RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 APOBEC3FQ8IUX4 373 aaKnown RBP6.36□□□□□ -1.39
VPS13D-201ENST00000011700 TGFBRAP1Q8WUH2 860 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 AGBL1Q96MI9 1066 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 PCDHA5Q9Y5H7 936 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 PIKFYVEQ9Y2I7 2098 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 FER1L4A9Z1Z3 1794 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 F8W031 263 aaPredicted RBP6.36□□□□□ -1.39
VPS13D-201ENST00000011700 ABLIM1O14639 778 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 PLA2G4BP0C869 781 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 PRLRP16471 622 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 PPP2R1BP30154 601 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 PGM1P36871 562 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 BCAR1P56945 870 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 RAB25P57735 213 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 CD302Q8IX05 232 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 CYP4Z2PQ8N1L4 340 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 STN1Q9H668 368 aaKnown RBP6.36□□□□□ -1.39
VPS13D-201ENST00000011700 BAZ2AQ9UIF9 1905 aaKnown RBP6.36□□□□□ -1.39
VPS13D-201ENST00000011700 GSAPA4D1B5 854 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 CES2O00748 559 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 DNAJC6O75061 913 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 RAP1GAPP47736 663 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 CCNG2Q16589 344 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 TMEM259Q4ZIN3 620 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 GJD3Q8N144 294 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 TCEANC2Q96MN5 208 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 UBE2OQ9C0C9 1292 aaKnown RBP6.36□□□□□ -1.39
VPS13D-201ENST00000011700 RMND5AQ9H871 391 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 AIPL1Q9NZN9 384 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 PAK5Q9P286 719 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 MAD2L2Q9UI95 211 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 MADDQ8WXG6 1647 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 CCDC189A1A4V9 331 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 ZBTB5O15062 677 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 GTF2H1P32780 548 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 TSNQ15631 228 aaKnown RBP6.36□□□□□ -1.39
VPS13D-201ENST00000011700 SLFN13Q68D06 897 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 FAM92BQ6ZTR7 304 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 DPP10Q8N608 796 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 YIPF3Q9GZM5 350 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 CNGB3Q9NQW8 809 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 SH3BP4Q9P0V3 963 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 KPNA4O00629 521 aaPredicted RBP6.36□□□□□ -1.39
VPS13D-201ENST00000011700 PCSK1P29120 753 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 PIK3CGP48736 1102 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 ALX1Q15699 326 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 KNOP1Q1ED39 458 aaKnown RBP6.36□□□□□ -1.39
VPS13D-201ENST00000011700 ZCCHC8Q6NZY4 707 aaKnown RBP6.36□□□□□ -1.39
VPS13D-201ENST00000011700 SEPT1Q8WYJ6 367 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 MSTO1Q9BUK6 570 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 DPH5Q9H2P9 285 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 SLC39A2Q9NP94 309 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 ZNF318Q5VUA4 2279 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 MED26O95402 600 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 GRK2P25098 689 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 TRPM8Q7Z2W7 1104 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 CPXCR1Q8N123 301 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 MCUQ8NE86 351 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 OSBPL1AQ9BXW6 950 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 STOML2Q9UJZ1 356 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 USP17L12C9JPN9 530 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 USP17L21D6R901 530 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 ERN1O75460 977 aaKnown RBP6.36□□□□□ -1.39
VPS13D-201ENST00000011700 PPP1R37O75864 691 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 SPANXN2Q5MJ10 180 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 AGAP9Q5VTM2 703 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 PDXDC2PQ6P474 469 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 BTNL9Q6UXG8 535 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 RBM46Q8TBY0 533 aaKnown RBP6.36□□□□□ -1.39
VPS13D-201ENST00000011700 SP110Q9HB58 689 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 KIAA1257Q9ULG3 409 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 FAM208AQ9UK61 1670 aaKnown RBP6.36□□□□□ -1.39
VPS13D-201ENST00000011700 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP6.36□□□□□ -1.39
VPS13D-201ENST00000011700 PIK3CDO00329 1044 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 ZC3H11AO75152 810 aaKnown RBP eCLIP6.36□□□□□ -1.393e-6■■■■□ 19.8
VPS13D-201ENST00000011700 EIF4A3P38919 411 aaKnown RBP6.36□□□□□ -1.39
VPS13D-201ENST00000011700 CCZ1BP86790 482 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 CCZ1P86791 482 aaPredicted RBP6.36□□□□□ -1.39
VPS13D-201ENST00000011700 BARGINQ6ZT62 677 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 KRT78Q8N1N4 520 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 USHBP1Q8N6Y0 703 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 TTC16Q8NEE8 873 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 CABLES1Q8TDN4 633 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 L3MBTL3Q96JM7 780 aaPredicted RBP6.36□□□□□ -1.39
VPS13D-201ENST00000011700 NEDD4LQ96PU5 975 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 DESI2Q9BSY9 194 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 SLIT1O75093 1534 aa6.36□□□□□ -1.39
VPS13D-201ENST00000011700 MAGEA13PA6NCF6 341 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 NBPF26B4DH59 902 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 ALDH1A2O94788 518 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 CYBBP04839 570 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 RPSAP08865 295 aaKnown RBP6.35□□□□□ -1.39
VPS13D-201ENST00000011700 RPL3P39023 403 aaKnown RBP6.35□□□□□ -1.39
VPS13D-201ENST00000011700 COPAP53621 1224 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 SCRN1Q12765 414 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 CNTN1Q12860 1018 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 SLC18A3Q16572 532 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 CLEC4FQ8N1N0 589 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 SUGCTQ9HAC7 445 aa6.35□□□□□ -1.39
VPS13D-201ENST00000011700 LSM7Q9UK45 103 aaKnown RBP6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms