RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 HOXD13P35453 343 aa19.85■□□□□ 0.77
CLN3-259ENST00000637551 KCNC3Q14003 757 aa19.85■□□□□ 0.77
CLN3-259ENST00000637551 NFIL3Q16649 462 aa19.85■□□□□ 0.77
CLN3-259ENST00000637551 CRELD2Q6UXH1 353 aaPredicted RBP19.85■□□□□ 0.77
CLN3-259ENST00000637551 PDZRN4Q6ZMN7 1036 aaPredicted RBP19.85■□□□□ 0.77
CLN3-259ENST00000637551 ALYREFQ86V81 257 aaKnown RBP19.85■□□□□ 0.77
CLN3-259ENST00000637551 GRAMD1CQ8IYS0 662 aa19.85■□□□□ 0.77
CLN3-259ENST00000637551 GUF1Q8N442 669 aaKnown RBP19.85■□□□□ 0.77
CLN3-259ENST00000637551 KIAA0895Q8NCT3 520 aa19.85■□□□□ 0.77
CLN3-259ENST00000637551 UBE2ZQ9H832 354 aaPredicted RBP19.85■□□□□ 0.77
CLN3-259ENST00000637551 RXFP1Q9HBX9 757 aa19.85■□□□□ 0.77
CLN3-259ENST00000637551 AGPAT3Q9NRZ7 376 aa19.85■□□□□ 0.77
CLN3-259ENST00000637551 DPP7Q9UHL4 492 aa19.85■□□□□ 0.77
CLN3-259ENST00000637551 ARHGEF37A1IGU5 675 aa19.84■□□□□ 0.77
CLN3-259ENST00000637551 CASTOR2A6NHX0 329 aa19.84■□□□□ 0.77
CLN3-259ENST00000637551 SYN3O14994 580 aa19.84■□□□□ 0.77
CLN3-259ENST00000637551 TGFB1I1O43294 461 aa19.84■□□□□ 0.77
CLN3-259ENST00000637551 TADA2AO75478 443 aa19.84■□□□□ 0.77
CLN3-259ENST00000637551 KIF4AO95239 1232 aa19.84■□□□□ 0.77
CLN3-259ENST00000637551 HOXB8P17481 243 aaPredicted RBP19.84■□□□□ 0.77
CLN3-259ENST00000637551 PPP1R2P41236 205 aa19.84■□□□□ 0.77
CLN3-259ENST00000637551 TNFSF9P41273 254 aa19.84■□□□□ 0.77
CLN3-259ENST00000637551 STK4Q13043 487 aa19.84■□□□□ 0.77
CLN3-259ENST00000637551 ADAM15Q13444 863 aa19.84■□□□□ 0.77
CLN3-259ENST00000637551 LEXMQ3ZCV2 418 aa19.84■□□□□ 0.77
CLN3-259ENST00000637551 GLRA4Q5JXX5 417 aa19.84■□□□□ 0.77
CLN3-259ENST00000637551 KIAA0319Q5VV43 1072 aa19.84■□□□□ 0.77
CLN3-259ENST00000637551 SPATA1Q5VX52 437 aa19.84■□□□□ 0.77
CLN3-259ENST00000637551 ELMSAN1Q6PJG2 1045 aa19.84■□□□□ 0.77
CLN3-259ENST00000637551 BEST2Q8NFU1 509 aa19.84■□□□□ 0.77
CLN3-259ENST00000637551 PIK3R5Q8WYR1 880 aa19.84■□□□□ 0.77
CLN3-259ENST00000637551 OXCT2Q9BYC2 517 aaPredicted RBP19.84■□□□□ 0.77
CLN3-259ENST00000637551 SLC39A2Q9NP94 309 aa19.84■□□□□ 0.77
CLN3-259ENST00000637551 FAM50BQ9Y247 325 aa19.84■□□□□ 0.77
CLN3-259ENST00000637551 VWA8A3KMH1 1905 aa19.83■□□□□ 0.77
CLN3-259ENST00000637551 LACTBL1A8MY62 500 aa19.83■□□□□ 0.77
CLN3-259ENST00000637551 PODXLO00592 558 aa19.83■□□□□ 0.77
CLN3-259ENST00000637551 B3GAT3O94766 335 aa19.83■□□□□ 0.77
CLN3-259ENST00000637551 CASP1P29466 404 aa19.83■□□□□ 0.77
CLN3-259ENST00000637551 AARSP49588 968 aaKnown RBP eCLIP19.83■□□□□ 0.77
CLN3-259ENST00000637551 CLCNKBP51801 687 aa19.83■□□□□ 0.77
CLN3-259ENST00000637551 SOX4Q06945 474 aaPredicted RBP19.83■□□□□ 0.77
CLN3-259ENST00000637551 ENPEPQ07075 957 aa19.83■□□□□ 0.77
CLN3-259ENST00000637551 TMEM132DQ14C87 1099 aa19.83■□□□□ 0.77
CLN3-259ENST00000637551 SKIV2LQ15477 1246 aaKnown RBP19.83■□□□□ 0.77
CLN3-259ENST00000637551 PLPP4Q5VZY2 271 aa19.83■□□□□ 0.77
CLN3-259ENST00000637551 GLIS3Q8NEA6 775 aa19.83■□□□□ 0.77
CLN3-259ENST00000637551 HDAC7Q8WUI4 952 aa19.83■□□□□ 0.77
CLN3-259ENST00000637551 KIF12Q96FN5 646 aa19.83■□□□□ 0.77
CLN3-259ENST00000637551 CBWD1Q9BRT8 395 aa19.83■□□□□ 0.77
CLN3-259ENST00000637551 HSPBP1Q9NZL4 362 aa19.83■□□□□ 0.77
CLN3-259ENST00000637551 TRAF3IP3Q9Y228 551 aa19.83■□□□□ 0.77
CLN3-259ENST00000637551 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP19.82■□□□□ 0.76
CLN3-259ENST00000637551 ZNF233A6NK53 670 aa19.82■□□□□ 0.76
CLN3-259ENST00000637551 TISP43B9A030 160 aa19.82■□□□□ 0.76
CLN3-259ENST00000637551 MAPK13O15264 365 aa19.82■□□□□ 0.76
CLN3-259ENST00000637551 PRPF40AO75400 957 aaKnown RBP19.82■□□□□ 0.76
CLN3-259ENST00000637551 CXCL14O95715 111 aa19.82■□□□□ 0.76
CLN3-259ENST00000637551 ADH1AP07327 375 aa19.82■□□□□ 0.76
CLN3-259ENST00000637551 FGFR3P22607 806 aa19.82■□□□□ 0.76
CLN3-259ENST00000637551 NRIP1P48552 1158 aa19.82■□□□□ 0.76
CLN3-259ENST00000637551 ACOT2P49753 483 aa19.82■□□□□ 0.76
CLN3-259ENST00000637551 ZBTB41Q5SVQ8 909 aa19.82■□□□□ 0.76
CLN3-259ENST00000637551 KIAA1841Q6NSI8 718 aa19.82■□□□□ 0.76
CLN3-259ENST00000637551 FOXR2Q6PJQ5 311 aa19.82■□□□□ 0.76
CLN3-259ENST00000637551 RTL10Q7L3V2 364 aa19.82■□□□□ 0.76
CLN3-259ENST00000637551 XXYLT1Q8NBI6 393 aa19.82■□□□□ 0.76
CLN3-259ENST00000637551 CACTINQ8WUQ7 758 aaKnown RBP19.82■□□□□ 0.76
CLN3-259ENST00000637551 CASP10Q92851 521 aa19.82■□□□□ 0.76
CLN3-259ENST00000637551 KHSRPQ92945 711 aaKnown RBP eCLIP19.82■□□□□ 0.76
CLN3-259ENST00000637551 HPS3Q969F9 1004 aa19.82■□□□□ 0.76
CLN3-259ENST00000637551 GBP4Q96PP9 640 aa19.82■□□□□ 0.76
CLN3-259ENST00000637551 PAAF1Q9BRP4 392 aa19.82■□□□□ 0.76
CLN3-259ENST00000637551 TTPALQ9BTX7 342 aa19.82■□□□□ 0.76
CLN3-259ENST00000637551 RHOBTB2Q9BYZ6 727 aa19.82■□□□□ 0.76
CLN3-259ENST00000637551 GPR62Q9BZJ7 368 aa19.82■□□□□ 0.76
CLN3-259ENST00000637551 CXCL16Q9H2A7 254 aa19.82■□□□□ 0.76
CLN3-259ENST00000637551 KCTD10Q9H3F6 313 aa19.82■□□□□ 0.76
CLN3-259ENST00000637551 DZANK1Q9NVP4 752 aa19.82■□□□□ 0.76
CLN3-259ENST00000637551 RBAKQ9NYW8 714 aaPredicted RBP19.82■□□□□ 0.76
CLN3-259ENST00000637551 MTCL1Q9Y4B5 1905 aaKnown RBP19.81■□□□□ 0.76
CLN3-259ENST00000637551 HIDE1A8MVS5 230 aa19.81■□□□□ 0.76
CLN3-259ENST00000637551 PAPLNO95428 1278 aa19.81■□□□□ 0.76
CLN3-259ENST00000637551 SEZ6Q53EL9 994 aa19.81■□□□□ 0.76
CLN3-259ENST00000637551 ANKS3Q6ZW76 656 aa19.81■□□□□ 0.76
CLN3-259ENST00000637551 ADGRD2Q7Z7M1 963 aa19.81■□□□□ 0.76
CLN3-259ENST00000637551 SUSD3Q96L08 255 aa19.81■□□□□ 0.76
CLN3-259ENST00000637551 FAM213AQ9BRX8 229 aa19.81■□□□□ 0.76
CLN3-259ENST00000637551 TSHZ2Q9NRE2 1034 aa19.81■□□□□ 0.76
CLN3-259ENST00000637551 ANO9A1A5B4 782 aa19.8■□□□□ 0.76
CLN3-259ENST00000637551 PRR29P0C7W0 189 aa19.8■□□□□ 0.76
CLN3-259ENST00000637551 PNPLA4P41247 253 aa19.8■□□□□ 0.76
CLN3-259ENST00000637551 NDUFV1P49821 464 aa19.8■□□□□ 0.76
CLN3-259ENST00000637551 ZNF658Q5TYW1 1059 aaPredicted RBP19.8■□□□□ 0.76
CLN3-259ENST00000637551 JADE1Q6IE81 842 aa19.8■□□□□ 0.76
CLN3-259ENST00000637551 SMARCE1Q969G3 411 aa19.8■□□□□ 0.76
CLN3-259ENST00000637551 DMAC2Q9NW81 257 aa19.8■□□□□ 0.76
CLN3-259ENST00000637551 CLDND1Q9NY35 253 aa19.8■□□□□ 0.76
CLN3-259ENST00000637551 BACE2Q9Y5Z0 518 aa19.8■□□□□ 0.76
CLN3-259ENST00000637551 FAM86C2PA6NEL3 165 aa19.79■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms