RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 GPR176Q14439 515 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 ADCK5Q3MIX3 580 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 HYIQ5T013 277 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 C16orf54Q6UWD8 224 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 ARHGAP36Q6ZRI8 547 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 SVIPQ8NHG7 77 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 GPT2Q8TD30 523 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 SSH1Q8WYL5 1049 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 NSMCE3Q96MG7 304 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 SIK3Q9Y2K2 1263 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 IGF1RP08069 1367 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 SCN5AQ14524 2016 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 MAPK13O15264 365 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 HDAC3O15379 428 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 WSCD2Q2TBF2 565 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 SETMARQ53H47 684 aaPredicted RBP3.76□□□□□ -1.81
SCN1A-221ENST00000641996 RNF219Q5W0B1 726 aaPredicted RBP3.76□□□□□ -1.81
SCN1A-221ENST00000641996 KIAA1841Q6NSI8 718 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 ATG16L2Q8NAA4 619 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 KCTD6Q8NC69 237 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 LRRC39Q96DD0 335 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 EIF2B3Q9NR50 452 aaKnown RBP3.76□□□□□ -1.81
SCN1A-221ENST00000641996 RGSL1A5PLK6 1076 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 DNAJB5O75953 348 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 TMEM191BP0C7N4 346 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 CD40LGP29965 261 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 AFF1P51825 1210 aaKnown RBP3.76□□□□□ -1.81
SCN1A-221ENST00000641996 STX17P56962 302 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 TKFCQ3LXA3 575 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 KRT39Q6A163 491 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 HDDC2Q7Z4H3 204 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 PLD3Q8IV08 490 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 GPR161Q8N6U8 529 aaKnown RBP3.76□□□□□ -1.81
SCN1A-221ENST00000641996 NAT8LQ8N9F0 302 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 TRPC7Q9HCX4 862 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 DOCK11Q5JSL3 2073 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 FAM155AB1AL88 458 aaPredicted RBP3.76□□□□□ -1.81
SCN1A-221ENST00000641996 SLC25A17O43808 307 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 DRICH1Q6PGQ1 229 aaPredicted RBP3.76□□□□□ -1.81
SCN1A-221ENST00000641996 C11orf88Q6PI97 169 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 TRAF7Q6Q0C0 670 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 BLOC1S2Q6QNY1 142 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 TRMT10CQ7L0Y3 403 aaKnown RBP3.76□□□□□ -1.81
SCN1A-221ENST00000641996 ZNF540Q8NDQ6 660 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 PSD4Q8NDX1 1056 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 AHCYL2Q96HN2 611 aaKnown RBP3.76□□□□□ -1.81
SCN1A-221ENST00000641996 ELF4Q99607 663 aaPredicted RBP3.76□□□□□ -1.81
SCN1A-221ENST00000641996 TINF2Q9BSI4 451 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 SELENONQ9NZV5 590 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 AMACRQ9UHK6 382 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 KNTC1P50748 2209 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 HMX3A6NHT5 357 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 PDPK1O15530 556 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 NFICP08651 508 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 STX2P32856 288 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 STAT3P40763 770 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 OR1G1P47890 313 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 KARSQ15046 597 aaKnown RBP3.76□□□□□ -1.81
SCN1A-221ENST00000641996 TAZQ16635 292 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 ARMCX4Q5H9R4 360 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 STXBP5Q5T5C0 1151 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 ANKRD35Q8N283 1001 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 NSMCE1Q8WV22 266 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 STN1Q9H668 368 aaKnown RBP3.76□□□□□ -1.81
SCN1A-221ENST00000641996 SLC39A2Q9NP94 309 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 SNTG2Q9NY99 539 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 HSPBP1Q9NZL4 362 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 KIF17Q9P2E2 1029 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 CBY3A6NI87 242 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 TTLL8A6PVC2 850 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 CFAP99D6REC4 459 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 FPGTO14772 594 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 XPO1O14980 1071 aaKnown RBP3.76□□□□□ -1.81
SCN1A-221ENST00000641996 AP1G1O43747 822 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 F2P00734 622 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 TBC1D9BQ66K14 1250 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 PIK3AP1Q6ZUJ8 805 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 KRT77Q7Z794 578 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 S100A7AQ86SG5 101 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 TP53INP1Q96A56 240 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 PPP1R13BQ96KQ4 1090 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 CAMK1GQ96NX5 476 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 CRBNQ96SW2 442 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 OSBPL5Q9H0X9 879 aaPredicted RBP3.76□□□□□ -1.81
SCN1A-221ENST00000641996 PCDH18Q9HCL0 1135 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 QPCTLQ9NXS2 382 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 EHD3Q9NZN3 535 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 A0A087WZG4 1122 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 ATP6V1G2-DDX39BF2Z307 99 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 RASGRF2O14827 1237 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 CTNND1O60716 968 aaKnown RBP3.76□□□□□ -1.81
SCN1A-221ENST00000641996 AKR7A3O95154 331 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 PGM3O95394 542 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 TBX18O95935 607 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 AFPP02771 609 aaKnown RBP3.76□□□□□ -1.81
SCN1A-221ENST00000641996 CYP2E1P05181 493 aaPredicted RBP3.76□□□□□ -1.81
SCN1A-221ENST00000641996 ASMTP46597 345 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 DCTN2Q13561 401 aaKnown RBP3.76□□□□□ -1.81
SCN1A-221ENST00000641996 STRA8Q7Z7C7 330 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 STAMQ92783 540 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms