RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 TBC1D7Q9P0N9 293 aa15.39■□□□□ 0.05
LIG1-218ENST00000599322 CACNG4Q9UBN1 327 aa15.39■□□□□ 0.05
LIG1-218ENST00000599322 RCOR1Q9UKL0 485 aa15.39■□□□□ 0.05
LIG1-218ENST00000599322 AGO2Q9UKV8 859 aaKnown RBP15.39■□□□□ 0.05
LIG1-218ENST00000599322 KMT2EQ8IZD2 1858 aa15.39■□□□□ 0.05
LIG1-218ENST00000599322 ARHGEF37A1IGU5 675 aa15.38■□□□□ 0.05
LIG1-218ENST00000599322 ABLIM1O14639 778 aa15.38■□□□□ 0.05
LIG1-218ENST00000599322 POLR2DO15514 142 aaKnown RBP15.38■□□□□ 0.05
LIG1-218ENST00000599322 EFEMP2O95967 443 aa15.38■□□□□ 0.05
LIG1-218ENST00000599322 CYP3A5P20815 502 aa15.38■□□□□ 0.05
LIG1-218ENST00000599322 PAX3P23760 479 aa15.38■□□□□ 0.05
LIG1-218ENST00000599322 MCM4P33991 863 aa15.38■□□□□ 0.05
LIG1-218ENST00000599322 L1TD1Q5T7N2 865 aaKnown RBP15.38■□□□□ 0.05
LIG1-218ENST00000599322 C15orf39Q6ZRI6 1047 aa15.38■□□□□ 0.05
LIG1-218ENST00000599322 GPR149Q86SP6 731 aa15.38■□□□□ 0.05
LIG1-218ENST00000599322 PLCD3Q8N3E9 789 aa15.38■□□□□ 0.05
LIG1-218ENST00000599322 DNAJC19Q96DA6 116 aa15.38■□□□□ 0.05
LIG1-218ENST00000599322 CCDC34Q96HJ3 373 aa15.38■□□□□ 0.05
LIG1-218ENST00000599322 SCAND2PQ9GZW5 306 aaPredicted RBP15.38■□□□□ 0.05
LIG1-218ENST00000599322 GOLGA2P5Q9HBQ8 144 aa15.38■□□□□ 0.05
LIG1-218ENST00000599322 MUTYHQ9UIF7 546 aa15.38■□□□□ 0.05
LIG1-218ENST00000599322 PCDHA7Q9UN72 937 aa15.38■□□□□ 0.05
LIG1-218ENST00000599322 R3HCC1Q9Y3T6 440 aaKnown RBP15.38■□□□□ 0.05
LIG1-218ENST00000599322 CCDC195A0A1B0GUA6 201 aa15.37■□□□□ 0.05
LIG1-218ENST00000599322 LOC730098B7Z3J9 87 aa15.37■□□□□ 0.05
LIG1-218ENST00000599322 SYN3O14994 580 aa15.37■□□□□ 0.05
LIG1-218ENST00000599322 FGFR3P22607 806 aa15.37■□□□□ 0.05
LIG1-218ENST00000599322 ELF1P32519 619 aa15.37■□□□□ 0.05
LIG1-218ENST00000599322 POU5F1Q01860 360 aaKnown RBP15.37■□□□□ 0.05
LIG1-218ENST00000599322 RTP2Q5QGT7 225 aa15.37■□□□□ 0.05
LIG1-218ENST00000599322 SHC4Q6S5L8 630 aa15.37■□□□□ 0.05
LIG1-218ENST00000599322 PRSS55Q6UWB4 352 aaPredicted RBP15.37■□□□□ 0.05
LIG1-218ENST00000599322 CCDC149Q6ZUS6 474 aa15.37■□□□□ 0.05
LIG1-218ENST00000599322 OTOP3Q7RTS5 596 aa15.37■□□□□ 0.05
LIG1-218ENST00000599322 RNF135Q8IUD6 432 aa15.37■□□□□ 0.05
LIG1-218ENST00000599322 TDRD5Q8NAT2 981 aaKnown RBP15.37■□□□□ 0.05
LIG1-218ENST00000599322 KREMEN2Q8NCW0 462 aa15.37■□□□□ 0.05
LIG1-218ENST00000599322 CMASQ8NFW8 434 aaPredicted RBP15.37■□□□□ 0.05
LIG1-218ENST00000599322 LNX1Q8TBB1 728 aaPredicted RBP15.37■□□□□ 0.05
LIG1-218ENST00000599322 ZMAT2Q96NC0 199 aaKnown RBP15.37■□□□□ 0.05
LIG1-218ENST00000599322 CXCL16Q9H2A7 254 aa15.37■□□□□ 0.05
LIG1-218ENST00000599322 ASB7Q9H672 318 aa15.37■□□□□ 0.05
LIG1-218ENST00000599322 KBTBD4Q9NVX7 518 aa15.37■□□□□ 0.05
LIG1-218ENST00000599322 ZDHHC7Q9NXF8 308 aa15.37■□□□□ 0.05
LIG1-218ENST00000599322 TTC26A0AVF1 554 aa15.36■□□□□ 0.05
LIG1-218ENST00000599322 LACTBL1A8MY62 500 aa15.36■□□□□ 0.05
LIG1-218ENST00000599322 KIAA0391O15091 583 aaKnown RBP15.36■□□□□ 0.05
LIG1-218ENST00000599322 TGM5O43548 720 aa15.36■□□□□ 0.05
LIG1-218ENST00000599322 IL18RAPO95256 599 aa15.36■□□□□ 0.05
LIG1-218ENST00000599322 RPL17P18621 184 aaKnown RBP15.36■□□□□ 0.05
LIG1-218ENST00000599322 PKP1Q13835 747 aa15.36■□□□□ 0.05
LIG1-218ENST00000599322 RESP18Q5W5W9 173 aa15.36■□□□□ 0.05
LIG1-218ENST00000599322 DSTYKQ6XUX3 929 aa15.36■□□□□ 0.05
LIG1-218ENST00000599322 HFE2Q6ZVN8 426 aa15.36■□□□□ 0.05
LIG1-218ENST00000599322 RTL10Q7L3V2 364 aa15.36■□□□□ 0.05
LIG1-218ENST00000599322 USP37Q86T82 979 aa15.36■□□□□ 0.05
LIG1-218ENST00000599322 NOC3LQ8WTT2 800 aaKnown RBP15.36■□□□□ 0.05
LIG1-218ENST00000599322 SMG7Q92540 1137 aaKnown RBP15.36■□□□□ 0.05
LIG1-218ENST00000599322 CCDC47Q96A33 483 aaKnown RBP15.36■□□□□ 0.05
LIG1-218ENST00000599322 C18orf25Q96B23 403 aaPredicted RBP15.36■□□□□ 0.05
LIG1-218ENST00000599322 FIZ1Q96SL8 496 aa15.36■□□□□ 0.05
LIG1-218ENST00000599322 TRIM9Q9C026 710 aa15.36■□□□□ 0.05
LIG1-218ENST00000599322 USP25Q9UHP3 1055 aa15.36■□□□□ 0.05
LIG1-218ENST00000599322 CPSF3Q9UKF6 684 aaKnown RBP15.36■□□□□ 0.05
LIG1-218ENST00000599322 KCNH3Q9ULD8 1083 aa15.36■□□□□ 0.05
LIG1-218ENST00000599322 USTQ9Y2C2 406 aa15.36■□□□□ 0.05
LIG1-218ENST00000599322 DERAQ9Y315 318 aa15.36■□□□□ 0.05
LIG1-218ENST00000599322 BACE2Q9Y5Z0 518 aa15.36■□□□□ 0.05
LIG1-218ENST00000599322 A0A087X0B3 334 aa15.35■□□□□ 0.05
LIG1-218ENST00000599322 ANKRD63C9JTQ0 380 aa15.35■□□□□ 0.05
LIG1-218ENST00000599322 XYLBO75191 536 aa15.35■□□□□ 0.05
LIG1-218ENST00000599322 SPATA31D3P0C874 917 aa15.35■□□□□ 0.05
LIG1-218ENST00000599322 GARTP22102 1010 aa15.35■□□□□ 0.05
LIG1-218ENST00000599322 OR1D2P34982 312 aa15.35■□□□□ 0.05
LIG1-218ENST00000599322 TNFSF9P41273 254 aa15.35■□□□□ 0.05
LIG1-218ENST00000599322 BRCC3P46736 316 aa15.35■□□□□ 0.05
LIG1-218ENST00000599322 ACOT2P49753 483 aa15.35■□□□□ 0.05
LIG1-218ENST00000599322 NUCB2P80303 420 aa15.35■□□□□ 0.05
LIG1-218ENST00000599322 SOX4Q06945 474 aaPredicted RBP15.35■□□□□ 0.05
LIG1-218ENST00000599322 SPAG1Q07617 926 aa15.35■□□□□ 0.05
LIG1-218ENST00000599322 TMEM132DQ14C87 1099 aa15.35■□□□□ 0.05
LIG1-218ENST00000599322 ENOX2Q16206 610 aaKnown RBP15.35■□□□□ 0.05
LIG1-218ENST00000599322 PPM1LQ5SGD2 360 aa15.35■□□□□ 0.05
LIG1-218ENST00000599322 AXDND1Q5T1B0 1012 aaPredicted RBP15.35■□□□□ 0.05
LIG1-218ENST00000599322 SPATA31D4Q6ZUB0 917 aa15.35■□□□□ 0.05
LIG1-218ENST00000599322 NT5DC4Q86YG4 428 aa15.35■□□□□ 0.05
LIG1-218ENST00000599322 CACTINQ8WUQ7 758 aaKnown RBP15.35■□□□□ 0.05
LIG1-218ENST00000599322 C7orf25Q9BPX7 421 aa15.35■□□□□ 0.05
LIG1-218ENST00000599322 OXCT2Q9BYC2 517 aaPredicted RBP15.35■□□□□ 0.05
LIG1-218ENST00000599322 POMKQ9H5K3 350 aa15.35■□□□□ 0.05
LIG1-218ENST00000599322 MTRRQ9UBK8 725 aa15.35■□□□□ 0.05
LIG1-218ENST00000599322 STYXL1Q9Y6J8 313 aa15.35■□□□□ 0.05
LIG1-218ENST00000599322 MYO10Q9HD67 2058 aa15.34■□□□□ 0.05
LIG1-218ENST00000599322 FRMD3A2A2Y4 597 aa15.34■□□□□ 0.05
LIG1-218ENST00000599322 GOLGA6L4A6NEF3 574 aa15.34■□□□□ 0.05
LIG1-218ENST00000599322 I3L4J1 428 aa15.34■□□□□ 0.05
LIG1-218ENST00000599322 ZMYND10O75800 440 aa15.34■□□□□ 0.05
LIG1-218ENST00000599322 HNRNPA1P09651 372 aaKnown RBP eCLIP15.34■□□□□ 0.05
LIG1-218ENST00000599322 WEE2P0C1S8 567 aa15.34■□□□□ 0.05
LIG1-218ENST00000599322 MYBP10242 640 aa15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms