RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 PPP2R3AQ06190 1150 aa17.42■□□□□ 0.38
BRCA1-228ENST00000618469 SLC10A6Q3KNW5 377 aa17.42■□□□□ 0.38
BRCA1-228ENST00000618469 PPFIBP1Q86W92 1011 aa17.42■□□□□ 0.38
BRCA1-228ENST00000618469 TMEM105Q8N8V8 129 aa17.42■□□□□ 0.38
BRCA1-228ENST00000618469 RIN2Q8WYP3 895 aaPredicted RBP17.42■□□□□ 0.38
BRCA1-228ENST00000618469 C18orf25Q96B23 403 aaPredicted RBP17.42■□□□□ 0.38
BRCA1-228ENST00000618469 FGFBP2Q9BYJ0 223 aa17.42■□□□□ 0.38
BRCA1-228ENST00000618469 S1PR5Q9H228 398 aa17.42■□□□□ 0.38
BRCA1-228ENST00000618469 IKZF4Q9H2S9 585 aa17.42■□□□□ 0.38
BRCA1-228ENST00000618469 ANK1P16157 1881 aa17.41■□□□□ 0.38
BRCA1-228ENST00000618469 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.41■□□□□ 0.38
BRCA1-228ENST00000618469 A0A0B4J269 797 aa17.41■□□□□ 0.38
BRCA1-228ENST00000618469 SPDYE4A6NLX3 237 aa17.41■□□□□ 0.38
BRCA1-228ENST00000618469 TMEM189-UBE2V1I3L0A0 370 aa17.41■□□□□ 0.38
BRCA1-228ENST00000618469 PODXLO00592 558 aa17.41■□□□□ 0.38
BRCA1-228ENST00000618469 TEX28O15482 410 aa17.41■□□□□ 0.38
BRCA1-228ENST00000618469 GALR2O43603 387 aaPredicted RBP17.41■□□□□ 0.38
BRCA1-228ENST00000618469 LILRB3O75022 631 aa17.41■□□□□ 0.38
BRCA1-228ENST00000618469 B3GAT3O94766 335 aa17.41■□□□□ 0.38
BRCA1-228ENST00000618469 ADH1AP07327 375 aa17.41■□□□□ 0.38
BRCA1-228ENST00000618469 WEE2P0C1S8 567 aa17.41■□□□□ 0.38
BRCA1-228ENST00000618469 SPAG1Q07617 926 aa17.41■□□□□ 0.38
BRCA1-228ENST00000618469 KCNA1Q09470 495 aa17.41■□□□□ 0.38
BRCA1-228ENST00000618469 ELAVL2Q12926 359 aaKnown RBP17.41■□□□□ 0.38
BRCA1-228ENST00000618469 KYAT1Q16773 422 aa17.41■□□□□ 0.38
BRCA1-228ENST00000618469 UPP1Q16831 310 aa17.41■□□□□ 0.38
BRCA1-228ENST00000618469 RTP2Q5QGT7 225 aa17.41■□□□□ 0.38
BRCA1-228ENST00000618469 L1TD1Q5T7N2 865 aaKnown RBP17.41■□□□□ 0.38
BRCA1-228ENST00000618469 FAM171A1Q5VUB5 890 aa17.41■□□□□ 0.38
BRCA1-228ENST00000618469 KIAA0319Q5VV43 1072 aa17.41■□□□□ 0.38
BRCA1-228ENST00000618469 SYCE2Q6PIF2 218 aa17.41■□□□□ 0.38
BRCA1-228ENST00000618469 C3orf58Q8NDZ4 430 aa17.41■□□□□ 0.38
BRCA1-228ENST00000618469 SLC22A17Q8WUG5 538 aa17.41■□□□□ 0.38
BRCA1-228ENST00000618469 ACCSQ96QU6 501 aa17.41■□□□□ 0.38
BRCA1-228ENST00000618469 PYM1Q9BRP8 204 aaKnown RBP17.41■□□□□ 0.38
BRCA1-228ENST00000618469 STRA6Q9BX79 667 aa17.41■□□□□ 0.38
BRCA1-228ENST00000618469 CHST7Q9NS84 486 aa17.41■□□□□ 0.38
BRCA1-228ENST00000618469 DZANK1Q9NVP4 752 aa17.41■□□□□ 0.38
BRCA1-228ENST00000618469 TUBGCP4Q9UGJ1 667 aa17.41■□□□□ 0.38
BRCA1-228ENST00000618469 KCNH3Q9ULD8 1083 aa17.41■□□□□ 0.38
BRCA1-228ENST00000618469 EXOC7Q9UPT5 735 aa17.41■□□□□ 0.38
BRCA1-228ENST00000618469 PRR23AA6NEV1 266 aa17.4■□□□□ 0.38
BRCA1-228ENST00000618469 PFKFB1P16118 471 aa17.4■□□□□ 0.38
BRCA1-228ENST00000618469 HOXB8P17481 243 aaPredicted RBP17.4■□□□□ 0.38
BRCA1-228ENST00000618469 IGFBP6P24592 240 aaPredicted RBP17.4■□□□□ 0.38
BRCA1-228ENST00000618469 CLCN4P51793 760 aa17.4■□□□□ 0.38
BRCA1-228ENST00000618469 ALCAMQ13740 583 aa17.4■□□□□ 0.38
BRCA1-228ENST00000618469 ENOX2Q16206 610 aaKnown RBP17.4■□□□□ 0.38
BRCA1-228ENST00000618469 TPRNQ4KMQ1 711 aa17.4■□□□□ 0.38
BRCA1-228ENST00000618469 ADALQ6DHV7 355 aa17.4■□□□□ 0.38
BRCA1-228ENST00000618469 PRSS55Q6UWB4 352 aaPredicted RBP17.4■□□□□ 0.38
BRCA1-228ENST00000618469 FRMD5Q7Z6J6 570 aa17.4■□□□□ 0.38
BRCA1-228ENST00000618469 CEP57Q86XR8 500 aa17.4■□□□□ 0.38
BRCA1-228ENST00000618469 GLYCTKQ8IVS8 523 aa17.4■□□□□ 0.38
BRCA1-228ENST00000618469 CEP57L1Q8IYX8 460 aa17.4■□□□□ 0.38
BRCA1-228ENST00000618469 POMGNT1Q8WZA1 660 aa17.4■□□□□ 0.38
BRCA1-228ENST00000618469 HPS3Q969F9 1004 aa17.4■□□□□ 0.38
BRCA1-228ENST00000618469 KIF12Q96FN5 646 aa17.4■□□□□ 0.38
BRCA1-228ENST00000618469 TTPALQ9BTX7 342 aa17.4■□□□□ 0.38
BRCA1-228ENST00000618469 SCAND2PQ9GZW5 306 aaPredicted RBP17.4■□□□□ 0.38
BRCA1-228ENST00000618469 RPF1Q9H9Y2 349 aaKnown RBP17.4■□□□□ 0.38
BRCA1-228ENST00000618469 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP17.4■□□□□ 0.38
BRCA1-228ENST00000618469 PCDHB13Q9Y5F0 798 aa17.4■□□□□ 0.38
BRCA1-228ENST00000618469 RIF1Q5UIP0 2472 aaKnown RBP17.39■□□□□ 0.37
BRCA1-228ENST00000618469 A0A1B0GVL5 298 aa17.39■□□□□ 0.37
BRCA1-228ENST00000618469 TTC26A0AVF1 554 aa17.39■□□□□ 0.37
BRCA1-228ENST00000618469 I3L4J1 428 aa17.39■□□□□ 0.37
BRCA1-228ENST00000618469 GLUD1P00367 558 aa17.39■□□□□ 0.37
BRCA1-228ENST00000618469 ASGR2P07307 311 aa17.39■□□□□ 0.37
BRCA1-228ENST00000618469 RPL17P18621 184 aaKnown RBP17.39■□□□□ 0.37
BRCA1-228ENST00000618469 CASP1P29466 404 aa17.39■□□□□ 0.37
BRCA1-228ENST00000618469 AFMP43652 599 aa17.39■□□□□ 0.37
BRCA1-228ENST00000618469 CREMQ03060 361 aa17.39■□□□□ 0.37
BRCA1-228ENST00000618469 PSMD5Q16401 504 aa17.39■□□□□ 0.37
BRCA1-228ENST00000618469 RARS2Q5T160 578 aaKnown RBP17.39■□□□□ 0.37
BRCA1-228ENST00000618469 SLFN12LQ6IEE8 588 aa17.39■□□□□ 0.37
BRCA1-228ENST00000618469 DCLRE1AQ6PJP8 1040 aa17.39■□□□□ 0.37
BRCA1-228ENST00000618469 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.39■□□□□ 0.37
BRCA1-228ENST00000618469 GRAMD1CQ8IYS0 662 aa17.39■□□□□ 0.37
BRCA1-228ENST00000618469 SYCP3Q8IZU3 236 aa17.39■□□□□ 0.37
BRCA1-228ENST00000618469 C12orf76Q8N812 135 aaPredicted RBP17.39■□□□□ 0.37
BRCA1-228ENST00000618469 FAM212AQ96EL1 285 aa17.39■□□□□ 0.37
BRCA1-228ENST00000618469 DDX27Q96GQ7 796 aaKnown RBP17.39■□□□□ 0.37
BRCA1-228ENST00000618469 IRF2BPLQ9H1B7 796 aa17.39■□□□□ 0.37
BRCA1-228ENST00000618469 BLZF1Q9H2G9 400 aa17.39■□□□□ 0.37
BRCA1-228ENST00000618469 PLEKHA5Q9HAU0 1116 aa17.39■□□□□ 0.37
BRCA1-228ENST00000618469 RXFP1Q9HBX9 757 aa17.39■□□□□ 0.37
BRCA1-228ENST00000618469 GDPD2Q9HCC8 539 aa17.39■□□□□ 0.37
BRCA1-228ENST00000618469 MAN1C1Q9NR34 630 aa17.39■□□□□ 0.37
BRCA1-228ENST00000618469 CPSF3Q9UKF6 684 aaKnown RBP17.39■□□□□ 0.37
BRCA1-228ENST00000618469 AGO2Q9UKV8 859 aaKnown RBP17.39■□□□□ 0.37
BRCA1-228ENST00000618469 VPS13AQ96RL7 3174 aa17.39■□□□□ 0.37
BRCA1-228ENST00000618469 FAM186AA6NE01 2351 aa17.38■□□□□ 0.37
BRCA1-228ENST00000618469 LACTBL1A8MY62 500 aa17.38■□□□□ 0.37
BRCA1-228ENST00000618469 C2CD4DB7Z1M9 353 aa17.38■□□□□ 0.37
BRCA1-228ENST00000618469 PRPF6O94906 941 aaKnown RBP17.38■□□□□ 0.37
BRCA1-228ENST00000618469 CMA1P23946 247 aa17.38■□□□□ 0.37
BRCA1-228ENST00000618469 BRCC3P46736 316 aa17.38■□□□□ 0.37
BRCA1-228ENST00000618469 ACOT2P49753 483 aa17.38■□□□□ 0.37
BRCA1-228ENST00000618469 FAM26FQ5R3K3 315 aa17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms