RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 CLEC4FQ8N1N0 589 aa18.22■□□□□ 0.51
SYNPO-201ENST00000307662 ZNF341Q9BYN7 854 aa18.22■□□□□ 0.51
SYNPO-201ENST00000307662 OLFML3Q9NRN5 406 aa18.22■□□□□ 0.51
SYNPO-201ENST00000307662 TOPORSQ9NS56 1045 aaPredicted RBP18.22■□□□□ 0.51
SYNPO-201ENST00000307662 PHTF1Q9UMS5 762 aa18.22■□□□□ 0.51
SYNPO-201ENST00000307662 CHMP2BQ9UQN3 213 aa18.22■□□□□ 0.51
SYNPO-201ENST00000307662 HUS1O60921 280 aa18.22■□□□□ 0.51
SYNPO-201ENST00000307662 PHKA2P46019 1235 aa18.22■□□□□ 0.51
SYNPO-201ENST00000307662 CPA2P48052 419 aa18.22■□□□□ 0.51
SYNPO-201ENST00000307662 EAPPQ56P03 285 aaPredicted RBP18.22■□□□□ 0.51
SYNPO-201ENST00000307662 PAPD7Q5XG87 772 aaKnown RBP18.22■□□□□ 0.51
SYNPO-201ENST00000307662 SNRNP27Q8WVK2 155 aaKnown RBP18.22■□□□□ 0.51
SYNPO-201ENST00000307662 BEGAINQ9BUH8 593 aa18.22■□□□□ 0.51
SYNPO-201ENST00000307662 RAB6BQ9NRW1 208 aa18.22■□□□□ 0.51
SYNPO-201ENST00000307662 HSPBP1Q9NZL4 362 aa18.22■□□□□ 0.51
SYNPO-201ENST00000307662 LMTK2Q8IWU2 1503 aa18.21■□□□□ 0.51
SYNPO-201ENST00000307662 E9PCH4 1651 aa18.21■□□□□ 0.51
SYNPO-201ENST00000307662 SLC26A4O43511 780 aa18.21■□□□□ 0.51
SYNPO-201ENST00000307662 CELF1Q92879 486 aaKnown RBP18.21■□□□□ 0.51
SYNPO-201ENST00000307662 CLMNQ96JQ2 1002 aa18.21■□□□□ 0.51
SYNPO-201ENST00000307662 KLF6Q99612 283 aaPredicted RBP18.21■□□□□ 0.51
SYNPO-201ENST00000307662 CD209Q9NNX6 404 aa18.21■□□□□ 0.51
SYNPO-201ENST00000307662 CDYLQ9Y232 598 aa18.21■□□□□ 0.51
SYNPO-201ENST00000307662 O00370 1275 aa18.21■□□□□ 0.51
SYNPO-201ENST00000307662 SYCP2LQ5T4T6 812 aa18.21■□□□□ 0.51
SYNPO-201ENST00000307662 RBM43Q6ZSC3 357 aaKnown RBP18.21■□□□□ 0.51
SYNPO-201ENST00000307662 PRUNE1Q86TP1 453 aa18.21■□□□□ 0.51
SYNPO-201ENST00000307662 OR6P1Q8NGX9 317 aa18.21■□□□□ 0.51
SYNPO-201ENST00000307662 MAGEB18Q96M61 343 aa18.21■□□□□ 0.51
SYNPO-201ENST00000307662 C2orf40Q9H1Z8 148 aa18.21■□□□□ 0.51
SYNPO-201ENST00000307662 CDH2P19022 906 aaPredicted RBP18.21■□□□□ 0.51
SYNPO-201ENST00000307662 MRPL4Q9BYD3 311 aaKnown RBP18.21■□□□□ 0.51
SYNPO-201ENST00000307662 SARS2Q9NP81 518 aaKnown RBP18.21■□□□□ 0.51
SYNPO-201ENST00000307662 GABBR1Q9UBS5 961 aa18.21■□□□□ 0.51
SYNPO-201ENST00000307662 TNS3Q68CZ2 1445 aa18.21■□□□□ 0.51
SYNPO-201ENST00000307662 PLEKHG2Q9H7P9 1386 aa18.21■□□□□ 0.51
SYNPO-201ENST00000307662 WDR47O94967 919 aa18.21■□□□□ 0.51
SYNPO-201ENST00000307662 DPY19L2Q6NUT2 758 aa18.21■□□□□ 0.51
SYNPO-201ENST00000307662 PCYOX1LQ8NBM8 494 aa18.21■□□□□ 0.51
SYNPO-201ENST00000307662 BEST2Q8NFU1 509 aa18.21■□□□□ 0.51
SYNPO-201ENST00000307662 NEDD1Q8NHV4 660 aa18.21■□□□□ 0.51
SYNPO-201ENST00000307662 DDI1Q8WTU0 396 aa18.21■□□□□ 0.51
SYNPO-201ENST00000307662 C10orf88Q9H8K7 445 aa18.21■□□□□ 0.51
SYNPO-201ENST00000307662 ZNF212Q9UDV6 495 aa18.21■□□□□ 0.51
SYNPO-201ENST00000307662 ATP6V1B1P15313 513 aa18.2■□□□□ 0.5
SYNPO-201ENST00000307662 GEMIN4P57678 1058 aaKnown RBP18.2■□□□□ 0.5
SYNPO-201ENST00000307662 EGFL8Q99944 293 aa18.2■□□□□ 0.5
SYNPO-201ENST00000307662 PLA2G12BQ9BX93 195 aa18.2■□□□□ 0.5
SYNPO-201ENST00000307662 CARD9Q9H257 536 aa18.2■□□□□ 0.5
SYNPO-201ENST00000307662 RAD17O75943 681 aa18.2■□□□□ 0.5
SYNPO-201ENST00000307662 PYGLP06737 847 aa18.2■□□□□ 0.5
SYNPO-201ENST00000307662 KCNJ1P48048 391 aa18.2■□□□□ 0.5
SYNPO-201ENST00000307662 SUPT20HL1Q3ZLR7 823 aa18.2■□□□□ 0.5
SYNPO-201ENST00000307662 TPCN2Q8NHX9 752 aa18.2■□□□□ 0.5
SYNPO-201ENST00000307662 REEP2Q9BRK0 252 aa18.2■□□□□ 0.5
SYNPO-201ENST00000307662 ZNF302Q9NR11 478 aa18.2■□□□□ 0.5
SYNPO-201ENST00000307662 NIPSNAP3AQ9UFN0 247 aaPredicted RBP18.2■□□□□ 0.5
SYNPO-201ENST00000307662 HAO1Q9UJM8 370 aa18.2■□□□□ 0.5
SYNPO-201ENST00000307662 DTNAQ9Y4J8 743 aa18.2■□□□□ 0.5
SYNPO-201ENST00000307662 ZNF335Q9H4Z2 1342 aaPredicted RBP18.2■□□□□ 0.5
SYNPO-201ENST00000307662 FNTAP49354 379 aa18.2■□□□□ 0.5
SYNPO-201ENST00000307662 ATXN3P54252 364 aaPredicted RBP18.2■□□□□ 0.5
SYNPO-201ENST00000307662 PIGHQ14442 188 aaPredicted RBP18.2■□□□□ 0.5
SYNPO-201ENST00000307662 STXBP2Q15833 593 aa18.2■□□□□ 0.5
SYNPO-201ENST00000307662 NUP93Q8N1F7 819 aa18.2■□□□□ 0.5
SYNPO-201ENST00000307662 ZNF507Q8TCN5 953 aa18.2■□□□□ 0.5
SYNPO-201ENST00000307662 MASTLQ96GX5 879 aa18.2■□□□□ 0.5
SYNPO-201ENST00000307662 ARHGEF40Q8TER5 1519 aa18.2■□□□□ 0.5
SYNPO-201ENST00000307662 MYO3BQ8WXR4 1341 aa18.2■□□□□ 0.5
SYNPO-201ENST00000307662 AP3B1O00203 1094 aa18.2■□□□□ 0.5
SYNPO-201ENST00000307662 ATP6V1G2O95670 118 aa18.2■□□□□ 0.5
SYNPO-201ENST00000307662 SERPINB1P30740 379 aa18.2■□□□□ 0.5
SYNPO-201ENST00000307662 COPAP53621 1224 aa18.2■□□□□ 0.5
SYNPO-201ENST00000307662 DEFA1P59665 94 aa18.2■□□□□ 0.5
SYNPO-201ENST00000307662 DEFA3P59666 94 aa18.2■□□□□ 0.5
SYNPO-201ENST00000307662 KLHDC7AQ5VTJ3 777 aa18.2■□□□□ 0.5
SYNPO-201ENST00000307662 FUCA2Q9BTY2 467 aa18.2■□□□□ 0.5
SYNPO-201ENST00000307662 FAM217BQ9NTX9 383 aaPredicted RBP18.2■□□□□ 0.5
SYNPO-201ENST00000307662 GRID1Q9ULK0 1009 aa18.2■□□□□ 0.5
SYNPO-201ENST00000307662 M0R3G1 203 aa18.19■□□□□ 0.5
SYNPO-201ENST00000307662 MYL2P10916 166 aa18.19■□□□□ 0.5
SYNPO-201ENST00000307662 CHI3L2Q15782 390 aa18.19■□□□□ 0.5
SYNPO-201ENST00000307662 DUOXA2Q1HG44 320 aa18.19■□□□□ 0.5
SYNPO-201ENST00000307662 C18orf8Q96DM3 657 aa18.19■□□□□ 0.5
SYNPO-201ENST00000307662 PRPF18Q99633 342 aaKnown RBP18.19■□□□□ 0.5
SYNPO-201ENST00000307662 ANKZF1Q9H8Y5 726 aa18.19■□□□□ 0.5
SYNPO-201ENST00000307662 MAD2L2Q9UI95 211 aa18.19■□□□□ 0.5
SYNPO-201ENST00000307662 CDY2AQ9Y6F7 541 aa18.19■□□□□ 0.5
SYNPO-201ENST00000307662 CDY1Q9Y6F8 540 aa18.19■□□□□ 0.5
SYNPO-201ENST00000307662 RSPH10B2B2RC85 870 aa18.19■□□□□ 0.5
SYNPO-201ENST00000307662 PDE5AO76074 875 aa18.19■□□□□ 0.5
SYNPO-201ENST00000307662 ASNSP08243 561 aa18.19■□□□□ 0.5
SYNPO-201ENST00000307662 RSPH10BP0C881 870 aa18.19■□□□□ 0.5
SYNPO-201ENST00000307662 ANTXR2P58335 489 aa18.19■□□□□ 0.5
SYNPO-201ENST00000307662 NME3Q13232 169 aa18.19■□□□□ 0.5
SYNPO-201ENST00000307662 WLSQ5T9L3 541 aa18.19■□□□□ 0.5
SYNPO-201ENST00000307662 SWSAP1Q6NVH7 229 aa18.19■□□□□ 0.5
SYNPO-201ENST00000307662 EPS8L3Q8TE67 593 aaKnown RBP18.19■□□□□ 0.5
SYNPO-201ENST00000307662 GOLPH3Q9H4A6 298 aa18.19■□□□□ 0.5
SYNPO-201ENST00000307662 PLAGL2Q9UPG8 496 aa18.19■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms