RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 C2orf71A6NGG8 1288 aa14.64□□□□□ -0.07
LINC00540-202ENST00000616974 ADAM12O43184 909 aa14.64□□□□□ -0.07
LINC00540-202ENST00000616974 EXTL3O43909 919 aa14.64□□□□□ -0.07
LINC00540-202ENST00000616974 LTBRP36941 435 aa14.64□□□□□ -0.07
LINC00540-202ENST00000616974 PTPN14Q15678 1187 aa14.64□□□□□ -0.07
LINC00540-202ENST00000616974 CLUL1Q15846 466 aa14.64□□□□□ -0.07
LINC00540-202ENST00000616974 SNRNP35Q16560 246 aaKnown RBP14.64□□□□□ -0.07
LINC00540-202ENST00000616974 ZCWPW2Q504Y3 356 aa14.64□□□□□ -0.07
LINC00540-202ENST00000616974 CXorf38Q8TB03 319 aa14.64□□□□□ -0.07
LINC00540-202ENST00000616974 MTMR12Q9C0I1 747 aa14.64□□□□□ -0.07
LINC00540-202ENST00000616974 TIMM13Q9Y5L4 95 aaPredicted RBP14.64□□□□□ -0.07
LINC00540-202ENST00000616974 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP14.63□□□□□ -0.07
LINC00540-202ENST00000616974 H3BQ06 376 aaPredicted RBP14.63□□□□□ -0.07
LINC00540-202ENST00000616974 LRRN2O75325 713 aa14.63□□□□□ -0.07
LINC00540-202ENST00000616974 TBX10O75333 385 aa14.63□□□□□ -0.07
LINC00540-202ENST00000616974 TKTP29401 623 aaKnown RBP14.63□□□□□ -0.07
LINC00540-202ENST00000616974 PPM1AP35813 382 aa14.63□□□□□ -0.07
LINC00540-202ENST00000616974 PSMD2Q13200 908 aa14.63□□□□□ -0.07
LINC00540-202ENST00000616974 TIGD5Q53EQ6 642 aa14.63□□□□□ -0.07
LINC00540-202ENST00000616974 LLGL2Q6P1M3 1020 aa14.63□□□□□ -0.07
LINC00540-202ENST00000616974 EP400NLQ6ZTU2 488 aa14.63□□□□□ -0.07
LINC00540-202ENST00000616974 CEP57Q86XR8 500 aa14.63□□□□□ -0.07
LINC00540-202ENST00000616974 ZNF516Q92618 1163 aa14.63□□□□□ -0.07
LINC00540-202ENST00000616974 CCDC127Q96BQ5 260 aa14.63□□□□□ -0.07
LINC00540-202ENST00000616974 FBXL18Q96ME1 805 aa14.63□□□□□ -0.07
LINC00540-202ENST00000616974 GSDMAQ96QA5 445 aa14.63□□□□□ -0.07
LINC00540-202ENST00000616974 MED15Q96RN5 788 aa14.63□□□□□ -0.07
LINC00540-202ENST00000616974 MYO10Q9HD67 2058 aa14.63□□□□□ -0.07
LINC00540-202ENST00000616974 LILRB3O75022 631 aa14.63□□□□□ -0.07
LINC00540-202ENST00000616974 TADA2AO75478 443 aa14.63□□□□□ -0.07
LINC00540-202ENST00000616974 NR3C1P04150 777 aa14.63□□□□□ -0.07
LINC00540-202ENST00000616974 SCP2P22307 547 aa14.63□□□□□ -0.07
LINC00540-202ENST00000616974 TFAMQ00059 246 aaKnown RBP14.63□□□□□ -0.07
LINC00540-202ENST00000616974 MORC3Q14149 939 aa14.63□□□□□ -0.07
LINC00540-202ENST00000616974 TMEM132DQ14C87 1099 aa14.63□□□□□ -0.07
LINC00540-202ENST00000616974 ZNF658Q5TYW1 1059 aaPredicted RBP14.63□□□□□ -0.07
LINC00540-202ENST00000616974 FAM171A1Q5VUB5 890 aa14.63□□□□□ -0.07
LINC00540-202ENST00000616974 KLHL10Q6JEL2 608 aa14.63□□□□□ -0.07
LINC00540-202ENST00000616974 APBB1IPQ7Z5R6 666 aaPredicted RBP14.63□□□□□ -0.07
LINC00540-202ENST00000616974 C1orf127Q8N9H9 656 aa14.63□□□□□ -0.07
LINC00540-202ENST00000616974 NSUN3Q9H649 340 aaKnown RBP14.63□□□□□ -0.07
LINC00540-202ENST00000616974 DMAC2Q9NW81 257 aa14.63□□□□□ -0.07
LINC00540-202ENST00000616974 SIX4Q9UIU6 781 aa14.63□□□□□ -0.07
LINC00540-202ENST00000616974 BARX2Q9UMQ3 279 aaPredicted RBP14.63□□□□□ -0.07
LINC00540-202ENST00000616974 UBE4BO95155 1302 aa14.62□□□□□ -0.07
LINC00540-202ENST00000616974 PPP1R3GB7ZBB8 358 aa14.62□□□□□ -0.07
LINC00540-202ENST00000616974 AKAP3O75969 853 aa14.62□□□□□ -0.07
LINC00540-202ENST00000616974 CXCL14O95715 111 aa14.62□□□□□ -0.07
LINC00540-202ENST00000616974 SOD2P04179 222 aa14.62□□□□□ -0.07
LINC00540-202ENST00000616974 CNPP09543 421 aaKnown RBP14.62□□□□□ -0.07
LINC00540-202ENST00000616974 SPATA31D3P0C874 917 aa14.62□□□□□ -0.07
LINC00540-202ENST00000616974 DLATP10515 647 aaKnown RBP14.62□□□□□ -0.07
LINC00540-202ENST00000616974 KRT17Q04695 432 aa14.62□□□□□ -0.07
LINC00540-202ENST00000616974 SPATA1Q5VX52 437 aa14.62□□□□□ -0.07
LINC00540-202ENST00000616974 ANKRD40Q6AI12 368 aa14.62□□□□□ -0.07
LINC00540-202ENST00000616974 SPATA31D4Q6ZUB0 917 aa14.62□□□□□ -0.07
LINC00540-202ENST00000616974 STXBP4Q6ZWJ1 553 aa14.62□□□□□ -0.07
LINC00540-202ENST00000616974 GUF1Q8N442 669 aaKnown RBP14.62□□□□□ -0.07
LINC00540-202ENST00000616974 MRPL43Q8N983 215 aaKnown RBP14.62□□□□□ -0.07
LINC00540-202ENST00000616974 XXYLT1Q8NBI6 393 aa14.62□□□□□ -0.07
LINC00540-202ENST00000616974 APOL5Q9BWW9 433 aa14.62□□□□□ -0.07
LINC00540-202ENST00000616974 CLSTN2Q9H4D0 955 aa14.62□□□□□ -0.07
LINC00540-202ENST00000616974 PLEKHA5Q9HAU0 1116 aa14.62□□□□□ -0.07
LINC00540-202ENST00000616974 WDR87Q6ZQQ6 2873 aa14.62□□□□□ -0.07
LINC00540-202ENST00000616974 CTSAP10619 480 aa14.62□□□□□ -0.07
LINC00540-202ENST00000616974 KCNQ1P51787 676 aa14.62□□□□□ -0.07
LINC00540-202ENST00000616974 STX17P56962 302 aa14.62□□□□□ -0.07
LINC00540-202ENST00000616974 PTPROQ16827 1216 aa14.62□□□□□ -0.07
LINC00540-202ENST00000616974 C1orf220Q5T0J3 134 aa14.62□□□□□ -0.07
LINC00540-202ENST00000616974 KIAA0319Q5VV43 1072 aa14.62□□□□□ -0.07
LINC00540-202ENST00000616974 ADSSL1Q8N142 457 aa14.62□□□□□ -0.07
LINC00540-202ENST00000616974 GBP4Q96PP9 640 aa14.62□□□□□ -0.07
LINC00540-202ENST00000616974 CHST7Q9NS84 486 aa14.62□□□□□ -0.07
LINC00540-202ENST00000616974 KIAA1468Q9P260 1216 aa14.62□□□□□ -0.07
LINC00540-202ENST00000616974 LZTS1Q9Y250 596 aa14.62□□□□□ -0.07
LINC00540-202ENST00000616974 PDXKO00764 312 aa14.61□□□□□ -0.07
LINC00540-202ENST00000616974 HCRTO43612 131 aa14.61□□□□□ -0.07
LINC00540-202ENST00000616974 EXOC3O60645 756 aa14.61□□□□□ -0.07
LINC00540-202ENST00000616974 EPCAMP16422 314 aa14.61□□□□□ -0.07
LINC00540-202ENST00000616974 ABCD1P33897 745 aa14.61□□□□□ -0.07
LINC00540-202ENST00000616974 UBE3AQ05086 875 aa14.61□□□□□ -0.07
LINC00540-202ENST00000616974 CYP24A1Q07973 514 aa14.61□□□□□ -0.07
LINC00540-202ENST00000616974 C9orf57Q5W0N0 161 aa14.61□□□□□ -0.07
LINC00540-202ENST00000616974 CEP135Q66GS9 1140 aa14.61□□□□□ -0.07
LINC00540-202ENST00000616974 HS2ST1Q7LGA3 356 aa14.61□□□□□ -0.07
LINC00540-202ENST00000616974 RIN2Q8WYP3 895 aaPredicted RBP14.61□□□□□ -0.07
LINC00540-202ENST00000616974 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.61□□□□□ -0.077e-8■■■■■ 186.3
LINC00540-202ENST00000616974 CLDND1Q9NY35 253 aa14.61□□□□□ -0.07
LINC00540-202ENST00000616974 LMCD1Q9NZU5 365 aa14.61□□□□□ -0.07
LINC00540-202ENST00000616974 UBQLN1Q9UMX0 589 aaKnown RBP14.61□□□□□ -0.07
LINC00540-202ENST00000616974 NOTCH4Q99466 2003 aa14.6□□□□□ -0.07
LINC00540-202ENST00000616974 TEX28O15482 410 aa14.6□□□□□ -0.07
LINC00540-202ENST00000616974 ITGB3P05106 788 aa14.6□□□□□ -0.07
LINC00540-202ENST00000616974 KCNA5P22460 613 aa14.6□□□□□ -0.07
LINC00540-202ENST00000616974 NR2F2P24468 414 aa14.6□□□□□ -0.07
LINC00540-202ENST00000616974 KCNC3Q14003 757 aa14.6□□□□□ -0.07
LINC00540-202ENST00000616974 CCDC142Q17RM4 750 aa14.6□□□□□ -0.07
LINC00540-202ENST00000616974 COLEC11Q9BWP8 271 aa14.6□□□□□ -0.07
LINC00540-202ENST00000616974 TLE6Q9H808 572 aa14.6□□□□□ -0.07
LINC00540-202ENST00000616974 DPP3Q9NY33 737 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms