RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 GPD1P21695 349 aa4.16□□□□□ -1.74
SCN1A-208ENST00000625916 FOLR3P41439 243 aa4.16□□□□□ -1.74
SCN1A-208ENST00000625916 KRTAP10-9P60411 292 aa4.16□□□□□ -1.74
SCN1A-208ENST00000625916 MRPS9P82933 396 aaKnown RBP4.16□□□□□ -1.74
SCN1A-208ENST00000625916 NOMO1Q15155 1222 aa4.16□□□□□ -1.74
SCN1A-208ENST00000625916 SF3B3Q15393 1217 aaKnown RBP4.16□□□□□ -1.74
SCN1A-208ENST00000625916 TGFBRAP1Q8WUH2 860 aa4.16□□□□□ -1.74
SCN1A-208ENST00000625916 ZNF778Q96MU6 729 aa4.16□□□□□ -1.74
SCN1A-208ENST00000625916 MYOCQ99972 504 aa4.16□□□□□ -1.74
SCN1A-208ENST00000625916 ADI1Q9BV57 179 aa4.16□□□□□ -1.74
SCN1A-208ENST00000625916 ACE2Q9BYF1 805 aaPredicted RBP4.16□□□□□ -1.74
SCN1A-208ENST00000625916 IFT22Q9H7X7 185 aa4.16□□□□□ -1.74
SCN1A-208ENST00000625916 IFT122Q9HBG6 1241 aa4.16□□□□□ -1.74
SCN1A-208ENST00000625916 ACTL7AQ9Y615 435 aa4.16□□□□□ -1.74
SCN1A-208ENST00000625916 CCDC151A5D8V7 595 aa4.15□□□□□ -1.75
SCN1A-208ENST00000625916 CGB1A6NKQ9 187 aa4.15□□□□□ -1.75
SCN1A-208ENST00000625916 GOLGA8AA7E2F4 631 aa4.15□□□□□ -1.75
SCN1A-208ENST00000625916 PDE8AO60658 829 aa4.15□□□□□ -1.75
SCN1A-208ENST00000625916 ENDOD1O94919 500 aa4.15□□□□□ -1.75
SCN1A-208ENST00000625916 MYCLP1P12525 358 aaPredicted RBP4.15□□□□□ -1.75
SCN1A-208ENST00000625916 MTHFD2P13995 350 aa4.15□□□□□ -1.75
SCN1A-208ENST00000625916 BPIP17213 487 aa4.15□□□□□ -1.75
SCN1A-208ENST00000625916 GUCY1A2P33402 732 aa4.15□□□□□ -1.75
SCN1A-208ENST00000625916 PROK1P58294 105 aa4.15□□□□□ -1.75
SCN1A-208ENST00000625916 MUM1Q2TAK8 710 aa4.15□□□□□ -1.75
SCN1A-208ENST00000625916 KAZNQ674X7 775 aa4.15□□□□□ -1.75
SCN1A-208ENST00000625916 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP4.15□□□□□ -1.75
SCN1A-208ENST00000625916 SEM1Q6ZVN7 128 aa4.15□□□□□ -1.75
SCN1A-208ENST00000625916 PTF1AQ7RTS3 328 aa4.15□□□□□ -1.75
SCN1A-208ENST00000625916 FITM2Q8N6M3 262 aa4.15□□□□□ -1.75
SCN1A-208ENST00000625916 NUP133Q8WUM0 1156 aa4.15□□□□□ -1.75
SCN1A-208ENST00000625916 CASKIN2Q8WXE0 1202 aa4.15□□□□□ -1.75
SCN1A-208ENST00000625916 MED15Q96RN5 788 aa4.15□□□□□ -1.75
SCN1A-208ENST00000625916 DMRT3Q9NQL9 472 aa4.15□□□□□ -1.75
SCN1A-208ENST00000625916 HSFX1Q9UBD0 423 aa4.15□□□□□ -1.75
SCN1A-208ENST00000625916 SLC23A1Q9UHI7 598 aa4.15□□□□□ -1.75
SCN1A-208ENST00000625916 RUVBL1Q9Y265 456 aaKnown RBP4.15□□□□□ -1.75
SCN1A-208ENST00000625916 WDR91A4D1P6 747 aa4.14□□□□□ -1.75
SCN1A-208ENST00000625916 CDHR4A6H8M9 788 aa4.14□□□□□ -1.75
SCN1A-208ENST00000625916 NEMP1O14524 444 aa4.14□□□□□ -1.75
SCN1A-208ENST00000625916 ZEB2O60315 1214 aa4.14□□□□□ -1.75
SCN1A-208ENST00000625916 ZFPL1O95159 310 aa4.14□□□□□ -1.75
SCN1A-208ENST00000625916 CTGFP29279 349 aa4.14□□□□□ -1.75
SCN1A-208ENST00000625916 ID4P47928 161 aa4.14□□□□□ -1.75
SCN1A-208ENST00000625916 NOMO3P69849 1222 aa4.14□□□□□ -1.75
SCN1A-208ENST00000625916 EXOSC10Q01780 885 aaKnown RBP4.14□□□□□ -1.75
SCN1A-208ENST00000625916 DHCR24Q15392 516 aa4.14□□□□□ -1.75
SCN1A-208ENST00000625916 NOMO2Q5JPE7 1267 aa4.14□□□□□ -1.75
SCN1A-208ENST00000625916 TSTD2Q5T7W7 516 aa4.14□□□□□ -1.75
SCN1A-208ENST00000625916 C1QL2Q7Z5L3 287 aa4.14□□□□□ -1.75
SCN1A-208ENST00000625916 ZNF366Q8N895 744 aa4.14□□□□□ -1.75
SCN1A-208ENST00000625916 TBC1D15Q8TC07 691 aa4.14□□□□□ -1.75
SCN1A-208ENST00000625916 DDB2Q92466 427 aa4.14□□□□□ -1.75
SCN1A-208ENST00000625916 FBXL20Q96IG2 436 aa4.14□□□□□ -1.75
SCN1A-208ENST00000625916 TTC1Q99614 292 aa4.14□□□□□ -1.75
SCN1A-208ENST00000625916 C1QTNF7Q9BXJ2 289 aa4.14□□□□□ -1.75
SCN1A-208ENST00000625916 GSTO2Q9H4Y5 243 aa4.14□□□□□ -1.75
SCN1A-208ENST00000625916 SCOCQ9UIL1 159 aa4.14□□□□□ -1.75
SCN1A-208ENST00000625916 MAPRE3Q9UPY8 281 aa4.14□□□□□ -1.75
SCN1A-208ENST00000625916 ENTPD2Q9Y5L3 495 aa4.14□□□□□ -1.75
SCN1A-208ENST00000625916 SETD1BQ9UPS6 1966 aaKnown RBP4.14□□□□□ -1.75
SCN1A-208ENST00000625916 TCRBV7S2A1N4TA0A589 114 aa4.13□□□□□ -1.75
SCN1A-208ENST00000625916 MANSC4A6NHS7 340 aaPredicted RBP4.13□□□□□ -1.75
SCN1A-208ENST00000625916 KIAA0391O15091 583 aaKnown RBP4.13□□□□□ -1.75
SCN1A-208ENST00000625916 GPR32O75388 356 aa4.13□□□□□ -1.75
SCN1A-208ENST00000625916 GSPT1P15170 499 aaKnown RBP4.13□□□□□ -1.75
SCN1A-208ENST00000625916 PCSK1P29120 753 aa4.13□□□□□ -1.75
SCN1A-208ENST00000625916 MAPK10P53779 464 aa4.13□□□□□ -1.75
SCN1A-208ENST00000625916 PPP3CAQ08209 521 aa4.13□□□□□ -1.75
SCN1A-208ENST00000625916 SRSF7Q16629 238 aaKnown RBP eCLIP4.13□□□□□ -1.75
SCN1A-208ENST00000625916 TOR2AQ5JU69 321 aa4.13□□□□□ -1.75
SCN1A-208ENST00000625916 KIAA1614Q5VZ46 1190 aa4.13□□□□□ -1.75
SCN1A-208ENST00000625916 PEG10Q86TG7 708 aaKnown RBP4.13□□□□□ -1.75
SCN1A-208ENST00000625916 CCHCR1Q8TD31 782 aa4.13□□□□□ -1.75
SCN1A-208ENST00000625916 TFAP2BQ92481 460 aa4.13□□□□□ -1.75
SCN1A-208ENST00000625916 UBXN4Q92575 508 aa4.13□□□□□ -1.75
SCN1A-208ENST00000625916 HOXB13Q92826 284 aaPredicted RBP4.13□□□□□ -1.75
SCN1A-208ENST00000625916 TMEM125Q96AQ2 219 aa4.13□□□□□ -1.75
SCN1A-208ENST00000625916 SARAFQ96BY9 339 aa4.13□□□□□ -1.75
SCN1A-208ENST00000625916 TIMP4Q99727 224 aa4.13□□□□□ -1.75
SCN1A-208ENST00000625916 ZNF70Q9UC06 446 aaPredicted RBP4.13□□□□□ -1.75
SCN1A-208ENST00000625916 A0A087X0B3 334 aa4.12□□□□□ -1.75
SCN1A-208ENST00000625916 MPPED1O15442 326 aa4.12□□□□□ -1.75
SCN1A-208ENST00000625916 GRIA3P42263 894 aa4.12□□□□□ -1.75
SCN1A-208ENST00000625916 SCAND1P57086 179 aa4.12□□□□□ -1.75
SCN1A-208ENST00000625916 CREMQ03060 361 aa4.12□□□□□ -1.75
SCN1A-208ENST00000625916 MALLQ13021 153 aa4.12□□□□□ -1.75
SCN1A-208ENST00000625916 STRN3Q13033 797 aa4.12□□□□□ -1.75
SCN1A-208ENST00000625916 EZH2Q15910 746 aaKnown RBP4.12□□□□□ -1.75
SCN1A-208ENST00000625916 ANO4Q32M45 955 aa4.12□□□□□ -1.75
SCN1A-208ENST00000625916 VWA1Q6PCB0 445 aa4.12□□□□□ -1.75
SCN1A-208ENST00000625916 DDX46Q7L014 1031 aaKnown RBP4.12□□□□□ -1.75
SCN1A-208ENST00000625916 AMIGO2Q86SJ2 522 aa4.12□□□□□ -1.75
SCN1A-208ENST00000625916 CMIPQ8IY22 773 aa4.12□□□□□ -1.75
SCN1A-208ENST00000625916 HASPINQ8TF76 798 aa4.12□□□□□ -1.75
SCN1A-208ENST00000625916 CYFIP2Q96F07 1278 aa4.12□□□□□ -1.75
SCN1A-208ENST00000625916 DRC1Q96MC2 740 aa4.12□□□□□ -1.75
SCN1A-208ENST00000625916 APOBEC2Q9Y235 224 aaKnown RBP4.12□□□□□ -1.75
SCN1A-208ENST00000625916 MRPL42Q9Y6G3 142 aaKnown RBP4.12□□□□□ -1.75
SCN1A-208ENST00000625916 IKBKBO14920 756 aa4.11□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms