RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 PSMC4P43686 418 aa14.29□□□□□ -0.12
SKA3-201ENST00000298260 TTLL12Q14166 644 aaPredicted RBP14.29□□□□□ -0.12
SKA3-201ENST00000298260 P3H1Q32P28 736 aa14.29□□□□□ -0.12
SKA3-201ENST00000298260 PRR16Q569H4 304 aa14.29□□□□□ -0.12
SKA3-201ENST00000298260 IZUMO3Q5VZ72 239 aa14.29□□□□□ -0.12
SKA3-201ENST00000298260 PCNX4Q63HM2 1172 aa14.29□□□□□ -0.12
SKA3-201ENST00000298260 FBXO33Q7Z6M2 555 aa14.29□□□□□ -0.12
SKA3-201ENST00000298260 MYLK4Q86YV6 388 aaPredicted RBP14.29□□□□□ -0.12
SKA3-201ENST00000298260 PTCD3Q96EY7 689 aaKnown RBP14.29□□□□□ -0.12
SKA3-201ENST00000298260 SMC6Q96SB8 1091 aa14.29□□□□□ -0.12
SKA3-201ENST00000298260 LZTS2Q9BRK4 669 aa14.29□□□□□ -0.12
SKA3-201ENST00000298260 SYNCQ9H7C4 482 aa14.29□□□□□ -0.12
SKA3-201ENST00000298260 VPS37BQ9H9H4 285 aa14.29□□□□□ -0.12
SKA3-201ENST00000298260 LRRC4BQ9NT99 713 aa14.29□□□□□ -0.12
SKA3-201ENST00000298260 SLC17A7Q9P2U7 560 aa14.29□□□□□ -0.12
SKA3-201ENST00000298260 STX18Q9P2W9 335 aaKnown RBP14.29□□□□□ -0.12
SKA3-201ENST00000298260 PPM1HQ9ULR3 514 aa14.29□□□□□ -0.12
SKA3-201ENST00000298260 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP14.28□□□□□ -0.12
SKA3-201ENST00000298260 PLS3P13797 630 aa14.28□□□□□ -0.12
SKA3-201ENST00000298260 KRT4P19013 534 aa14.28□□□□□ -0.12
SKA3-201ENST00000298260 IL6STP40189 918 aaPredicted RBP14.28□□□□□ -0.12
SKA3-201ENST00000298260 NOP14P78316 857 aaKnown RBP14.28□□□□□ -0.12
SKA3-201ENST00000298260 SLC45A4Q5BKX6 768 aa14.28□□□□□ -0.12
SKA3-201ENST00000298260 ZNF804AQ7Z570 1209 aa14.28□□□□□ -0.12
SKA3-201ENST00000298260 NOP9Q86U38 636 aaKnown RBP14.28□□□□□ -0.12
SKA3-201ENST00000298260 SLC47A2Q86VL8 602 aa14.28□□□□□ -0.12
SKA3-201ENST00000298260 ABTB1Q969K4 478 aaPredicted RBP14.28□□□□□ -0.12
SKA3-201ENST00000298260 ZNF653Q96CK0 615 aa14.28□□□□□ -0.12
SKA3-201ENST00000298260 FAM84AQ96KN4 292 aa14.28□□□□□ -0.12
SKA3-201ENST00000298260 KLHL11Q9NVR0 708 aa14.28□□□□□ -0.12
SKA3-201ENST00000298260 PDP2Q9P2J9 529 aa14.28□□□□□ -0.12
SKA3-201ENST00000298260 HSFX1Q9UBD0 423 aa14.28□□□□□ -0.12
SKA3-201ENST00000298260 ZMYM2Q9UBW7 1377 aa14.28□□□□□ -0.12
SKA3-201ENST00000298260 ERVV-1B6SEH8 477 aa14.28□□□□□ -0.12
SKA3-201ENST00000298260 MAGEB2O15479 319 aa14.28□□□□□ -0.12
SKA3-201ENST00000298260 SPATA31C1P0DKV0 1188 aa14.28□□□□□ -0.12
SKA3-201ENST00000298260 HARSP12081 509 aaKnown RBP14.28□□□□□ -0.12
SKA3-201ENST00000298260 PGM1P36871 562 aa14.28□□□□□ -0.12
SKA3-201ENST00000298260 RAPH1Q70E73 1250 aa14.28□□□□□ -0.12
SKA3-201ENST00000298260 KCTD1Q719H9 257 aa14.28□□□□□ -0.12
SKA3-201ENST00000298260 ALYREFQ86V81 257 aaKnown RBP14.28□□□□□ -0.12
SKA3-201ENST00000298260 ANKMY2Q8IV38 441 aa14.28□□□□□ -0.12
SKA3-201ENST00000298260 APLFQ8IW19 511 aaPredicted RBP14.28□□□□□ -0.12
SKA3-201ENST00000298260 CYP2W1Q8TAV3 490 aa14.28□□□□□ -0.12
SKA3-201ENST00000298260 HIC2Q96JB3 615 aa14.28□□□□□ -0.12
SKA3-201ENST00000298260 FNBP1Q96RU3 617 aa14.28□□□□□ -0.12
SKA3-201ENST00000298260 METTL14Q9HCE5 456 aaKnown RBP14.28□□□□□ -0.12
SKA3-201ENST00000298260 CYLDQ9NQC7 956 aa14.28□□□□□ -0.12
SKA3-201ENST00000298260 TRPC5Q9UL62 973 aaPredicted RBP14.28□□□□□ -0.12
SKA3-201ENST00000298260 FRMPD4Q14CM0 1322 aa14.28□□□□□ -0.12
SKA3-201ENST00000298260 USP17L10C9JJH3 530 aa14.28□□□□□ -0.12
SKA3-201ENST00000298260 H3BRJ5 948 aa14.28□□□□□ -0.12
SKA3-201ENST00000298260 C2CD2LO14523 706 aa14.28□□□□□ -0.12
SKA3-201ENST00000298260 GNPATO15228 680 aa14.28□□□□□ -0.12
SKA3-201ENST00000298260 MAGEB3O15480 346 aa14.28□□□□□ -0.12
SKA3-201ENST00000298260 CYP26A1O43174 497 aa14.28□□□□□ -0.12
SKA3-201ENST00000298260 COQ9O75208 318 aa14.28□□□□□ -0.12
SKA3-201ENST00000298260 FUT4P22083 530 aa14.28□□□□□ -0.12
SKA3-201ENST00000298260 RPL13P26373 211 aaKnown RBP14.28□□□□□ -0.12
SKA3-201ENST00000298260 ANXA13P27216 316 aa14.28□□□□□ -0.12
SKA3-201ENST00000298260 MYL7Q01449 175 aa14.28□□□□□ -0.12
SKA3-201ENST00000298260 ANKS1BQ7Z6G8 1248 aa14.28□□□□□ -0.12
SKA3-201ENST00000298260 MYCT1Q8N699 235 aa14.28□□□□□ -0.12
SKA3-201ENST00000298260 PSPC1Q8WXF1 523 aaKnown RBP14.28□□□□□ -0.12
SKA3-201ENST00000298260 JDP2Q8WYK2 163 aa14.28□□□□□ -0.12
SKA3-201ENST00000298260 MPP4Q96JB8 637 aa14.28□□□□□ -0.12
SKA3-201ENST00000298260 AGBL1Q96MI9 1066 aa14.28□□□□□ -0.12
SKA3-201ENST00000298260 RIOX1Q9H6W3 641 aa14.28□□□□□ -0.12
SKA3-201ENST00000298260 JMJD4Q9H9V9 463 aa14.28□□□□□ -0.12
SKA3-201ENST00000298260 DDX18Q9NVP1 670 aaKnown RBP14.28□□□□□ -0.12
SKA3-201ENST00000298260 CCNL1Q9UK58 526 aaPredicted RBP14.28□□□□□ -0.12
SKA3-201ENST00000298260 KDM3AQ9Y4C1 1321 aa14.28□□□□□ -0.12
SKA3-201ENST00000298260 ESRRAP11474 423 aaPredicted RBP14.27□□□□□ -0.12
SKA3-201ENST00000298260 MUTP22033 750 aa14.27□□□□□ -0.12
SKA3-201ENST00000298260 PSMC2P35998 433 aaKnown RBP14.27□□□□□ -0.12
SKA3-201ENST00000298260 GCLMP48507 274 aa14.27□□□□□ -0.12
SKA3-201ENST00000298260 ZYXQ15942 572 aaKnown RBP14.27□□□□□ -0.12
SKA3-201ENST00000298260 LARP7Q4G0J3 582 aaKnown RBP eCLIP14.27□□□□□ -0.12
SKA3-201ENST00000298260 ADGRF4Q8IZF3 695 aa14.27□□□□□ -0.12
SKA3-201ENST00000298260 P2RX7Q99572 595 aaKnown RBP14.27□□□□□ -0.12
SKA3-201ENST00000298260 TRAIPQ9BWF2 469 aa14.27□□□□□ -0.12
SKA3-201ENST00000298260 WNT8AQ9H1J5 351 aa14.27□□□□□ -0.12
SKA3-201ENST00000298260 DNM3Q9UQ16 869 aa14.27□□□□□ -0.12
SKA3-201ENST00000298260 PAPPAQ13219 1627 aa14.27□□□□□ -0.13
SKA3-201ENST00000298260 SSTR3P32745 418 aaPredicted RBP14.27□□□□□ -0.13
SKA3-201ENST00000298260 GAD2Q05329 585 aa14.27□□□□□ -0.13
SKA3-201ENST00000298260 LSAMPQ13449 338 aa14.27□□□□□ -0.13
SKA3-201ENST00000298260 C1QTNF12Q5T7M4 302 aa14.27□□□□□ -0.13
SKA3-201ENST00000298260 CEP128Q6ZU80 1094 aa14.27□□□□□ -0.13
SKA3-201ENST00000298260 SPATA24Q86W54 205 aa14.27□□□□□ -0.13
SKA3-201ENST00000298260 CFAP61Q8NHU2 1237 aa14.27□□□□□ -0.13
SKA3-201ENST00000298260 NSL1Q96IY1 281 aa14.27□□□□□ -0.13
SKA3-201ENST00000298260 CCDC77Q9BR77 488 aa14.27□□□□□ -0.13
SKA3-201ENST00000298260 FHDC1Q9C0D6 1143 aaPredicted RBP14.27□□□□□ -0.13
SKA3-201ENST00000298260 VCX3BQ9H321 246 aa14.27□□□□□ -0.13
SKA3-201ENST00000298260 PSTPIP2Q9H939 334 aa14.27□□□□□ -0.13
SKA3-201ENST00000298260 VCX3AQ9NNX9 186 aa14.27□□□□□ -0.13
SKA3-201ENST00000298260 LAMB1P07942 1786 aa14.26□□□□□ -0.13
SKA3-201ENST00000298260 SNED1Q8TER0 1413 aa14.26□□□□□ -0.13
SKA3-201ENST00000298260 KAT6AQ92794 2004 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms