RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 GTF3C4Q9UKN8 822 aa16.76■□□□□ 0.27
CLN3-251ENST00000636853 NFU1Q9UMS0 254 aa16.76■□□□□ 0.27
CLN3-251ENST00000636853 NR2E1Q9Y466 385 aa16.76■□□□□ 0.27
CLN3-251ENST00000636853 UNCXA6NJT0 531 aa16.75■□□□□ 0.27
CLN3-251ENST00000636853 SART1O43290 800 aaKnown RBP16.75■□□□□ 0.27
CLN3-251ENST00000636853 MTA2O94776 668 aa16.75■□□□□ 0.27
CLN3-251ENST00000636853 SNAI1O95863 264 aaPredicted RBP16.75■□□□□ 0.27
CLN3-251ENST00000636853 CFHP08603 1231 aa16.75■□□□□ 0.27
CLN3-251ENST00000636853 IQCF3P0C7M6 154 aa16.75■□□□□ 0.27
CLN3-251ENST00000636853 UNGP13051 313 aaPredicted RBP16.75■□□□□ 0.27
CLN3-251ENST00000636853 TNFRSF8P28908 595 aa16.75■□□□□ 0.27
CLN3-251ENST00000636853 GCLCP48506 637 aaPredicted RBP16.75■□□□□ 0.27
CLN3-251ENST00000636853 EPHB4P54760 987 aa16.75■□□□□ 0.27
CLN3-251ENST00000636853 ATF7IP2Q5U623 682 aa16.75■□□□□ 0.27
CLN3-251ENST00000636853 EEF1DP3Q658K8 133 aa16.75■□□□□ 0.27
CLN3-251ENST00000636853 ANKRD23Q86SG2 305 aa16.75■□□□□ 0.27
CLN3-251ENST00000636853 PHLDB2Q86SQ0 1253 aa16.75■□□□□ 0.27
CLN3-251ENST00000636853 WDR49Q8IV35 697 aa16.75■□□□□ 0.27
CLN3-251ENST00000636853 CEP120Q8N960 986 aa16.75■□□□□ 0.27
CLN3-251ENST00000636853 KATNBL1Q9H079 304 aa16.75■□□□□ 0.27
CLN3-251ENST00000636853 CARD9Q9H257 536 aa16.75■□□□□ 0.27
CLN3-251ENST00000636853 ACBD3Q9H3P7 528 aa16.75■□□□□ 0.27
CLN3-251ENST00000636853 FZD8Q9H461 694 aa16.75■□□□□ 0.27
CLN3-251ENST00000636853 MORF4L1Q9UBU8 362 aa16.75■□□□□ 0.27
CLN3-251ENST00000636853 CNOT8Q9UFF9 292 aaKnown RBP16.75■□□□□ 0.27
CLN3-251ENST00000636853 CPSF3Q9UKF6 684 aaKnown RBP16.75■□□□□ 0.27
CLN3-251ENST00000636853 ACKR2O00590 384 aa16.75■□□□□ 0.27
CLN3-251ENST00000636853 PTENP60484 403 aa16.75■□□□□ 0.27
CLN3-251ENST00000636853 MBTD1Q05BQ5 628 aa16.75■□□□□ 0.27
CLN3-251ENST00000636853 ZNF568Q3ZCX4 644 aa16.75■□□□□ 0.27
CLN3-251ENST00000636853 C2CD6Q53TS8 623 aa16.75■□□□□ 0.27
CLN3-251ENST00000636853 MPZL3Q6UWV2 235 aa16.75■□□□□ 0.27
CLN3-251ENST00000636853 TSHZ1Q6ZSZ6 1077 aa16.75■□□□□ 0.27
CLN3-251ENST00000636853 GPR142Q7Z601 462 aa16.75■□□□□ 0.27
CLN3-251ENST00000636853 DPP9Q86TI2 863 aa16.75■□□□□ 0.27
CLN3-251ENST00000636853 PTPN18Q99952 460 aa16.75■□□□□ 0.27
CLN3-251ENST00000636853 PTPRHQ9HD43 1115 aa16.75■□□□□ 0.27
CLN3-251ENST00000636853 ERICH4A6NGS2 130 aa16.74■□□□□ 0.27
CLN3-251ENST00000636853 STRNO43815 780 aa16.74■□□□□ 0.27
CLN3-251ENST00000636853 CELF2O95319 508 aaKnown RBP16.74■□□□□ 0.27
CLN3-251ENST00000636853 PROZP22891 400 aa16.74■□□□□ 0.27
CLN3-251ENST00000636853 HNRNPH2P55795 449 aaKnown RBP16.74■□□□□ 0.27
CLN3-251ENST00000636853 BPIFB4P59827 614 aa16.74■□□□□ 0.27
CLN3-251ENST00000636853 PASD1Q8IV76 773 aa16.74■□□□□ 0.27
CLN3-251ENST00000636853 CYFIP2Q96F07 1278 aa16.74■□□□□ 0.27
CLN3-251ENST00000636853 PSD3Q9NYI0 1048 aa16.74■□□□□ 0.27
CLN3-251ENST00000636853 AMACRQ9UHK6 382 aa16.74■□□□□ 0.27
CLN3-251ENST00000636853 TTC7AQ9ULT0 858 aaPredicted RBP16.74■□□□□ 0.27
CLN3-251ENST00000636853 CCDC188H7C350 402 aa16.73■□□□□ 0.27
CLN3-251ENST00000636853 FAM153BP0C7A2 387 aa16.73■□□□□ 0.27
CLN3-251ENST00000636853 MYL6P60660 151 aa16.73■□□□□ 0.27
CLN3-251ENST00000636853 TFAMQ00059 246 aaKnown RBP16.73■□□□□ 0.27
CLN3-251ENST00000636853 FAM153CQ494X1 144 aa16.73■□□□□ 0.27
CLN3-251ENST00000636853 ZNF484Q5JVG2 852 aa16.73■□□□□ 0.27
CLN3-251ENST00000636853 LLGL2Q6P1M3 1020 aa16.73■□□□□ 0.27
CLN3-251ENST00000636853 ZNF677Q86XU0 584 aa16.73■□□□□ 0.27
CLN3-251ENST00000636853 ABRAQ8N0Z2 381 aa16.73■□□□□ 0.27
CLN3-251ENST00000636853 RBBP8NLQ8NC74 664 aaPredicted RBP16.73■□□□□ 0.27
CLN3-251ENST00000636853 PPTC7Q8NI37 304 aa16.73■□□□□ 0.27
CLN3-251ENST00000636853 IMPG2Q9BZV3 1241 aa16.73■□□□□ 0.27
CLN3-251ENST00000636853 IFT122Q9HBG6 1241 aa16.73■□□□□ 0.27
CLN3-251ENST00000636853 FAM153AQ9UHL3 310 aa16.73■□□□□ 0.27
CLN3-251ENST00000636853 MGAMO43451 1857 aa16.73■□□□□ 0.27
CLN3-251ENST00000636853 RBM47A0AV96 593 aaKnown RBP16.73■□□□□ 0.27
CLN3-251ENST00000636853 TBXAS1P24557 533 aaPredicted RBP16.73■□□□□ 0.27
CLN3-251ENST00000636853 GNA15P30679 374 aa16.73■□□□□ 0.27
CLN3-251ENST00000636853 GRM1Q13255 1194 aa16.73■□□□□ 0.27
CLN3-251ENST00000636853 HSP90B2PQ58FF3 399 aa16.73■□□□□ 0.27
CLN3-251ENST00000636853 SPRYD7Q5W111 196 aa16.73■□□□□ 0.27
CLN3-251ENST00000636853 EMBQ6PCB8 327 aa16.73■□□□□ 0.27
CLN3-251ENST00000636853 TMEM192Q8IY95 271 aa16.73■□□□□ 0.27
CLN3-251ENST00000636853 MCOLN2Q8IZK6 566 aa16.73■□□□□ 0.27
CLN3-251ENST00000636853 UBL4BQ8N7F7 174 aa16.73■□□□□ 0.27
CLN3-251ENST00000636853 RIN2Q8WYP3 895 aaPredicted RBP16.73■□□□□ 0.27
CLN3-251ENST00000636853 RPS6KC1Q96S38 1066 aa16.73■□□□□ 0.27
CLN3-251ENST00000636853 ZSWIM1Q9BR11 485 aa16.73■□□□□ 0.27
CLN3-251ENST00000636853 VPS18Q9P253 973 aa16.73■□□□□ 0.27
CLN3-251ENST00000636853 UVRAGQ9P2Y5 699 aa16.73■□□□□ 0.27
CLN3-251ENST00000636853 FAN1Q9Y2M0 1017 aa16.73■□□□□ 0.27
CLN3-251ENST00000636853 A0A087WZ62 844 aa16.72■□□□□ 0.27
CLN3-251ENST00000636853 MIF4GDA9UHW6 222 aaKnown RBP16.72■□□□□ 0.27
CLN3-251ENST00000636853 ASAP2O43150 1006 aa16.72■□□□□ 0.27
CLN3-251ENST00000636853 SPOPO43791 374 aa16.72■□□□□ 0.27
CLN3-251ENST00000636853 ASS1P00966 412 aaKnown RBP16.72■□□□□ 0.27
CLN3-251ENST00000636853 AP3M2P53677 418 aa16.72■□□□□ 0.27
CLN3-251ENST00000636853 PAK2Q13177 524 aa16.72■□□□□ 0.27
CLN3-251ENST00000636853 DUOXA2Q1HG44 320 aa16.72■□□□□ 0.27
CLN3-251ENST00000636853 EFCAB13Q8IY85 973 aa16.72■□□□□ 0.27
CLN3-251ENST00000636853 C2orf69Q8N8R5 385 aa16.72■□□□□ 0.27
CLN3-251ENST00000636853 TSEN2Q8NCE0 465 aaKnown RBP16.72■□□□□ 0.27
CLN3-251ENST00000636853 MAML3Q96JK9 1138 aa16.72■□□□□ 0.27
CLN3-251ENST00000636853 FDXACB1Q9BRP7 624 aaPredicted RBP16.72■□□□□ 0.27
CLN3-251ENST00000636853 C16orf70Q9BSU1 422 aa16.72■□□□□ 0.27
CLN3-251ENST00000636853 TRIM7Q9C029 511 aa16.72■□□□□ 0.27
CLN3-251ENST00000636853 CDT1Q9H211 546 aa16.72■□□□□ 0.27
CLN3-251ENST00000636853 RRAGCQ9HB90 399 aa16.72■□□□□ 0.27
CLN3-251ENST00000636853 AKT3Q9Y243 479 aa16.72■□□□□ 0.27
CLN3-251ENST00000636853 SYF2O95926 243 aaKnown RBP16.72■□□□□ 0.27
CLN3-251ENST00000636853 VTNP04004 478 aa16.72■□□□□ 0.27
CLN3-251ENST00000636853 CYP1A1P04798 512 aaPredicted RBP16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms