RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 RAPGEF3O95398 923 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 CCDC130P13994 396 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 TYSND1Q2T9J0 566 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 SPANXN2Q5MJ10 180 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 TMC3Q7Z5M5 1100 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 UBE2Q1Q7Z7E8 422 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 ZNF354CQ86Y25 554 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 SLC30A5Q8TAD4 765 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 SLC10A4Q96EP9 437 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 UNKQ9C0B0 810 aaKnown RBP4.9□□□□□ -1.62
SCN1A-220ENST00000641603 SMYD3Q9H7B4 428 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 HDAC6Q9UBN7 1215 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 HPSEQ9Y251 543 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 MROH7-TTC4A0A0A0MT08 1334 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 RNMTO43148 476 aaKnown RBP4.9□□□□□ -1.62
SCN1A-220ENST00000641603 PSMD3O43242 534 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 ALDH5A1P51649 535 aaPredicted RBP4.9□□□□□ -1.62
SCN1A-220ENST00000641603 MYL6P60660 151 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 MFSD5Q6N075 450 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 DHDDSQ86SQ9 333 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 MLXIPQ9HAP2 919 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 SLC39A2Q9NP94 309 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 CCDC59Q9P031 241 aaKnown RBP4.9□□□□□ -1.62
SCN1A-220ENST00000641603 G3BP2Q9UN86 482 aaKnown RBP4.9□□□□□ -1.62
SCN1A-220ENST00000641603 ADAMTS12P58397 1594 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 ESYT3A0FGR9 886 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 LZTS3O60299 673 aaPredicted RBP4.9□□□□□ -1.62
SCN1A-220ENST00000641603 PGM3O95394 542 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 KRT17Q04695 432 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 ENPEPQ07075 957 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 MCL1Q07820 350 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 DPYSQ14117 519 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 RASA3Q14644 834 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 CYP2U1Q7Z449 544 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 AADATQ8N5Z0 425 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 PTPRN2Q92932 1015 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 C9orf16Q9BUW7 83 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 PRDM16Q9HAZ2 1276 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 VTI1BQ9UEU0 232 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 HERC5Q9UII4 1024 aaKnown RBP4.9□□□□□ -1.62
SCN1A-220ENST00000641603 IQGAP3Q86VI3 1631 aa4.9□□□□□ -1.63
SCN1A-220ENST00000641603 PNPLA7Q6ZV29 1317 aa4.9□□□□□ -1.63
SCN1A-220ENST00000641603 CFLARO15519 480 aa4.9□□□□□ -1.63
SCN1A-220ENST00000641603 SRGAP2CP0DJJ0 459 aa4.9□□□□□ -1.63
SCN1A-220ENST00000641603 COPZ1P61923 177 aa4.9□□□□□ -1.63
SCN1A-220ENST00000641603 PDIA5Q14554 519 aa4.9□□□□□ -1.63
SCN1A-220ENST00000641603 MEA1Q16626 185 aa4.9□□□□□ -1.63
SCN1A-220ENST00000641603 ADCY4Q8NFM4 1077 aa4.9□□□□□ -1.63
SCN1A-220ENST00000641603 NPHS2Q9NP85 383 aa4.9□□□□□ -1.63
SCN1A-220ENST00000641603 SHOC2Q9UQ13 582 aa4.9□□□□□ -1.63
SCN1A-220ENST00000641603 TNPO2O14787 897 aaKnown RBP4.9□□□□□ -1.63
SCN1A-220ENST00000641603 SNX3O60493 162 aa4.9□□□□□ -1.63
SCN1A-220ENST00000641603 LDHAP00338 332 aaKnown RBP4.9□□□□□ -1.63
SCN1A-220ENST00000641603 ZNF200P98182 395 aaPredicted RBP4.9□□□□□ -1.63
SCN1A-220ENST00000641603 SLC5A9Q2M3M2 681 aa4.9□□□□□ -1.63
SCN1A-220ENST00000641603 PLEKHA7Q6IQ23 1121 aa4.9□□□□□ -1.63
SCN1A-220ENST00000641603 KBTBD8Q8NFY9 601 aa4.9□□□□□ -1.63
SCN1A-220ENST00000641603 NMD3Q96D46 503 aaKnown RBP4.9□□□□□ -1.63
SCN1A-220ENST00000641603 TSPAN17Q96FV3 270 aa4.9□□□□□ -1.63
SCN1A-220ENST00000641603 MAP3K14Q99558 947 aa4.9□□□□□ -1.63
SCN1A-220ENST00000641603 KLHL31Q9H511 634 aa4.9□□□□□ -1.63
SCN1A-220ENST00000641603 PHF8Q9UPP1 1060 aa4.9□□□□□ -1.63
SCN1A-220ENST00000641603 CROCC2H7BZ55 1655 aa4.9□□□□□ -1.63
SCN1A-220ENST00000641603 H7C0C1 242 aa4.9□□□□□ -1.63
SCN1A-220ENST00000641603 SH3BP5O60239 455 aa4.9□□□□□ -1.63
SCN1A-220ENST00000641603 RFC5P40937 340 aa4.9□□□□□ -1.63
SCN1A-220ENST00000641603 ATP5OP48047 213 aa4.9□□□□□ -1.63
SCN1A-220ENST00000641603 RAB27AP51159 221 aa4.9□□□□□ -1.63
SCN1A-220ENST00000641603 BARGINQ6ZT62 677 aa4.9□□□□□ -1.63
SCN1A-220ENST00000641603 CHST3Q7LGC8 479 aa4.9□□□□□ -1.63
SCN1A-220ENST00000641603 AKAP14Q86UN6 197 aa4.9□□□□□ -1.63
SCN1A-220ENST00000641603 ZNF589Q86UQ0 364 aaPredicted RBP4.9□□□□□ -1.63
SCN1A-220ENST00000641603 TCAIMQ8N3R3 496 aa4.9□□□□□ -1.63
SCN1A-220ENST00000641603 HDAC7Q8WUI4 952 aa4.9□□□□□ -1.63
SCN1A-220ENST00000641603 SSU72Q9NP77 194 aaKnown RBP4.9□□□□□ -1.63
SCN1A-220ENST00000641603 GINM1Q9NU53 330 aa4.9□□□□□ -1.63
SCN1A-220ENST00000641603 VIRMAQ69YN4 1812 aaKnown RBP4.9□□□□□ -1.63
SCN1A-220ENST00000641603 LRRIQ4A6NIV6 560 aa4.9□□□□□ -1.63
SCN1A-220ENST00000641603 H3BRJ5 948 aa4.9□□□□□ -1.63
SCN1A-220ENST00000641603 PTDSS1P48651 473 aaKnown RBP4.9□□□□□ -1.63
SCN1A-220ENST00000641603 CCDC157Q569K6 752 aa4.9□□□□□ -1.63
SCN1A-220ENST00000641603 DARS2Q6PI48 645 aaKnown RBP4.9□□□□□ -1.63
SCN1A-220ENST00000641603 STRA8Q7Z7C7 330 aa4.9□□□□□ -1.63
SCN1A-220ENST00000641603 GIMAP8Q8ND71 665 aaPredicted RBP4.9□□□□□ -1.63
SCN1A-220ENST00000641603 CCDC90BQ9GZT6 254 aa4.9□□□□□ -1.63
SCN1A-220ENST00000641603 VPS11Q9H270 941 aa4.9□□□□□ -1.63
SCN1A-220ENST00000641603 ADA2Q9NZK5 511 aa4.9□□□□□ -1.63
SCN1A-220ENST00000641603 WDR35Q9P2L0 1181 aa4.9□□□□□ -1.63
SCN1A-220ENST00000641603 PRELID1Q9Y255 219 aa4.9□□□□□ -1.63
SCN1A-220ENST00000641603 ZNF532Q9HCE3 1301 aa4.9□□□□□ -1.63
SCN1A-220ENST00000641603 DNALI1O14645 258 aaPredicted RBP4.9□□□□□ -1.63
SCN1A-220ENST00000641603 P3H1Q32P28 736 aa4.9□□□□□ -1.63
SCN1A-220ENST00000641603 TSHZ1Q6ZSZ6 1077 aa4.9□□□□□ -1.63
SCN1A-220ENST00000641603 DYMQ7RTS9 669 aa4.9□□□□□ -1.63
SCN1A-220ENST00000641603 ZSCAN29Q8IWY8 852 aaPredicted RBP4.9□□□□□ -1.63
SCN1A-220ENST00000641603 SIRT2Q8IXJ6 389 aa4.9□□□□□ -1.63
SCN1A-220ENST00000641603 PPM1KQ8N3J5 372 aa4.9□□□□□ -1.63
SCN1A-220ENST00000641603 TMIEQ8NEW7 156 aa4.9□□□□□ -1.63
SCN1A-220ENST00000641603 CASKIN2Q8WXE0 1202 aa4.9□□□□□ -1.63
SCN1A-220ENST00000641603 ARL8AQ96BM9 186 aa4.9□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms