RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 C12orf50Q8NA57 414 aaPredicted RBP14.26□□□□□ -0.13
CCDC88C-201ENST00000331194 SH3TC2Q8TF17 1288 aa14.26□□□□□ -0.13
CCDC88C-201ENST00000331194 CCDC77Q9BR77 488 aa14.26□□□□□ -0.13
CCDC88C-201ENST00000331194 TIPINQ9BVW5 301 aa14.26□□□□□ -0.13
CCDC88C-201ENST00000331194 SUDS3Q9H7L9 328 aaPredicted RBP14.26□□□□□ -0.13
CCDC88C-201ENST00000331194 CYLDQ9NQC7 956 aa14.26□□□□□ -0.13
CCDC88C-201ENST00000331194 MTMR4Q9NYA4 1195 aa14.26□□□□□ -0.13
CCDC88C-201ENST00000331194 TAS2R1Q9NYW7 299 aa14.26□□□□□ -0.13
CCDC88C-201ENST00000331194 SBDSQ9Y3A5 250 aaKnown RBP eCLIP14.26□□□□□ -0.13
CCDC88C-201ENST00000331194 MROH7Q68CQ1 1323 aa14.26□□□□□ -0.13
CCDC88C-201ENST00000331194 MAP3K7O43318 606 aa14.26□□□□□ -0.13
CCDC88C-201ENST00000331194 LMNAP02545 664 aaKnown RBP14.26□□□□□ -0.13
CCDC88C-201ENST00000331194 ETS1P14921 441 aa14.26□□□□□ -0.13
CCDC88C-201ENST00000331194 HADHBP55084 474 aaKnown RBP14.26□□□□□ -0.13
CCDC88C-201ENST00000331194 PICALMQ13492 652 aa14.26□□□□□ -0.13
CCDC88C-201ENST00000331194 LRRC36Q1X8D7 754 aa14.26□□□□□ -0.13
CCDC88C-201ENST00000331194 RINT1Q6NUQ1 792 aa14.26□□□□□ -0.13
CCDC88C-201ENST00000331194 LRRC6Q86X45 466 aa14.26□□□□□ -0.13
CCDC88C-201ENST00000331194 NCAPG2Q86XI2 1143 aa14.26□□□□□ -0.13
CCDC88C-201ENST00000331194 SHKBP1Q8TBC3 707 aa14.26□□□□□ -0.13
CCDC88C-201ENST00000331194 ZNF184Q99676 751 aaPredicted RBP14.26□□□□□ -0.13
CCDC88C-201ENST00000331194 EMSYQ7Z589 1322 aa14.26□□□□□ -0.13
CCDC88C-201ENST00000331194 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.25□□□□□ -0.13
CCDC88C-201ENST00000331194 A6NJR5 290 aa14.25□□□□□ -0.13
CCDC88C-201ENST00000331194 FAM86B1E9PN63 330 aa14.25□□□□□ -0.13
CCDC88C-201ENST00000331194 CHMP2AO43633 222 aa14.25□□□□□ -0.13
CCDC88C-201ENST00000331194 FAM13AO94988 1023 aa14.25□□□□□ -0.13
CCDC88C-201ENST00000331194 GSTA2P09210 222 aa14.25□□□□□ -0.13
CCDC88C-201ENST00000331194 FAM86B2P0C5J1 330 aa14.25□□□□□ -0.13
CCDC88C-201ENST00000331194 PLS3P13797 630 aa14.25□□□□□ -0.13
CCDC88C-201ENST00000331194 CETN2P41208 172 aa14.25□□□□□ -0.13
CCDC88C-201ENST00000331194 PPP3CAQ08209 521 aa14.25□□□□□ -0.13
CCDC88C-201ENST00000331194 AP1B1Q10567 949 aa14.25□□□□□ -0.13
CCDC88C-201ENST00000331194 PTK6Q13882 451 aa14.25□□□□□ -0.13
CCDC88C-201ENST00000331194 SF3B3Q15393 1217 aaKnown RBP14.25□□□□□ -0.13
CCDC88C-201ENST00000331194 BMT2Q1RMZ1 405 aa14.25□□□□□ -0.13
CCDC88C-201ENST00000331194 SLC45A4Q5BKX6 768 aa14.25□□□□□ -0.13
CCDC88C-201ENST00000331194 PDCD7Q8N8D1 485 aaKnown RBP14.25□□□□□ -0.13
CCDC88C-201ENST00000331194 STMN2Q93045 179 aa14.25□□□□□ -0.13
CCDC88C-201ENST00000331194 SMC6Q96SB8 1091 aa14.25□□□□□ -0.13
CCDC88C-201ENST00000331194 ANO3Q9BYT9 981 aa14.25□□□□□ -0.13
CCDC88C-201ENST00000331194 DCLK3Q9C098 648 aa14.25□□□□□ -0.13
CCDC88C-201ENST00000331194 ATF5Q9Y2D1 282 aaPredicted RBP14.25□□□□□ -0.13
CCDC88C-201ENST00000331194 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP14.25□□□□□ -0.13
CCDC88C-201ENST00000331194 CCDC22O60826 627 aa14.25□□□□□ -0.13
CCDC88C-201ENST00000331194 KRT4P19013 534 aa14.25□□□□□ -0.13
CCDC88C-201ENST00000331194 RPA1P27694 616 aa14.25□□□□□ -0.13
CCDC88C-201ENST00000331194 TPP2P29144 1249 aaPredicted RBP14.25□□□□□ -0.13
CCDC88C-201ENST00000331194 NOP14P78316 857 aaKnown RBP14.25□□□□□ -0.13
CCDC88C-201ENST00000331194 STAT4Q14765 748 aa14.25□□□□□ -0.13
CCDC88C-201ENST00000331194 EFTUD2Q15029 972 aaKnown RBP eCLIP14.25□□□□□ -0.13
CCDC88C-201ENST00000331194 P3H1Q32P28 736 aa14.25□□□□□ -0.13
CCDC88C-201ENST00000331194 IZUMO2Q6UXV1 221 aa14.25□□□□□ -0.13
CCDC88C-201ENST00000331194 ANKS1BQ7Z6G8 1248 aa14.25□□□□□ -0.13
CCDC88C-201ENST00000331194 SLC25A41Q8N5S1 370 aa14.25□□□□□ -0.13
CCDC88C-201ENST00000331194 PTCD3Q96EY7 689 aaKnown RBP14.25□□□□□ -0.13
CCDC88C-201ENST00000331194 TTC1Q99614 292 aa14.25□□□□□ -0.13
CCDC88C-201ENST00000331194 DMAP1Q9NPF5 467 aaPredicted RBP14.25□□□□□ -0.13
CCDC88C-201ENST00000331194 ETNK2Q9NVF9 386 aa14.25□□□□□ -0.13
CCDC88C-201ENST00000331194 LNPEPQ9UIQ6 1025 aa14.25□□□□□ -0.13
CCDC88C-201ENST00000331194 FRMD4BQ9Y2L6 1034 aa14.25□□□□□ -0.13
CCDC88C-201ENST00000331194 C2CD2LO14523 706 aa14.24□□□□□ -0.13
CCDC88C-201ENST00000331194 BAG2O95816 211 aa14.24□□□□□ -0.13
CCDC88C-201ENST00000331194 MUTP22033 750 aa14.24□□□□□ -0.13
CCDC88C-201ENST00000331194 SMARCA1P28370 1054 aa14.24□□□□□ -0.13
CCDC88C-201ENST00000331194 NR1H3Q13133 447 aa14.24□□□□□ -0.13
CCDC88C-201ENST00000331194 FAM182AQ5T1J6 154 aa14.24□□□□□ -0.13
CCDC88C-201ENST00000331194 APLFQ8IW19 511 aaPredicted RBP14.24□□□□□ -0.13
CCDC88C-201ENST00000331194 PPFIBP2Q8ND30 876 aa14.24□□□□□ -0.13
CCDC88C-201ENST00000331194 EPS8L1Q8TE68 723 aa14.24□□□□□ -0.13
CCDC88C-201ENST00000331194 SPATA16Q9BXB7 569 aa14.24□□□□□ -0.13
CCDC88C-201ENST00000331194 RTFDC1Q9BY42 306 aaPredicted RBP14.24□□□□□ -0.13
CCDC88C-201ENST00000331194 VPS37BQ9H9H4 285 aa14.24□□□□□ -0.13
CCDC88C-201ENST00000331194 AGPAT3Q9NRZ7 376 aa14.24□□□□□ -0.13
CCDC88C-201ENST00000331194 RABGAP1Q9Y3P9 1069 aa14.24□□□□□ -0.13
CCDC88C-201ENST00000331194 MAST2Q6P0Q8 1798 aa14.24□□□□□ -0.13
CCDC88C-201ENST00000331194 HAUS5O94927 633 aa14.24□□□□□ -0.13
CCDC88C-201ENST00000331194 RALAP11233 206 aa14.24□□□□□ -0.13
CCDC88C-201ENST00000331194 BMP3P12645 472 aa14.24□□□□□ -0.13
CCDC88C-201ENST00000331194 ABCD1P33897 745 aa14.24□□□□□ -0.13
CCDC88C-201ENST00000331194 MTMR2Q13614 643 aa14.24□□□□□ -0.13
CCDC88C-201ENST00000331194 TPH2Q8IWU9 490 aa14.24□□□□□ -0.13
CCDC88C-201ENST00000331194 ETNPPLQ8TBG4 499 aa14.24□□□□□ -0.13
CCDC88C-201ENST00000331194 AZIN2Q96A70 460 aa14.24□□□□□ -0.13
CCDC88C-201ENST00000331194 OPTNQ96CV9 577 aa14.24□□□□□ -0.13
CCDC88C-201ENST00000331194 SYNCQ9H7C4 482 aa14.24□□□□□ -0.13
CCDC88C-201ENST00000331194 GOLGA8SH3BPF8 625 aa14.24□□□□□ -0.13
CCDC88C-201ENST00000331194 GOLGA8MH3BSY2 632 aa14.24□□□□□ -0.13
CCDC88C-201ENST00000331194 CREB3O43889 395 aa14.24□□□□□ -0.13
CCDC88C-201ENST00000331194 RNASEH1O60930 286 aaKnown RBP14.24□□□□□ -0.13
CCDC88C-201ENST00000331194 GAS8O95995 478 aa14.24□□□□□ -0.13
CCDC88C-201ENST00000331194 ZBTB16Q05516 673 aa14.24□□□□□ -0.13
CCDC88C-201ENST00000331194 ZNF543Q08ER8 600 aa14.24□□□□□ -0.13
CCDC88C-201ENST00000331194 ZNF365Q70YC5 407 aa14.24□□□□□ -0.13
CCDC88C-201ENST00000331194 GSTA5Q7RTV2 222 aa14.24□□□□□ -0.13
CCDC88C-201ENST00000331194 TAB3Q8N5C8 712 aaPredicted RBP14.24□□□□□ -0.13
CCDC88C-201ENST00000331194 FAM84AQ96KN4 292 aa14.24□□□□□ -0.13
CCDC88C-201ENST00000331194 FAM161BQ96MY7 647 aa14.24□□□□□ -0.13
CCDC88C-201ENST00000331194 FHDC1Q9C0D6 1143 aaPredicted RBP14.24□□□□□ -0.13
CCDC88C-201ENST00000331194 KLHL11Q9NVR0 708 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms