RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 RBBP8NLQ8NC74 664 aaPredicted RBP8.21□□□□□ -1.1
SCN9A-201ENST00000303354 DDX55Q8NHQ9 600 aaKnown RBP eCLIP8.21□□□□□ -1.1
SCN9A-201ENST00000303354 SGF29Q96ES7 293 aa8.21□□□□□ -1.1
SCN9A-201ENST00000303354 RPRD1AQ96P16 312 aaPredicted RBP8.21□□□□□ -1.1
SCN9A-201ENST00000303354 EPAS1Q99814 870 aa8.21□□□□□ -1.1
SCN9A-201ENST00000303354 FDXACB1Q9BRP7 624 aaPredicted RBP8.21□□□□□ -1.1
SCN9A-201ENST00000303354 MAD2L2Q9UI95 211 aa8.21□□□□□ -1.1
SCN9A-201ENST00000303354 JRKLQ9Y4A0 524 aa8.21□□□□□ -1.1
SCN9A-201ENST00000303354 AATKQ6ZMQ8 1374 aa8.21□□□□□ -1.1
SCN9A-201ENST00000303354 HSD17B4P51659 736 aa8.21□□□□□ -1.1
SCN9A-201ENST00000303354 KPNA2P52292 529 aaKnown RBP8.21□□□□□ -1.1
SCN9A-201ENST00000303354 PTGISQ16647 500 aa8.21□□□□□ -1.1
SCN9A-201ENST00000303354 AARS2Q5JTZ9 985 aaKnown RBP8.21□□□□□ -1.1
SCN9A-201ENST00000303354 LRRC8EQ6NSJ5 796 aa8.21□□□□□ -1.1
SCN9A-201ENST00000303354 ANKS3Q6ZW76 656 aa8.21□□□□□ -1.1
SCN9A-201ENST00000303354 TRIM54Q9BYV2 358 aa8.21□□□□□ -1.1
SCN9A-201ENST00000303354 UBP1Q9NZI7 540 aa8.21□□□□□ -1.1
SCN9A-201ENST00000303354 TDRKHQ9Y2W6 561 aaKnown RBP8.21□□□□□ -1.1
SCN9A-201ENST00000303354 CYB561D2O14569 222 aa8.21□□□□□ -1.1
SCN9A-201ENST00000303354 TYK2P29597 1187 aa8.21□□□□□ -1.1
SCN9A-201ENST00000303354 ARL4CP56559 192 aa8.21□□□□□ -1.1
SCN9A-201ENST00000303354 ETF1P62495 437 aaKnown RBP8.21□□□□□ -1.1
SCN9A-201ENST00000303354 GRAMD1BQ3KR37 738 aa8.21□□□□□ -1.1
SCN9A-201ENST00000303354 MYRIPQ8NFW9 859 aa8.21□□□□□ -1.1
SCN9A-201ENST00000303354 SPZ1Q9BXG8 430 aa8.21□□□□□ -1.1
SCN9A-201ENST00000303354 TMEM60Q9H2L4 133 aa8.21□□□□□ -1.1
SCN9A-201ENST00000303354 VCX3AQ9NNX9 186 aa8.21□□□□□ -1.1
SCN9A-201ENST00000303354 WTIPA6NIX2 430 aaPredicted RBP8.2□□□□□ -1.1
SCN9A-201ENST00000303354 MTF1Q14872 753 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 C18orf8Q96DM3 657 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 C20orf96Q9NUD7 363 aaPredicted RBP8.2□□□□□ -1.1
SCN9A-201ENST00000303354 PPP1R9AQ9ULJ8 1098 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 NFIBO00712 420 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 MAFGO15525 162 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 PEX10O60683 326 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 SUN1O94901 812 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 EYA4O95677 639 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 CALB1P05937 261 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 CUL1Q13616 776 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 ALCAMQ13740 583 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 ANKRD20A4Q4UJ75 823 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 ANKRD20A8PQ5CZ79 823 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 ANKRD20A2Q5SQ80 823 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 ANKRD20A1Q5TYW2 823 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 GPAT2Q6NUI2 795 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 C3orf67Q6ZVT6 689 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 EDEM1Q92611 657 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 JADE3Q92613 823 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 FBXO32Q969P5 355 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 HPDLQ96IR7 371 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP8.2□□□□□ -1.1
SCN9A-201ENST00000303354 ALDH2P05091 517 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 HIST1H2AGP0C0S8 130 aaPredicted RBP8.2□□□□□ -1.1
SCN9A-201ENST00000303354 HIST1H2ADP20671 130 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 TBXAS1P24557 533 aaPredicted RBP8.2□□□□□ -1.1
SCN9A-201ENST00000303354 CDC16Q13042 620 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 KCNT1Q5JUK3 1230 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 HIST1H2AHQ96KK5 128 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 HIST1H2AJQ99878 128 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 APOL2Q9BQE5 337 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 H2AFJQ9BTM1 129 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 WDCPQ9H6R7 721 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 RCOR1Q9UKL0 485 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 TAF6LQ9Y6J9 622 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 TRDMT1O14717 391 aaKnown RBP8.2□□□□□ -1.1
SCN9A-201ENST00000303354 URODP06132 367 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 SLC9A1P19634 815 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 ALDH18A1P54886 795 aaKnown RBP8.2□□□□□ -1.1
SCN9A-201ENST00000303354 SNRNP35Q16560 246 aaKnown RBP8.2□□□□□ -1.1
SCN9A-201ENST00000303354 SHC4Q6S5L8 630 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 EPM2AIP1Q7L775 607 aaPredicted RBP8.2□□□□□ -1.1
SCN9A-201ENST00000303354 TADA2BQ86TJ2 420 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 CCDC197Q8NCU1 140 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 ST13P5Q8NFI4 369 aaPredicted RBP8.2□□□□□ -1.1
SCN9A-201ENST00000303354 COPS5Q92905 334 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 FAM81BQ96LP2 452 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 TMEM161AQ9NX61 479 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 CEP72Q9P209 647 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 NT5C1B-RDH14C9J2C7 533 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 ALFQ53S48 1182 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 IQCDQ96DY2 449 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 PARD6BQ9BYG5 372 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 RERGLQ9H628 205 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 EPB41L4AQ9HCS5 686 aaPredicted RBP8.2□□□□□ -1.1
SCN9A-201ENST00000303354 ABHD10Q9NUJ1 306 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 SEL1LQ9UBV2 794 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 MARCOQ9UEW3 520 aaPredicted RBP8.2□□□□□ -1.1
SCN9A-201ENST00000303354 GTF2A1LQ9UNN4 478 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 SHANK2Q9UPX8 1470 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 MYO1GB0I1T2 1018 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 SYNCRIPO60506 623 aaKnown RBP8.2□□□□□ -1.1
SCN9A-201ENST00000303354 ABCD1P33897 745 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 ZSCAN26Q16670 478 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 KLHL29Q96CT2 875 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 XPNPEP3Q9NQH7 507 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 A0A1W2PQ27 194 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 A0A1W2PQ64 194 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 A0A1W2PQD8 194 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 GPR182O15218 404 aa8.2□□□□□ -1.1
SCN9A-201ENST00000303354 AP1G2O75843 785 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms