RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 PIGOQ8TEQ8 1089 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 PHF21AQ96BD5 680 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 UNC45AQ9H3U1 944 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 PRDM16Q9HAZ2 1276 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 A0A087X0B3 334 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 SERPINB2P05120 415 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 LRPAP1P30533 357 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 GARSP41250 739 aaKnown RBP6.74□□□□□ -1.33
VPS35-201ENST00000299138 AP2B1P63010 937 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 INAQ16352 499 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 TLDC1Q6P9B6 456 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 ALDH16A1Q8IZ83 802 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 GIPC2Q8TF65 315 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 QKIQ96PU8 341 aaKnown RBP eCLIP6.74□□□□□ -1.336e-6■■■■□ 20.5
VPS35-201ENST00000299138 EYA3Q99504 573 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 GANQ9H2C0 597 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 SYBUQ9NX95 663 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 SLC13A4Q9UKG4 626 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 COMMD3-BMI1R4GMX3 469 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 MAGEB2O15479 319 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 TOMM70O94826 608 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 ATP2B4P23634 1241 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 PLTPP55058 493 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 TRMT5Q32P41 509 aaKnown RBP6.74□□□□□ -1.33
VPS35-201ENST00000299138 LRRC38Q5VT99 294 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 SHQ1Q6PI26 577 aaKnown RBP6.74□□□□□ -1.33
VPS35-201ENST00000299138 NT5DC3Q86UY8 548 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 FAM133AQ8N9E0 248 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 STKLD1Q8NE28 680 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 PIGBQ92521 554 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 AMNQ9BXJ7 453 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 MAP10Q9P2G4 905 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 PRG3Q9Y2Y8 225 aaPredicted RBP6.74□□□□□ -1.33
VPS35-201ENST00000299138 FAM95CA0A1B0GW59 222 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 GOLGA8TH3BQL2 631 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 TM9SF1O15321 606 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 TGDSO95455 350 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 YWHAGP61981 247 aaKnown RBP eCLIP6.74□□□□□ -1.33
VPS35-201ENST00000299138 KIF19Q2TAC6 998 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 AAGABQ6PD74 315 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 ANO5Q75V66 913 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 STX12Q86Y82 276 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 TTC39CQ8N584 583 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 TMEM47Q9BQJ4 181 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 SEMA6BQ9H3T3 888 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 DNAJC17Q9NVM6 304 aaKnown RBP6.74□□□□□ -1.33
VPS35-201ENST00000299138 MBD2Q9UBB5 411 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 ZNF212Q9UDV6 495 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 USP21Q9UK80 565 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 TMCO1Q9UM00 188 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 IPPQ9Y573 584 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 FLT1P17948 1338 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 CFAP69A5D8W1 941 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 H0YGN5 161 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 RFC4P35249 363 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 FBXW4P57775 412 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 PDE1BQ01064 536 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 GFPT1Q06210 699 aaPredicted RBP6.74□□□□□ -1.33
VPS35-201ENST00000299138 GRB10Q13322 594 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 KRT72Q14CN4 511 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 NELFCDQ8IXH7 590 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 FNBP1Q96RU3 617 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 BBS2Q9BXC9 721 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 ECT2Q9H8V3 914 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 NFS1Q9Y697 457 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 MROH7Q68CQ1 1323 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 CYP3A7-CYP3A51PA0A087WV96 503 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 ABCB4P21439 1286 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 CYP3A7P24462 503 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 CCT3P49368 545 aaKnown RBP6.73□□□□□ -1.33
VPS35-201ENST00000299138 DMC1Q14565 340 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 LRRC36Q1X8D7 754 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 C11orf91Q3C1V1 193 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 GALNT15Q8N3T1 639 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 ENDOVQ8N8Q3 282 aaKnown RBP6.73□□□□□ -1.33
VPS35-201ENST00000299138 SYT2Q8N9I0 419 aaPredicted RBP6.73□□□□□ -1.33
VPS35-201ENST00000299138 STAMQ92783 540 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 MCRS1Q96EZ8 462 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 DDX47Q9H0S4 455 aaKnown RBP6.73□□□□□ -1.33
VPS35-201ENST00000299138 ETNK1Q9HBU6 452 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 SHOC2Q9UQ13 582 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 EFR3BQ9Y2G0 817 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 TCHHQ07283 1943 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 LRP5O75197 1615 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 POTECB2RU33 542 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 TAF4O00268 1085 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 CCNB1P14635 433 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 BRAFP15056 766 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 SEC24CP53992 1094 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 NDUFA5Q16718 116 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 ADGRG6Q86SQ4 1221 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 SLC13A5Q86YT5 568 aaPredicted RBP6.73□□□□□ -1.33
VPS35-201ENST00000299138 METTL13Q8N6R0 699 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 ART4Q93070 314 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 C17orf75Q9HAS0 396 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 TMEM165Q9HC07 324 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 DMAP1Q9NPF5 467 aaPredicted RBP6.73□□□□□ -1.33
VPS35-201ENST00000299138 PARVAQ9NVD7 372 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 GCNT4Q9P109 453 aa6.73□□□□□ -1.33
VPS35-201ENST00000299138 ADAMTSL3P82987 1691 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms