RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 MFSD7Q6UXD7 560 aa11.38□□□□□ -0.59
USP28-201ENST00000003302 SHKBP1Q8TBC3 707 aa11.38□□□□□ -0.59
USP28-201ENST00000003302 NSMCE1Q8WV22 266 aa11.38□□□□□ -0.59
USP28-201ENST00000003302 RIT2Q99578 217 aa11.38□□□□□ -0.59
USP28-201ENST00000003302 PDCD2LQ9BRP1 358 aa11.38□□□□□ -0.59
USP28-201ENST00000003302 KDM4CQ9H3R0 1056 aa11.38□□□□□ -0.59
USP28-201ENST00000003302 MRPL11Q9Y3B7 192 aaKnown RBP11.38□□□□□ -0.59
USP28-201ENST00000003302 IVNS1ABPQ9Y6Y0 642 aa11.38□□□□□ -0.59
USP28-201ENST00000003302 COL11A1P12107 1806 aaPredicted RBP11.38□□□□□ -0.59
USP28-201ENST00000003302 MYO18AQ92614 2054 aaKnown RBP11.37□□□□□ -0.59
USP28-201ENST00000003302 PIK3R2O00459 728 aa11.37□□□□□ -0.59
USP28-201ENST00000003302 CBX6O95503 412 aa11.37□□□□□ -0.59
USP28-201ENST00000003302 AGTP01019 485 aa11.37□□□□□ -0.59
USP28-201ENST00000003302 TAC1P20366 129 aa11.37□□□□□ -0.59
USP28-201ENST00000003302 TARSP26639 723 aaKnown RBP11.37□□□□□ -0.59
USP28-201ENST00000003302 TGS1Q96RS0 853 aaKnown RBP11.37□□□□□ -0.59
USP28-201ENST00000003302 WNT8AQ9H1J5 351 aa11.37□□□□□ -0.59
USP28-201ENST00000003302 ANKFY1Q9P2R3 1169 aa11.37□□□□□ -0.59
USP28-201ENST00000003302 MIF4GDA9UHW6 222 aaKnown RBP11.37□□□□□ -0.59
USP28-201ENST00000003302 MAPTP10636 758 aaKnown RBP11.37□□□□□ -0.59
USP28-201ENST00000003302 ATF7P17544 494 aaPredicted RBP11.37□□□□□ -0.59
USP28-201ENST00000003302 ANXA13P27216 316 aa11.37□□□□□ -0.59
USP28-201ENST00000003302 GPC3P51654 580 aa11.37□□□□□ -0.59
USP28-201ENST00000003302 OVGP1Q12889 678 aa11.37□□□□□ -0.59
USP28-201ENST00000003302 GALNTL6Q49A17 601 aa11.37□□□□□ -0.59
USP28-201ENST00000003302 SLC27A3Q5K4L6 730 aa11.37□□□□□ -0.59
USP28-201ENST00000003302 MAP4K3Q8IVH8 894 aa11.37□□□□□ -0.59
USP28-201ENST00000003302 CCDC63Q8NA47 563 aa11.37□□□□□ -0.59
USP28-201ENST00000003302 SUPT20HQ8NEM7 779 aa11.37□□□□□ -0.59
USP28-201ENST00000003302 KMT5AQ9NQR1 393 aa11.37□□□□□ -0.59
USP28-201ENST00000003302 H0YIN7 160 aa11.37□□□□□ -0.59
USP28-201ENST00000003302 GZMAP12544 262 aa11.37□□□□□ -0.59
USP28-201ENST00000003302 RPA3P35244 121 aaPredicted RBP11.37□□□□□ -0.59
USP28-201ENST00000003302 PTP4A2Q12974 167 aa11.37□□□□□ -0.59
USP28-201ENST00000003302 MAMLD1Q13495 774 aa11.37□□□□□ -0.59
USP28-201ENST00000003302 MTERF2Q49AM1 385 aa11.37□□□□□ -0.59
USP28-201ENST00000003302 C6orf118Q5T5N4 469 aa11.37□□□□□ -0.59
USP28-201ENST00000003302 MON1BQ7L1V2 547 aa11.37□□□□□ -0.59
USP28-201ENST00000003302 GGA2Q9UJY4 613 aa11.37□□□□□ -0.59
USP28-201ENST00000003302 COQ4Q9Y3A0 265 aa11.37□□□□□ -0.59
USP28-201ENST00000003302 PASKQ96RG2 1323 aa11.37□□□□□ -0.59
USP28-201ENST00000003302 MTA2O94776 668 aa11.36□□□□□ -0.59
USP28-201ENST00000003302 PECAM1P16284 738 aaPredicted RBP11.36□□□□□ -0.59
USP28-201ENST00000003302 ALCAMQ13740 583 aa11.36□□□□□ -0.59
USP28-201ENST00000003302 DLGAP5Q15398 846 aa11.36□□□□□ -0.59
USP28-201ENST00000003302 SMAD1Q15797 465 aaKnown RBP11.36□□□□□ -0.59
USP28-201ENST00000003302 PCNX4Q63HM2 1172 aa11.36□□□□□ -0.59
USP28-201ENST00000003302 CCDC33Q8N5R6 958 aa11.36□□□□□ -0.59
USP28-201ENST00000003302 CENPTQ96BT3 561 aa11.36□□□□□ -0.59
USP28-201ENST00000003302 TARS2Q9BW92 718 aaKnown RBP11.36□□□□□ -0.59
USP28-201ENST00000003302 ASAP2O43150 1006 aa11.36□□□□□ -0.59
USP28-201ENST00000003302 DNAJC8O75937 253 aaPredicted RBP11.36□□□□□ -0.59
USP28-201ENST00000003302 IZUMO3Q5VZ72 239 aa11.36□□□□□ -0.59
USP28-201ENST00000003302 CEP120Q8N960 986 aa11.36□□□□□ -0.59
USP28-201ENST00000003302 PTPRN2Q92932 1015 aa11.36□□□□□ -0.59
USP28-201ENST00000003302 PODXLO00592 558 aa11.36□□□□□ -0.59
USP28-201ENST00000003302 ANP32DO95626 131 aa11.36□□□□□ -0.59
USP28-201ENST00000003302 HLA-DRAP01903 254 aa11.36□□□□□ -0.59
USP28-201ENST00000003302 SSTR1P30872 391 aa11.36□□□□□ -0.59
USP28-201ENST00000003302 ARFGAP1Q8N6T3 406 aa11.36□□□□□ -0.59
USP28-201ENST00000003302 NT5C1BQ96P26 610 aa11.36□□□□□ -0.59
USP28-201ENST00000003302 TMEM8AQ9HCN3 771 aa11.36□□□□□ -0.59
USP28-201ENST00000003302 CHKBQ9Y259 395 aa11.36□□□□□ -0.59
USP28-201ENST00000003302 A6NNZ2 444 aa11.36□□□□□ -0.59
USP28-201ENST00000003302 TNNI1P19237 187 aa11.36□□□□□ -0.59
USP28-201ENST00000003302 CALCOCO2Q13137 446 aa11.36□□□□□ -0.59
USP28-201ENST00000003302 TUBB8Q3ZCM7 444 aa11.36□□□□□ -0.59
USP28-201ENST00000003302 SPDYE2Q495Y8 402 aa11.36□□□□□ -0.59
USP28-201ENST00000003302 MFSD5Q6N075 450 aa11.36□□□□□ -0.59
USP28-201ENST00000003302 SAMD7Q7Z3H4 446 aa11.36□□□□□ -0.59
USP28-201ENST00000003302 ASAP3Q8TDY4 903 aa11.36□□□□□ -0.59
USP28-201ENST00000003302 FAM151AQ8WW52 585 aa11.36□□□□□ -0.59
USP28-201ENST00000003302 MAML1Q92585 1016 aa11.36□□□□□ -0.59
USP28-201ENST00000003302 RBM15Q96T37 977 aaKnown RBP eCLIP11.36□□□□□ -0.59
USP28-201ENST00000003302 MAK16Q9BXY0 300 aaKnown RBP11.36□□□□□ -0.59
USP28-201ENST00000003302 CNOT10Q9H9A5 744 aaKnown RBP11.36□□□□□ -0.59
USP28-201ENST00000003302 MTRF1LQ9UGC7 380 aaKnown RBP11.36□□□□□ -0.59
USP28-201ENST00000003302 PRKAG3Q9UGI9 489 aa11.36□□□□□ -0.59
USP28-201ENST00000003302 CNOT7Q9UIV1 285 aaKnown RBP11.36□□□□□ -0.59
USP28-201ENST00000003302 HAO1Q9UJM8 370 aa11.36□□□□□ -0.59
USP28-201ENST00000003302 USP15Q9Y4E8 981 aaPredicted RBP11.36□□□□□ -0.59
USP28-201ENST00000003302 NR2E3Q9Y5X4 410 aa11.36□□□□□ -0.59
USP28-201ENST00000003302 DIAPH2O60879 1101 aa11.35□□□□□ -0.59
USP28-201ENST00000003302 IFNB1P01574 187 aa11.35□□□□□ -0.59
USP28-201ENST00000003302 T-ENOLP0DO92 83 aa11.35□□□□□ -0.59
USP28-201ENST00000003302 KLRC2P26717 231 aa11.35□□□□□ -0.59
USP28-201ENST00000003302 GCLCP48506 637 aaPredicted RBP11.35□□□□□ -0.59
USP28-201ENST00000003302 RSBN1LQ6PCB5 846 aaPredicted RBP11.35□□□□□ -0.59
USP28-201ENST00000003302 SCARA5Q6ZMJ2 495 aa11.35□□□□□ -0.59
USP28-201ENST00000003302 C15orf39Q6ZRI6 1047 aa11.35□□□□□ -0.59
USP28-201ENST00000003302 C12orf50Q8NA57 414 aaPredicted RBP11.35□□□□□ -0.59
USP28-201ENST00000003302 MYCBPQ99417 103 aaPredicted RBP11.35□□□□□ -0.59
USP28-201ENST00000003302 MAGEB5Q9BZ81 275 aa11.35□□□□□ -0.59
USP28-201ENST00000003302 TMEM206Q9H813 350 aa11.35□□□□□ -0.59
USP28-201ENST00000003302 ZNF395Q9H8N7 513 aaPredicted RBP11.35□□□□□ -0.59
USP28-201ENST00000003302 SEPT9Q9UHD8 586 aaPredicted RBP11.35□□□□□ -0.59
USP28-201ENST00000003302 CYTH4Q9UIA0 394 aa11.35□□□□□ -0.59
USP28-201ENST00000003302 RASAL2Q9UJF2 1139 aa11.35□□□□□ -0.59
USP28-201ENST00000003302 ANAPC5Q9UJX4 755 aa11.35□□□□□ -0.59
USP28-201ENST00000003302 CEP83Q9Y592 693 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms