RNA–Protein interactions for RNA: ENST00000264828.3

COL5A3-201, Transcript of collagen type V alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL5A3, Length 6,174 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3-201ENST00000264828 SYDE1Q6ZW31 735 aaPredicted RBP18.88■□□□□ 0.61
COL5A3-201ENST00000264828 AGGF1Q8N302 714 aaeCLIP18.88■□□□□ 0.61
COL5A3-201ENST00000264828 ARHGEF40Q8TER5 1519 aa18.88■□□□□ 0.61
COL5A3-201ENST00000264828 ADRA2BP18089 450 aa18.88■□□□□ 0.61
COL5A3-201ENST00000264828 CPA2P48052 419 aa18.88■□□□□ 0.61
COL5A3-201ENST00000264828 CDK17Q00537 523 aa18.88■□□□□ 0.61
COL5A3-201ENST00000264828 ORC2Q13416 577 aaPredicted RBP18.88■□□□□ 0.61
COL5A3-201ENST00000264828 C16orf89Q6UX73 402 aa18.88■□□□□ 0.61
COL5A3-201ENST00000264828 BTN2A2Q8WVV5 523 aa18.88■□□□□ 0.61
COL5A3-201ENST00000264828 FAM162AQ96A26 154 aa18.88■□□□□ 0.61
COL5A3-201ENST00000264828 OTUB1Q96FW1 271 aaPredicted RBP18.88■□□□□ 0.61
COL5A3-201ENST00000264828 APEX2Q9UBZ4 518 aa18.88■□□□□ 0.61
COL5A3-201ENST00000264828 A0A1B0GTH6 734 aa18.88■□□□□ 0.61
COL5A3-201ENST00000264828 HSPA1AP0DMV8 641 aaKnown RBP18.88■□□□□ 0.61
COL5A3-201ENST00000264828 HSPA1BP0DMV9 641 aaKnown RBP18.88■□□□□ 0.61
COL5A3-201ENST00000264828 CYP2C19P33261 490 aa18.88■□□□□ 0.61
COL5A3-201ENST00000264828 ZNF200P98182 395 aaPredicted RBP18.88■□□□□ 0.61
COL5A3-201ENST00000264828 KLC1Q07866 573 aa18.88■□□□□ 0.61
COL5A3-201ENST00000264828 PCSK7Q16549 785 aa18.88■□□□□ 0.61
COL5A3-201ENST00000264828 SENP7Q9BQF6 1050 aa18.88■□□□□ 0.61
COL5A3-201ENST00000264828 CELF4Q9BZC1 486 aaKnown RBP18.88■□□□□ 0.61
COL5A3-201ENST00000264828 ARHGEF38Q9NXL2 777 aa18.88■□□□□ 0.61
COL5A3-201ENST00000264828 KCNQ2O43526 872 aa18.88■□□□□ 0.61
COL5A3-201ENST00000264828 CCNI2Q6ZMN8 369 aaPredicted RBP18.88■□□□□ 0.61
COL5A3-201ENST00000264828 C2orf69Q8N8R5 385 aa18.88■□□□□ 0.61
COL5A3-201ENST00000264828 FBXO40Q9UH90 709 aa18.88■□□□□ 0.61
COL5A3-201ENST00000264828 CDYLQ9Y232 598 aa18.88■□□□□ 0.61
COL5A3-201ENST00000264828 SERPINB4P48594 390 aa18.88■□□□□ 0.61
COL5A3-201ENST00000264828 PLOD1Q02809 727 aaPredicted RBP18.88■□□□□ 0.61
COL5A3-201ENST00000264828 PKN3Q6P5Z2 889 aa18.88■□□□□ 0.61
COL5A3-201ENST00000264828 TRPM8Q7Z2W7 1104 aa18.88■□□□□ 0.61
COL5A3-201ENST00000264828 PRPF39Q86UA1 669 aaKnown RBP18.88■□□□□ 0.61
COL5A3-201ENST00000264828 RNF149Q8NC42 400 aa18.88■□□□□ 0.61
COL5A3-201ENST00000264828 SETD1BQ9UPS6 1966 aaKnown RBP18.87■□□□□ 0.61
COL5A3-201ENST00000264828 EYA4O95677 639 aa18.87■□□□□ 0.61
COL5A3-201ENST00000264828 HMBSP08397 361 aa18.87■□□□□ 0.61
COL5A3-201ENST00000264828 MYL2P10916 166 aa18.87■□□□□ 0.61
COL5A3-201ENST00000264828 ABCE1P61221 599 aaKnown RBP18.87■□□□□ 0.61
COL5A3-201ENST00000264828 TRIP10Q15642 601 aa18.87■□□□□ 0.61
COL5A3-201ENST00000264828 C11orf74Q86VG3 221 aa18.87■□□□□ 0.61
COL5A3-201ENST00000264828 C17orf80Q9BSJ5 609 aa18.87■□□□□ 0.61
COL5A3-201ENST00000264828 GPBP1L1Q9HC44 474 aaPredicted RBP18.87■□□□□ 0.61
COL5A3-201ENST00000264828 TJP2Q9UDY2 1190 aa18.87■□□□□ 0.61
COL5A3-201ENST00000264828 FAM47DPA6NHR8 397 aa18.87■□□□□ 0.61
COL5A3-201ENST00000264828 C5orf58C9J3I9 102 aa18.87■□□□□ 0.61
COL5A3-201ENST00000264828 KIF1CO43896 1103 aaKnown RBP18.87■□□□□ 0.61
COL5A3-201ENST00000264828 MYBP10242 640 aa18.87■□□□□ 0.61
COL5A3-201ENST00000264828 KCNB1Q14721 858 aa18.87■□□□□ 0.61
COL5A3-201ENST00000264828 MYO3AQ8NEV4 1616 aa18.87■□□□□ 0.61
COL5A3-201ENST00000264828 GRAP2O75791 330 aa18.87■□□□□ 0.61
COL5A3-201ENST00000264828 S100A5P33763 92 aa18.87■□□□□ 0.61
COL5A3-201ENST00000264828 WDR72Q3MJ13 1102 aa18.87■□□□□ 0.61
COL5A3-201ENST00000264828 ELMSAN1Q6PJG2 1045 aa18.87■□□□□ 0.61
COL5A3-201ENST00000264828 CLCA2Q9UQC9 943 aa18.87■□□□□ 0.61
COL5A3-201ENST00000264828 SUPT3HB4E1H0 165 aa18.87■□□□□ 0.61
COL5A3-201ENST00000264828 FXR1P51114 621 aaKnown RBP eCLIP18.87■□□□□ 0.61
COL5A3-201ENST00000264828 LVRNQ6Q4G3 990 aa18.87■□□□□ 0.61
COL5A3-201ENST00000264828 LAYNQ6UX15 382 aa18.87■□□□□ 0.61
COL5A3-201ENST00000264828 ASAP3Q8TDY4 903 aa18.87■□□□□ 0.61
COL5A3-201ENST00000264828 USP6NLQ92738 828 aa18.87■□□□□ 0.61
COL5A3-201ENST00000264828 PTPRN2Q92932 1015 aa18.87■□□□□ 0.61
COL5A3-201ENST00000264828 C18orf8Q96DM3 657 aa18.87■□□□□ 0.61
COL5A3-201ENST00000264828 DCUN1D1Q96GG9 259 aa18.87■□□□□ 0.61
COL5A3-201ENST00000264828 ZIM3Q96PE6 472 aa18.87■□□□□ 0.61
COL5A3-201ENST00000264828 PPP3CCP48454 512 aa18.87■□□□□ 0.61
COL5A3-201ENST00000264828 STOX1Q6ZVD7 989 aa18.87■□□□□ 0.61
COL5A3-201ENST00000264828 PLEKHM3Q6ZWE6 761 aa18.87■□□□□ 0.61
COL5A3-201ENST00000264828 DDX42Q86XP3 938 aaKnown RBP eCLIP18.87■□□□□ 0.61
COL5A3-201ENST00000264828 SLC16A3O15427 465 aaKnown RBP18.86■□□□□ 0.61
COL5A3-201ENST00000264828 PRKCBP05771 671 aa18.86■□□□□ 0.61
COL5A3-201ENST00000264828 AKR1B1P15121 316 aa18.86■□□□□ 0.61
COL5A3-201ENST00000264828 HSD17B4P51659 736 aa18.86■□□□□ 0.61
COL5A3-201ENST00000264828 SPP2Q13103 211 aa18.86■□□□□ 0.61
COL5A3-201ENST00000264828 SYTL3Q4VX76 610 aa18.86■□□□□ 0.61
COL5A3-201ENST00000264828 RBM46Q8TBY0 533 aaKnown RBP18.86■□□□□ 0.61
COL5A3-201ENST00000264828 GJD4Q96KN9 370 aaPredicted RBP18.86■□□□□ 0.61
COL5A3-201ENST00000264828 ZNF197O14709 1029 aa18.86■□□□□ 0.61
COL5A3-201ENST00000264828 SRGNP10124 158 aa18.86■□□□□ 0.61
COL5A3-201ENST00000264828 LSP1P33241 339 aa18.86■□□□□ 0.61
COL5A3-201ENST00000264828 DPYDQ12882 1025 aa18.86■□□□□ 0.61
COL5A3-201ENST00000264828 LRRC8BQ6P9F7 803 aa18.86■□□□□ 0.61
COL5A3-201ENST00000264828 RASGRP2Q7LDG7 609 aa18.86■□□□□ 0.61
COL5A3-201ENST00000264828 DNAJC9Q8WXX5 260 aa18.86■□□□□ 0.61
COL5A3-201ENST00000264828 ARHGEF26Q96DR7 871 aa18.86■□□□□ 0.61
COL5A3-201ENST00000264828 TRPC7Q9HCX4 862 aa18.86■□□□□ 0.61
COL5A3-201ENST00000264828 FARP1Q9Y4F1 1045 aaPredicted RBP18.86■□□□□ 0.61
COL5A3-201ENST00000264828 TMEM120BA0PK00 339 aa18.86■□□□□ 0.61
COL5A3-201ENST00000264828 C3orf70A6NLC5 250 aaPredicted RBP18.86■□□□□ 0.61
COL5A3-201ENST00000264828 PRR23D1E9PI22 279 aaPredicted RBP18.86■□□□□ 0.61
COL5A3-201ENST00000264828 POLRMTO00411 1230 aaKnown RBP18.86■□□□□ 0.61
COL5A3-201ENST00000264828 PDXKO00764 312 aa18.86■□□□□ 0.61
COL5A3-201ENST00000264828 FKBP9O95302 570 aa18.86■□□□□ 0.61
COL5A3-201ENST00000264828 PRR23D2P0DMB1 279 aaPredicted RBP18.86■□□□□ 0.61
COL5A3-201ENST00000264828 RALAP11233 206 aa18.86■□□□□ 0.61
COL5A3-201ENST00000264828 ITIH2P19823 946 aa18.86■□□□□ 0.61
COL5A3-201ENST00000264828 FKBP9P1Q75LS8 142 aa18.86■□□□□ 0.61
COL5A3-201ENST00000264828 STK33Q9BYT3 514 aa18.86■□□□□ 0.61
COL5A3-201ENST00000264828 RCAN1P53805 252 aa18.86■□□□□ 0.61
COL5A3-201ENST00000264828 SF3B3Q15393 1217 aaKnown RBP18.86■□□□□ 0.61
COL5A3-201ENST00000264828 SLC25A41Q8N5S1 370 aa18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms