RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 ABHD15Q6UXT9 468 aa0.95□□□□□ -2.26
VPS35-212ENST00000640313 ESPNLQ6ZVH7 1005 aa0.95□□□□□ -2.26
VPS35-212ENST00000640313 DRC7Q8IY82 874 aa0.95□□□□□ -2.26
VPS35-212ENST00000640313 ZZZ3Q8IYH5 903 aa0.95□□□□□ -2.26
VPS35-212ENST00000640313 SYNPOQ8N3V7 929 aa0.95□□□□□ -2.26
VPS35-212ENST00000640313 KIAA1958Q8N8K9 716 aa0.95□□□□□ -2.26
VPS35-212ENST00000640313 NRACQ8N912 160 aa0.95□□□□□ -2.26
VPS35-212ENST00000640313 COQ8BQ96D53 544 aa0.95□□□□□ -2.26
VPS35-212ENST00000640313 SH2D3AQ9BRG2 576 aa0.95□□□□□ -2.26
VPS35-212ENST00000640313 SLCO5A1Q9H2Y9 848 aa0.95□□□□□ -2.26
VPS35-212ENST00000640313 ACBD3Q9H3P7 528 aa0.95□□□□□ -2.26
VPS35-212ENST00000640313 POFUT1Q9H488 388 aa0.95□□□□□ -2.26
VPS35-212ENST00000640313 PCIF1Q9H4Z3 704 aa0.95□□□□□ -2.26
VPS35-212ENST00000640313 ZNF408Q9H9D4 720 aa0.95□□□□□ -2.26
VPS35-212ENST00000640313 CAPN10Q9HC96 672 aa0.95□□□□□ -2.26
VPS35-212ENST00000640313 ERRFI1Q9UJM3 462 aaPredicted RBP0.95□□□□□ -2.26
VPS35-212ENST00000640313 ST3GAL5Q9UNP4 418 aa0.95□□□□□ -2.26
VPS35-212ENST00000640313 MTO1Q9Y2Z2 717 aaKnown RBP0.95□□□□□ -2.26
VPS35-212ENST00000640313 R3HCC1Q9Y3T6 440 aaKnown RBP0.95□□□□□ -2.26
VPS35-212ENST00000640313 ATRNL1Q5VV63 1379 aa0.95□□□□□ -2.26
VPS35-212ENST00000640313 A0A1W2PS29 197 aa0.94□□□□□ -2.26
VPS35-212ENST00000640313 C4orf47A7E2U8 309 aa0.94□□□□□ -2.26
VPS35-212ENST00000640313 E5RJQ4 531 aa0.94□□□□□ -2.26
VPS35-212ENST00000640313 H7C1D1 291 aa0.94□□□□□ -2.26
VPS35-212ENST00000640313 ELL2O00472 640 aaPredicted RBP0.94□□□□□ -2.26
VPS35-212ENST00000640313 KLF4O43474 513 aa0.94□□□□□ -2.26
VPS35-212ENST00000640313 JTBO76095 146 aa0.94□□□□□ -2.26
VPS35-212ENST00000640313 PRSS23O95084 383 aa0.94□□□□□ -2.26
VPS35-212ENST00000640313 POMCP01189 267 aa0.94□□□□□ -2.26
VPS35-212ENST00000640313 HNRNPCP07910 306 aaKnown RBP eCLIP0.94□□□□□ -2.26
VPS35-212ENST00000640313 PFKMP08237 780 aa0.94□□□□□ -2.26
VPS35-212ENST00000640313 TGFB3P10600 412 aa0.94□□□□□ -2.26
VPS35-212ENST00000640313 DRD4P21917 467 aa0.94□□□□□ -2.26
VPS35-212ENST00000640313 HTR6P50406 440 aa0.94□□□□□ -2.26
VPS35-212ENST00000640313 NXPH1P58417 271 aa0.94□□□□□ -2.26
VPS35-212ENST00000640313 MGAT5Q09328 741 aa0.94□□□□□ -2.26
VPS35-212ENST00000640313 ZC3H12BQ5HYM0 836 aaKnown RBP0.94□□□□□ -2.26
VPS35-212ENST00000640313 RRP12Q5JTH9 1297 aaKnown RBP0.94□□□□□ -2.26
VPS35-212ENST00000640313 PRAMEF17Q5VTA0 474 aa0.94□□□□□ -2.26
VPS35-212ENST00000640313 CATSPERGQ6ZRH7 1159 aa0.94□□□□□ -2.26
VPS35-212ENST00000640313 ZNF572Q7Z3I7 529 aaPredicted RBP0.94□□□□□ -2.26
VPS35-212ENST00000640313 MCF2L2Q86YR7 1114 aa0.94□□□□□ -2.26
VPS35-212ENST00000640313 RFX6Q8HWS3 928 aa0.94□□□□□ -2.26
VPS35-212ENST00000640313 GLB1L2Q8IW92 636 aa0.94□□□□□ -2.26
VPS35-212ENST00000640313 LILRB2Q8N423 598 aa0.94□□□□□ -2.26
VPS35-212ENST00000640313 NANOGP1Q8N7R0 232 aa0.94□□□□□ -2.26
VPS35-212ENST00000640313 CHST14Q8NCH0 376 aa0.94□□□□□ -2.26
VPS35-212ENST00000640313 PRSS3P2Q8NHM4 247 aa0.94□□□□□ -2.26
VPS35-212ENST00000640313 C16orf52Q8NHV5 167 aa0.94□□□□□ -2.26
VPS35-212ENST00000640313 HNRNPLLQ8WVV9 542 aaKnown RBP0.94□□□□□ -2.26
VPS35-212ENST00000640313 RSAD2Q8WXG1 361 aa0.94□□□□□ -2.26
VPS35-212ENST00000640313 DNASE2BQ8WZ79 361 aa0.94□□□□□ -2.26
VPS35-212ENST00000640313 REPS1Q96D71 796 aa0.94□□□□□ -2.26
VPS35-212ENST00000640313 THOC3Q96J01 351 aaKnown RBP0.94□□□□□ -2.26
VPS35-212ENST00000640313 ORAI2Q96SN7 254 aa0.94□□□□□ -2.26
VPS35-212ENST00000640313 PNKPQ96T60 521 aa0.94□□□□□ -2.26
VPS35-212ENST00000640313 ELF4Q99607 663 aaPredicted RBP0.94□□□□□ -2.26
VPS35-212ENST00000640313 ANO3Q9BYT9 981 aa0.94□□□□□ -2.26
VPS35-212ENST00000640313 KLC4Q9NSK0 619 aa0.94□□□□□ -2.26
VPS35-212ENST00000640313 INTS13Q9NVM9 706 aa0.94□□□□□ -2.26
VPS35-212ENST00000640313 USP25Q9UHP3 1055 aa0.94□□□□□ -2.26
VPS35-212ENST00000640313 USP18Q9UMW8 372 aa0.94□□□□□ -2.26
VPS35-212ENST00000640313 MRPS23Q9Y3D9 190 aaKnown RBP0.94□□□□□ -2.26
VPS35-212ENST00000640313 SPO11Q9Y5K1 396 aa0.94□□□□□ -2.26
VPS35-212ENST00000640313 FNDC1Q4ZHG4 1894 aaPredicted RBP0.94□□□□□ -2.26
VPS35-212ENST00000640313 A0A1B0GVY2 172 aa0.93□□□□□ -2.26
VPS35-212ENST00000640313 PTPDC1A2A3K4 754 aa0.93□□□□□ -2.26
VPS35-212ENST00000640313 M0R2C6 588 aa0.93□□□□□ -2.26
VPS35-212ENST00000640313 ADAM10O14672 748 aa0.93□□□□□ -2.26
VPS35-212ENST00000640313 BRINP1O60477 761 aa0.93□□□□□ -2.26
VPS35-212ENST00000640313 PRAMEF4O60810 478 aa0.93□□□□□ -2.26
VPS35-212ENST00000640313 TMEM127O75204 238 aa0.93□□□□□ -2.26
VPS35-212ENST00000640313 KRTAP5-8O75690 187 aa0.93□□□□□ -2.26
VPS35-212ENST00000640313 BCAR3O75815 825 aa0.93□□□□□ -2.26
VPS35-212ENST00000640313 DNAJB5O75953 348 aa0.93□□□□□ -2.26
VPS35-212ENST00000640313 ABLIM3O94929 683 aa0.93□□□□□ -2.26
VPS35-212ENST00000640313 TTLL1O95922 423 aa0.93□□□□□ -2.26
VPS35-212ENST00000640313 FGRP09769 529 aa0.93□□□□□ -2.26
VPS35-212ENST00000640313 NHLRC4P0CG21 123 aaPredicted RBP0.93□□□□□ -2.26
VPS35-212ENST00000640313 T-ENOLP0DO92 83 aa0.93□□□□□ -2.26
VPS35-212ENST00000640313 ALOX15P16050 662 aaPredicted RBP0.93□□□□□ -2.26
VPS35-212ENST00000640313 SLC9A1P19634 815 aa0.93□□□□□ -2.26
VPS35-212ENST00000640313 GATA3P23771 443 aa0.93□□□□□ -2.26
VPS35-212ENST00000640313 CTSSP25774 331 aa0.93□□□□□ -2.26
VPS35-212ENST00000640313 CCT8P50990 548 aa0.93□□□□□ -2.26
VPS35-212ENST00000640313 KRTAP10-3P60369 221 aa0.93□□□□□ -2.26
VPS35-212ENST00000640313 SP140Q13342 867 aa0.93□□□□□ -2.26
VPS35-212ENST00000640313 RAB33AQ14088 237 aa0.93□□□□□ -2.26
VPS35-212ENST00000640313 LRRC32Q14392 662 aa0.93□□□□□ -2.26
VPS35-212ENST00000640313 LCE3AQ5TA76 89 aa0.93□□□□□ -2.26
VPS35-212ENST00000640313 CEP85Q6P2H3 762 aa0.93□□□□□ -2.26
VPS35-212ENST00000640313 TSHZ1Q6ZSZ6 1077 aa0.93□□□□□ -2.26
VPS35-212ENST00000640313 SPATC1Q76KD6 591 aa0.93□□□□□ -2.26
VPS35-212ENST00000640313 DDX53Q86TM3 631 aaKnown RBP0.93□□□□□ -2.26
VPS35-212ENST00000640313 SLC41A1Q8IVJ1 513 aa0.93□□□□□ -2.26
VPS35-212ENST00000640313 SLC30A5Q8TAD4 765 aa0.93□□□□□ -2.26
VPS35-212ENST00000640313 NUP133Q8WUM0 1156 aa0.93□□□□□ -2.26
VPS35-212ENST00000640313 ZNF480Q8WV37 535 aa0.93□□□□□ -2.26
VPS35-212ENST00000640313 LPIN2Q92539 896 aa0.93□□□□□ -2.26
VPS35-212ENST00000640313 RTF1Q92541 710 aaKnown RBP0.93□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms