 aaPredicted RBP1.81□□□□□ -2.12
LINC00643-201ENST00000334389 SPATA5Q8NB90 893 aa1.81□□□□□ -2.12
LINC00643-201ENST00000334389 MYRIPQ8NFW9 859 aa1.81□□□□□ -2.12
LINC00643-201ENST00000334389 TSEN15Q8WW01 171 aaKnown RBP1.81□□□□□ -2.12
LINC00643-201ENST00000334389 ARNTL2Q8WYA1 636 aa1.81□□□□□ -2.12
LINC00643-201ENST00000334389 SLC45A3Q96JT2 553 aa1.81□□□□□ -2.12
LINC00643-201ENST00000334389 IP6K3Q96PC2 410 aa1.81□□□□□ -2.12
LINC00643-201ENST00000334389 ALPK1Q96QP1 1244 aa1.81□□□□□ -2.12
LINC00643-201ENST00000334389 HAPLN3Q96S86 360 aa1.81□□□□□ -2.12
LINC00643-201ENST00000334389 ENKD1Q9H0I2 346 aa1.81□□□□□ -2.12
LINC00643-201ENST00000334389 PCIF1Q9H4Z3 704 aa1.81□□□□□ -2.12
LINC00643-201ENST00000334389 POLMQ9NP87 494 aaPredicted RBP1.81□□□□□ -2.12
LINC00643-201ENST00000334389 TNFRSF10DQ9UBN6 386 aa1.81□□□□□ -2.12
LINC00643-201ENST00000334389 MRPL11Q9Y3B7 192 aaKnown RBP1.81□□□□□ -2.12
LINC00643-201ENST00000334389 PCDHGA10Q9Y5H3 936 aa1.81□□□□□ -2.12
LINC00643-201ENST00000334389 ITPR3Q14573 2671 aa1.81□□□□□ -2.12
LINC00643-201ENST00000334389 VPS13DQ5THJ4 4388 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 A0A1B0GTL3 188 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 HBP1O60381 514 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 PQBP1O60828 265 aaKnown RBP1.8□□□□□ -2.12
LINC00643-201ENST00000334389 SMIM10L2AP0DMW4 78 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 SMIM10L2BP0DMW5 78 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 MYBP10242 640 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 RASA1P20936 1047 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 CCND2P30279 289 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 ADD1P35611 737 aaKnown RBP1.8□□□□□ -2.12
LINC00643-201ENST00000334389 ALDH1A3P47895 512 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 CLCNKBP51801 687 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 KLRB1Q12918 225 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 GRM1Q13255 1194 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 AP3B2Q13367 1082 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 ZNF211Q13398 564 aaPredicted RBP1.8□□□□□ -2.12
LINC00643-201ENST00000334389 PLS1Q14651 629 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 AASDHQ4L235 1098 aaPredicted RBP1.8□□□□□ -2.12
LINC00643-201ENST00000334389 TMEM259Q4ZIN3 620 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 PACS2Q86VP3 889 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 ATCAYQ86WG3 371 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 SRBD1Q8N5C6 995 aaKnown RBP1.8□□□□□ -2.12
LINC00643-201ENST00000334389 TEX29Q8N6K0 151 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 GPATCH11Q8N954 259 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 C7orf57Q8NEG2 295 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 DBF4BQ8NFT6 615 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 OR8K5Q8NH50 307 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 IPO4Q8TEX9 1081 aaKnown RBP1.8□□□□□ -2.12
LINC00643-201ENST00000334389 BBXQ8WY36 941 aaPredicted RBP1.8□□□□□ -2.12
LINC00643-201ENST00000334389 SMARCD2Q92925 531 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 GTPBP3Q969Y2 492 aaKnown RBP1.8□□□□□ -2.12
LINC00643-201ENST00000334389 LTV1Q96GA3 475 aaPredicted RBP1.8□□□□□ -2.12
LINC00643-201ENST00000334389 FAM83CQ9BQN1 747 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 PHF20Q9BVI0 1012 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 APOL6Q9BWW8 343 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 SLC12A9Q9BXP2 914 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 KCTD5Q9NXV2 234 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 SHROOM3Q8TF72 1996 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 A0A1B0GTQ1 180 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 A0A1B0GUH1 482 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 TMEM110-MUSTN1A8MSY1 372 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 WNT7AO00755 349 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 SLC9A3R1O14745 358 aaPredicted RBP1.8□□□□□ -2.12
LINC00643-201ENST00000334389 VEGFDO43915 354 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 CD2BP2O95400 341 aaKnown RBP1.8□□□□□ -2.12
LINC00643-201ENST00000334389 LIPCP11150 499 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 LRPAP1P30533 357 aa1.8□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms