RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 TNFAIP3P21580 790 aa18.13■□□□□ 0.49
CLN3-252ENST00000636907 AXLP30530 894 aa18.13■□□□□ 0.49
CLN3-252ENST00000636907 GRK4P32298 578 aa18.13■□□□□ 0.49
CLN3-252ENST00000636907 MYL6P60660 151 aa18.13■□□□□ 0.49
CLN3-252ENST00000636907 TRPC3Q13507 836 aa18.13■□□□□ 0.49
CLN3-252ENST00000636907 APBB1IPQ7Z5R6 666 aaPredicted RBP18.13■□□□□ 0.49
CLN3-252ENST00000636907 SLC47A2Q86VL8 602 aa18.13■□□□□ 0.49
CLN3-252ENST00000636907 DNAAF5Q86Y56 855 aa18.13■□□□□ 0.49
CLN3-252ENST00000636907 SECISBP2LQ93073 1101 aaKnown RBP18.13■□□□□ 0.49
CLN3-252ENST00000636907 IMPG2Q9BZV3 1241 aa18.13■□□□□ 0.49
CLN3-252ENST00000636907 ACP6Q9NPH0 428 aa18.13■□□□□ 0.49
CLN3-252ENST00000636907 PIN4Q9Y237 131 aaKnown RBP18.13■□□□□ 0.49
CLN3-252ENST00000636907 TRPV2Q9Y5S1 764 aa18.13■□□□□ 0.49
CLN3-252ENST00000636907 PTCH2Q9Y6C5 1203 aa18.13■□□□□ 0.49
CLN3-252ENST00000636907 CDY2AQ9Y6F7 541 aa18.13■□□□□ 0.49
CLN3-252ENST00000636907 HTTP42858 3142 aa18.13■□□□□ 0.49
CLN3-252ENST00000636907 KRT5P13647 590 aa18.12■□□□□ 0.49
CLN3-252ENST00000636907 NOP9Q86U38 636 aaKnown RBP18.12■□□□□ 0.49
CLN3-252ENST00000636907 RSPH3Q86UC2 560 aa18.12■□□□□ 0.49
CLN3-252ENST00000636907 TMEM130Q8N3G9 435 aa18.12■□□□□ 0.49
CLN3-252ENST00000636907 EPS8L1Q8TE68 723 aa18.12■□□□□ 0.49
CLN3-252ENST00000636907 CCDC94Q9BW85 323 aaPredicted RBP18.12■□□□□ 0.49
CLN3-252ENST00000636907 HMX1Q9NP08 348 aaPredicted RBP18.12■□□□□ 0.49
CLN3-252ENST00000636907 SNTG2Q9NY99 539 aa18.12■□□□□ 0.49
CLN3-252ENST00000636907 SALL4Q9UJQ4 1053 aa18.12■□□□□ 0.49
CLN3-252ENST00000636907 NOCTQ9UK39 431 aaKnown RBP18.12■□□□□ 0.49
CLN3-252ENST00000636907 TRIM17Q9Y577 477 aa18.12■□□□□ 0.49
CLN3-252ENST00000636907 M0QZ92 97 aa18.12■□□□□ 0.49
CLN3-252ENST00000636907 ACO1P21399 889 aaKnown RBP18.12■□□□□ 0.49
CLN3-252ENST00000636907 ACLYP53396 1101 aa18.12■□□□□ 0.49
CLN3-252ENST00000636907 PTGISQ16647 500 aa18.12■□□□□ 0.49
CLN3-252ENST00000636907 SGSM1Q2NKQ1 1148 aa18.12■□□□□ 0.49
CLN3-252ENST00000636907 LHX8Q68G74 356 aa18.12■□□□□ 0.49
CLN3-252ENST00000636907 FAM228AQ86W67 206 aa18.12■□□□□ 0.49
CLN3-252ENST00000636907 PALB2Q86YC2 1186 aa18.12■□□□□ 0.49
CLN3-252ENST00000636907 RPUSD2Q8IZ73 545 aaKnown RBP18.12■□□□□ 0.49
CLN3-252ENST00000636907 C1orf127Q8N9H9 656 aa18.12■□□□□ 0.49
CLN3-252ENST00000636907 MYRIPQ8NFW9 859 aa18.12■□□□□ 0.49
CLN3-252ENST00000636907 L2HGDHQ9H9P8 463 aa18.12■□□□□ 0.49
CLN3-252ENST00000636907 SEPT11Q9NVA2 429 aaKnown RBP18.12■□□□□ 0.49
CLN3-252ENST00000636907 SIX4Q9UIU6 781 aa18.12■□□□□ 0.49
CLN3-252ENST00000636907 NOC2LQ9Y3T9 749 aaKnown RBP18.12■□□□□ 0.49
CLN3-252ENST00000636907 CABYRO75952 493 aa18.11■□□□□ 0.49
CLN3-252ENST00000636907 URI1O94763 535 aaPredicted RBP18.11■□□□□ 0.49
CLN3-252ENST00000636907 MOCS3O95396 460 aa18.11■□□□□ 0.49
CLN3-252ENST00000636907 CTSHP09668 335 aa18.11■□□□□ 0.49
CLN3-252ENST00000636907 CYP11B1P15538 503 aa18.11■□□□□ 0.49
CLN3-252ENST00000636907 CHRNB2P17787 502 aa18.11■□□□□ 0.49
CLN3-252ENST00000636907 TBXAS1P24557 533 aaPredicted RBP18.11■□□□□ 0.49
CLN3-252ENST00000636907 TERF1P54274 439 aa18.11■□□□□ 0.49
CLN3-252ENST00000636907 ITGA7Q13683 1181 aa18.11■□□□□ 0.49
CLN3-252ENST00000636907 TMEM132DQ14C87 1099 aa18.11■□□□□ 0.49
CLN3-252ENST00000636907 XYLT2Q9H1B5 865 aa18.11■□□□□ 0.49
CLN3-252ENST00000636907 CAPN6Q9Y6Q1 641 aa18.11■□□□□ 0.49
CLN3-252ENST00000636907 CTAGE9A4FU28 777 aa18.1■□□□□ 0.49
CLN3-252ENST00000636907 TMCO5BA8MYB1 307 aa18.1■□□□□ 0.49
CLN3-252ENST00000636907 CHRNA1P02708 482 aa18.1■□□□□ 0.49
CLN3-252ENST00000636907 UBXN11Q5T124 520 aa18.1■□□□□ 0.49
CLN3-252ENST00000636907 TAF3Q5VWG9 929 aa18.1■□□□□ 0.49
CLN3-252ENST00000636907 RPAINQ86UA6 219 aa18.1■□□□□ 0.49
CLN3-252ENST00000636907 CD302Q8IX05 232 aa18.1■□□□□ 0.49
CLN3-252ENST00000636907 NAPGQ99747 312 aaPredicted RBP18.1■□□□□ 0.49
CLN3-252ENST00000636907 TRIM6Q9C030 488 aaPredicted RBP18.1■□□□□ 0.49
CLN3-252ENST00000636907 SENP6Q9GZR1 1112 aaPredicted RBP18.1■□□□□ 0.49
CLN3-252ENST00000636907 CXCL16Q9H2A7 254 aa18.1■□□□□ 0.49
CLN3-252ENST00000636907 NXF3Q9H4D5 531 aaKnown RBP18.1■□□□□ 0.49
CLN3-252ENST00000636907 C2CD2Q9Y426 696 aa18.1■□□□□ 0.49
CLN3-252ENST00000636907 HES2Q9Y543 173 aa18.1■□□□□ 0.49
CLN3-252ENST00000636907 ATP8B3O60423 1300 aa18.1■□□□□ 0.49
CLN3-252ENST00000636907 RALGAPA2Q2PPJ7 1873 aa18.1■□□□□ 0.49
CLN3-252ENST00000636907 MOXD2PA6NHM9 499 aa18.09■□□□□ 0.49
CLN3-252ENST00000636907 BUB1O43683 1085 aa18.09■□□□□ 0.49
CLN3-252ENST00000636907 ITGB3P05106 788 aa18.09■□□□□ 0.49
CLN3-252ENST00000636907 KRT19P08727 400 aa18.09■□□□□ 0.49
CLN3-252ENST00000636907 H2AFZP0C0S5 128 aa18.09■□□□□ 0.49
CLN3-252ENST00000636907 PDE6CP51160 858 aa18.09■□□□□ 0.49
CLN3-252ENST00000636907 MGAT3Q09327 533 aa18.09■□□□□ 0.49
CLN3-252ENST00000636907 ZNF699Q32M78 642 aa18.09■□□□□ 0.49
CLN3-252ENST00000636907 H2AFVQ71UI9 128 aa18.09■□□□□ 0.49
CLN3-252ENST00000636907 UBR7Q8N806 425 aa18.09■□□□□ 0.49
CLN3-252ENST00000636907 CXorf38Q8TB03 319 aa18.09■□□□□ 0.49
CLN3-252ENST00000636907 SNX27Q96L92 541 aa18.09■□□□□ 0.49
CLN3-252ENST00000636907 PCDHB18PQ96TA0 734 aa18.09■□□□□ 0.49
CLN3-252ENST00000636907 NIF3L1Q9GZT8 377 aa18.09■□□□□ 0.49
CLN3-252ENST00000636907 TAS2R14Q9NYV8 317 aa18.09■□□□□ 0.49
CLN3-252ENST00000636907 PCDHB4Q9Y5E5 795 aa18.09■□□□□ 0.49
CLN3-252ENST00000636907 CITO14578 2027 aa18.09■□□□□ 0.49
CLN3-252ENST00000636907 FRMPD3Q5JV73 1810 aa18.09■□□□□ 0.49
CLN3-252ENST00000636907 BTNL10A8MVZ5 291 aa18.09■□□□□ 0.49
CLN3-252ENST00000636907 TACC1O75410 805 aa18.09■□□□□ 0.49
CLN3-252ENST00000636907 CALCAP01258 141 aa18.09■□□□□ 0.49
CLN3-252ENST00000636907 RPLP2P05387 115 aaKnown RBP18.09■□□□□ 0.49
CLN3-252ENST00000636907 MMEP08473 750 aa18.09■□□□□ 0.49
CLN3-252ENST00000636907 GUCY2FP51841 1108 aa18.09■□□□□ 0.49
CLN3-252ENST00000636907 GALCP54803 685 aa18.09■□□□□ 0.49
CLN3-252ENST00000636907 FMO1Q01740 532 aa18.09■□□□□ 0.49
CLN3-252ENST00000636907 CDR2Q01850 454 aa18.09■□□□□ 0.49
CLN3-252ENST00000636907 NT5DC4Q86YG4 428 aa18.09■□□□□ 0.49
CLN3-252ENST00000636907 RNF10Q8N5U6 811 aaKnown RBP18.09■□□□□ 0.49
CLN3-252ENST00000636907 TRIM58Q8NG06 486 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms