RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 SFMBT2Q5VUG0 894 aa16.42■□□□□ 0.22
TRIM28-209ENST00000597423 TMTC1Q8IUR5 882 aa16.42■□□□□ 0.22
TRIM28-209ENST00000597423 EFCAB13Q8IY85 973 aa16.42■□□□□ 0.22
TRIM28-209ENST00000597423 RNF169Q8NCN4 708 aa16.42■□□□□ 0.22
TRIM28-209ENST00000597423 DBF4BQ8NFT6 615 aa16.42■□□□□ 0.22
TRIM28-209ENST00000597423 RSPH1Q8WYR4 309 aa16.42■□□□□ 0.22
TRIM28-209ENST00000597423 SEMA4DQ92854 862 aa16.42■□□□□ 0.22
TRIM28-209ENST00000597423 DNAJC7Q99615 494 aa16.42■□□□□ 0.22
TRIM28-209ENST00000597423 BAG1Q99933 345 aaPredicted RBP16.42■□□□□ 0.22
TRIM28-209ENST00000597423 RNF39Q9H2S5 420 aa16.42■□□□□ 0.22
TRIM28-209ENST00000597423 ELAC1Q9H777 363 aaKnown RBP16.42■□□□□ 0.22
TRIM28-209ENST00000597423 NLRC4Q9NPP4 1024 aa16.42■□□□□ 0.22
TRIM28-209ENST00000597423 PRDM5Q9NQX1 630 aaPredicted RBP16.42■□□□□ 0.22
TRIM28-209ENST00000597423 ABHD10Q9NUJ1 306 aa16.42■□□□□ 0.22
TRIM28-209ENST00000597423 KLK14Q9P0G3 267 aa16.42■□□□□ 0.22
TRIM28-209ENST00000597423 PCDHB7Q9Y5E2 793 aa16.42■□□□□ 0.22
TRIM28-209ENST00000597423 PTPRJQ12913 1337 aa16.42■□□□□ 0.22
TRIM28-209ENST00000597423 C9IYK1 514 aa16.41■□□□□ 0.22
TRIM28-209ENST00000597423 THP07101 528 aa16.41■□□□□ 0.22
TRIM28-209ENST00000597423 GCNT1Q02742 428 aa16.41■□□□□ 0.22
TRIM28-209ENST00000597423 LRMPQ12912 555 aa16.41■□□□□ 0.22
TRIM28-209ENST00000597423 RAPGEF1Q13905 1077 aa16.41■□□□□ 0.22
TRIM28-209ENST00000597423 IKBKEQ14164 716 aa16.41■□□□□ 0.22
TRIM28-209ENST00000597423 ARID5BQ14865 1188 aa16.41■□□□□ 0.22
TRIM28-209ENST00000597423 ZBTB6Q15916 424 aa16.41■□□□□ 0.22
TRIM28-209ENST00000597423 IQCEQ6IPM2 695 aa16.41■□□□□ 0.22
TRIM28-209ENST00000597423 PHLDB3Q6NSJ2 640 aa16.41■□□□□ 0.22
TRIM28-209ENST00000597423 GLB1LQ6UWU2 654 aa16.41■□□□□ 0.22
TRIM28-209ENST00000597423 PPM1KQ8N3J5 372 aa16.41■□□□□ 0.22
TRIM28-209ENST00000597423 OSBPL7Q9BZF2 842 aa16.41■□□□□ 0.22
TRIM28-209ENST00000597423 RSAD1Q9HA92 442 aa16.41■□□□□ 0.22
TRIM28-209ENST00000597423 SIX2Q9NPC8 291 aa16.41■□□□□ 0.22
TRIM28-209ENST00000597423 KANSL3Q9P2N6 904 aa16.41■□□□□ 0.22
TRIM28-209ENST00000597423 LRFN2Q9ULH4 789 aa16.41■□□□□ 0.22
TRIM28-209ENST00000597423 BZW2Q9Y6E2 419 aaKnown RBP16.41■□□□□ 0.22
TRIM28-209ENST00000597423 HOXA2O43364 376 aa16.4■□□□□ 0.22
TRIM28-209ENST00000597423 EFCAB14O75071 495 aa16.4■□□□□ 0.22
TRIM28-209ENST00000597423 VNN1O95497 513 aa16.4■□□□□ 0.22
TRIM28-209ENST00000597423 CST3P01034 146 aaPredicted RBP16.4■□□□□ 0.22
TRIM28-209ENST00000597423 ITGB3P05106 788 aa16.4■□□□□ 0.22
TRIM28-209ENST00000597423 PFKMP08237 780 aa16.4■□□□□ 0.22
TRIM28-209ENST00000597423 SKILP12757 684 aa16.4■□□□□ 0.22
TRIM28-209ENST00000597423 HNRNPH3P31942 346 aaKnown RBP16.4■□□□□ 0.22
TRIM28-209ENST00000597423 PNPLA4P41247 253 aa16.4■□□□□ 0.22
TRIM28-209ENST00000597423 YWHAEP62258 255 aaKnown RBP16.4■□□□□ 0.22
TRIM28-209ENST00000597423 CDK17Q00537 523 aa16.4■□□□□ 0.22
TRIM28-209ENST00000597423 ZNF699Q32M78 642 aa16.4■□□□□ 0.22
TRIM28-209ENST00000597423 DPY19L2P1Q6NXN4 242 aa16.4■□□□□ 0.22
TRIM28-209ENST00000597423 PDXDC1Q6P996 788 aa16.4■□□□□ 0.22
TRIM28-209ENST00000597423 CNKSR3Q6P9H4 555 aa16.4■□□□□ 0.22
TRIM28-209ENST00000597423 CYP26C1Q6V0L0 522 aa16.4■□□□□ 0.22
TRIM28-209ENST00000597423 UBE2Q1Q7Z7E8 422 aa16.4■□□□□ 0.22
TRIM28-209ENST00000597423 RTN4RL1Q86UN2 441 aaPredicted RBP16.4■□□□□ 0.22
TRIM28-209ENST00000597423 C1orf127Q8N9H9 656 aa16.4■□□□□ 0.22
TRIM28-209ENST00000597423 URGCPQ8TCY9 931 aa16.4■□□□□ 0.22
TRIM28-209ENST00000597423 BAP1Q92560 729 aa16.4■□□□□ 0.22
TRIM28-209ENST00000597423 SCLYQ96I15 445 aa16.4■□□□□ 0.22
TRIM28-209ENST00000597423 HTATIP2Q9BUP3 242 aa16.4■□□□□ 0.22
TRIM28-209ENST00000597423 WNT8AQ9H1J5 351 aa16.4■□□□□ 0.22
TRIM28-209ENST00000597423 TMEM161AQ9NX61 479 aa16.4■□□□□ 0.22
TRIM28-209ENST00000597423 AIPL1Q9NZN9 384 aa16.4■□□□□ 0.22
TRIM28-209ENST00000597423 PLAGL2Q9UPG8 496 aa16.4■□□□□ 0.22
TRIM28-209ENST00000597423 AGAP1Q9UPQ3 857 aa16.4■□□□□ 0.22
TRIM28-209ENST00000597423 FHOD1Q9Y613 1164 aa16.4■□□□□ 0.22
TRIM28-209ENST00000597423 ARL5CA6NH57 179 aa16.39■□□□□ 0.21
TRIM28-209ENST00000597423 LRRC53A6NM62 1247 aa16.39■□□□□ 0.21
TRIM28-209ENST00000597423 EPHB6O15197 1021 aa16.39■□□□□ 0.21
TRIM28-209ENST00000597423 MEFVO15553 781 aaPredicted RBP16.39■□□□□ 0.21
TRIM28-209ENST00000597423 STAU1O95793 577 aaKnown RBP16.39■□□□□ 0.21
TRIM28-209ENST00000597423 ASS1P00966 412 aaKnown RBP16.39■□□□□ 0.21
TRIM28-209ENST00000597423 FERP16591 822 aa16.39■□□□□ 0.21
TRIM28-209ENST00000597423 PAX3P23760 479 aa16.39■□□□□ 0.21
TRIM28-209ENST00000597423 RPL9P32969 192 aaKnown RBP16.39■□□□□ 0.21
TRIM28-209ENST00000597423 MYL6P60660 151 aa16.39■□□□□ 0.21
TRIM28-209ENST00000597423 DRAP1Q14919 205 aaPredicted RBP16.39■□□□□ 0.21
TRIM28-209ENST00000597423 GPNMBQ14956 572 aa16.39■□□□□ 0.21
TRIM28-209ENST00000597423 ASIC2Q16515 512 aa16.39■□□□□ 0.21
TRIM28-209ENST00000597423 ZNF667Q5HYK9 610 aa16.39■□□□□ 0.21
TRIM28-209ENST00000597423 MFSD5Q6N075 450 aa16.39■□□□□ 0.21
TRIM28-209ENST00000597423 AGMOQ6ZNB7 445 aa16.39■□□□□ 0.21
TRIM28-209ENST00000597423 DEFB128Q7Z7B8 93 aa16.39■□□□□ 0.21
TRIM28-209ENST00000597423 ZNF598Q86UK7 904 aaKnown RBP16.39■□□□□ 0.21
TRIM28-209ENST00000597423 ABI1Q8IZP0 508 aa16.39■□□□□ 0.21
TRIM28-209ENST00000597423 TTC39CQ8N584 583 aa16.39■□□□□ 0.21
TRIM28-209ENST00000597423 LRRC52Q8N7C0 313 aa16.39■□□□□ 0.21
TRIM28-209ENST00000597423 DDX27Q96GQ7 796 aaKnown RBP16.39■□□□□ 0.21
TRIM28-209ENST00000597423 HPDLQ96IR7 371 aa16.39■□□□□ 0.21
TRIM28-209ENST00000597423 ZMAT2Q96NC0 199 aaKnown RBP16.39■□□□□ 0.21
TRIM28-209ENST00000597423 GAD1Q99259 594 aa16.39■□□□□ 0.21
TRIM28-209ENST00000597423 DNAI2Q9GZS0 605 aa16.39■□□□□ 0.21
TRIM28-209ENST00000597423 FAM124BQ9H5Z6 455 aaPredicted RBP16.39■□□□□ 0.21
TRIM28-209ENST00000597423 UMODL1Q5DID0 1318 aa16.39■□□□□ 0.21
TRIM28-209ENST00000597423 ABHD14A-ACY1A0A1B0GW23 586 aa16.38■□□□□ 0.21
TRIM28-209ENST00000597423 RNF225M0QZC1 329 aaPredicted RBP16.38■□□□□ 0.21
TRIM28-209ENST00000597423 OFD1O75665 1012 aa16.38■□□□□ 0.21
TRIM28-209ENST00000597423 SERPING1P05155 500 aa16.38■□□□□ 0.21
TRIM28-209ENST00000597423 IBSPP21815 317 aaPredicted RBP16.38■□□□□ 0.21
TRIM28-209ENST00000597423 POLR2BP30876 1174 aaKnown RBP16.38■□□□□ 0.21
TRIM28-209ENST00000597423 SOX5P35711 763 aa16.38■□□□□ 0.21
TRIM28-209ENST00000597423 BPIFB4P59827 614 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms