RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 ZACNQ401N2 412 aa6.66□□□□□ -1.34
LIG3-206ENST00000586058 ZNF667Q5HYK9 610 aa6.66□□□□□ -1.34
LIG3-206ENST00000586058 LMBRD2Q68DH5 695 aaPredicted RBP6.66□□□□□ -1.34
LIG3-206ENST00000586058 SMYD5Q6GMV2 418 aa6.66□□□□□ -1.34
LIG3-206ENST00000586058 IQCEQ6IPM2 695 aa6.66□□□□□ -1.34
LIG3-206ENST00000586058 GDF6Q6KF10 455 aaPredicted RBP6.66□□□□□ -1.34
LIG3-206ENST00000586058 FAM43BQ6ZT52 329 aaPredicted RBP6.66□□□□□ -1.34
LIG3-206ENST00000586058 SV2AQ7L0J3 742 aa6.66□□□□□ -1.34
LIG3-206ENST00000586058 CTU1Q7Z7A3 348 aaKnown RBP6.66□□□□□ -1.34
LIG3-206ENST00000586058 TTC39CQ8N584 583 aa6.66□□□□□ -1.34
LIG3-206ENST00000586058 BEST2Q8NFU1 509 aa6.66□□□□□ -1.34
LIG3-206ENST00000586058 KIF18AQ8NI77 898 aa6.66□□□□□ -1.34
LIG3-206ENST00000586058 CAGE1Q8TC20 777 aa6.66□□□□□ -1.34
LIG3-206ENST00000586058 SH3TC2Q8TF17 1288 aa6.66□□□□□ -1.34
LIG3-206ENST00000586058 BAP1Q92560 729 aa6.66□□□□□ -1.34
LIG3-206ENST00000586058 ZNF592Q92610 1267 aa6.66□□□□□ -1.34
LIG3-206ENST00000586058 TAF4BQ92750 862 aa6.66□□□□□ -1.34
LIG3-206ENST00000586058 JAKMIP2Q96AA8 810 aa6.66□□□□□ -1.34
LIG3-206ENST00000586058 ZBTB10Q96DT7 871 aa6.66□□□□□ -1.34
LIG3-206ENST00000586058 ZBTB45Q96K62 511 aaPredicted RBP6.66□□□□□ -1.34
LIG3-206ENST00000586058 PPP1R13BQ96KQ4 1090 aa6.66□□□□□ -1.34
LIG3-206ENST00000586058 EIF3CQ99613 913 aaKnown RBP6.66□□□□□ -1.34
LIG3-206ENST00000586058 APOL6Q9BWW8 343 aa6.66□□□□□ -1.34
LIG3-206ENST00000586058 MTMR12Q9C0I1 747 aa6.66□□□□□ -1.34
LIG3-206ENST00000586058 RNF208Q9H0X6 261 aa6.66□□□□□ -1.34
LIG3-206ENST00000586058 HAUS4Q9H6D7 363 aa6.66□□□□□ -1.34
LIG3-206ENST00000586058 MINDY3Q9H8M7 445 aa6.66□□□□□ -1.34
LIG3-206ENST00000586058 PLEKHA5Q9HAU0 1116 aa6.66□□□□□ -1.34
LIG3-206ENST00000586058 CHST12Q9NRB3 414 aa6.66□□□□□ -1.34
LIG3-206ENST00000586058 KCND1Q9NSA2 647 aa6.66□□□□□ -1.34
LIG3-206ENST00000586058 TRMT1Q9NXH9 659 aaKnown RBP6.66□□□□□ -1.34
LIG3-206ENST00000586058 MYO1AQ9UBC5 1043 aa6.66□□□□□ -1.34
LIG3-206ENST00000586058 PARP2Q9UGN5 583 aa6.66□□□□□ -1.34
LIG3-206ENST00000586058 ITGA11Q9UKX5 1188 aa6.66□□□□□ -1.34
LIG3-206ENST00000586058 COQ4Q9Y3A0 265 aa6.66□□□□□ -1.34
LIG3-206ENST00000586058 C2CD2Q9Y426 696 aa6.66□□□□□ -1.34
LIG3-206ENST00000586058 CEP83Q9Y592 693 aa6.66□□□□□ -1.34
LIG3-206ENST00000586058 EPN1Q9Y6I3 576 aaPredicted RBP6.66□□□□□ -1.34
LIG3-206ENST00000586058 SQORQ9Y6N5 450 aa6.66□□□□□ -1.34
LIG3-206ENST00000586058 FNDC1Q4ZHG4 1894 aaPredicted RBP6.65□□□□□ -1.34
LIG3-206ENST00000586058 EVI5O60447 810 aa6.65□□□□□ -1.34
LIG3-206ENST00000586058 CSDE1O75534 798 aaKnown RBP6.65□□□□□ -1.34
LIG3-206ENST00000586058 CCL5P13501 91 aa6.65□□□□□ -1.34
LIG3-206ENST00000586058 TNNT1P13805 278 aa6.65□□□□□ -1.34
LIG3-206ENST00000586058 TNFAIP3P21580 790 aa6.65□□□□□ -1.34
LIG3-206ENST00000586058 PNPLA4P41247 253 aa6.65□□□□□ -1.34
LIG3-206ENST00000586058 VAV2P52735 878 aa6.65□□□□□ -1.34
LIG3-206ENST00000586058 NAP1L1P55209 391 aaKnown RBP6.65□□□□□ -1.34
LIG3-206ENST00000586058 JAM2P57087 298 aa6.65□□□□□ -1.34
LIG3-206ENST00000586058 CLDN10P78369 228 aa6.65□□□□□ -1.34
LIG3-206ENST00000586058 PTK2Q05397 1052 aa6.65□□□□□ -1.34
LIG3-206ENST00000586058 SLC18A3Q16572 532 aa6.65□□□□□ -1.34
LIG3-206ENST00000586058 SGSM1Q2NKQ1 1148 aa6.65□□□□□ -1.34
LIG3-206ENST00000586058 SEZ6Q53EL9 994 aa6.65□□□□□ -1.34
LIG3-206ENST00000586058 CCDC122Q5T0U0 273 aa6.65□□□□□ -1.34
LIG3-206ENST00000586058 TDRD10Q5VZ19 366 aaKnown RBP6.65□□□□□ -1.34
LIG3-206ENST00000586058 EEF1DP3Q658K8 133 aa6.65□□□□□ -1.34
LIG3-206ENST00000586058 FBXO46Q6PJ61 603 aaPredicted RBP6.65□□□□□ -1.34
LIG3-206ENST00000586058 CRELD2Q6UXH1 353 aaPredicted RBP6.65□□□□□ -1.34
LIG3-206ENST00000586058 TOGARAM2Q6ZUX3 1019 aa6.65□□□□□ -1.34
LIG3-206ENST00000586058 RPAINQ86UA6 219 aa6.65□□□□□ -1.34
LIG3-206ENST00000586058 CDR2LQ86X02 465 aaPredicted RBP6.65□□□□□ -1.34
LIG3-206ENST00000586058 TMEM139Q8IV31 216 aa6.65□□□□□ -1.34
LIG3-206ENST00000586058 MSANTD4Q8NCY6 345 aa6.65□□□□□ -1.34
LIG3-206ENST00000586058 TAS1R2Q8TE23 839 aa6.65□□□□□ -1.34
LIG3-206ENST00000586058 UBE2Q2Q8WVN8 375 aa6.65□□□□□ -1.34
LIG3-206ENST00000586058 DHX38Q92620 1227 aaKnown RBP6.65□□□□□ -1.34
LIG3-206ENST00000586058 PGBD4Q96DM1 585 aa6.65□□□□□ -1.34
LIG3-206ENST00000586058 FAXDC2Q96IV6 333 aa6.65□□□□□ -1.34
LIG3-206ENST00000586058 DESI2Q9BSY9 194 aa6.65□□□□□ -1.34
LIG3-206ENST00000586058 SENP6Q9GZR1 1112 aaPredicted RBP6.65□□□□□ -1.34
LIG3-206ENST00000586058 NIF3L1Q9GZT8 377 aa6.65□□□□□ -1.34
LIG3-206ENST00000586058 CRISPLD2Q9H0B8 497 aa6.65□□□□□ -1.34
LIG3-206ENST00000586058 ADAMTS10Q9H324 1103 aa6.65□□□□□ -1.34
LIG3-206ENST00000586058 FAM124BQ9H5Z6 455 aaPredicted RBP6.65□□□□□ -1.34
LIG3-206ENST00000586058 PTPRHQ9HD43 1115 aa6.65□□□□□ -1.34
LIG3-206ENST00000586058 UBN1Q9NPG3 1134 aa6.65□□□□□ -1.34
LIG3-206ENST00000586058 LZTFL1Q9NQ48 299 aa6.65□□□□□ -1.34
LIG3-206ENST00000586058 SPTLC3Q9NUV7 552 aa6.65□□□□□ -1.34
LIG3-206ENST00000586058 SLC38A7Q9NVC3 462 aa6.65□□□□□ -1.34
LIG3-206ENST00000586058 AIPL1Q9NZN9 384 aa6.65□□□□□ -1.34
LIG3-206ENST00000586058 UBQLN1Q9UMX0 589 aaKnown RBP6.65□□□□□ -1.34
LIG3-206ENST00000586058 PHF24Q9UPV7 400 aa6.65□□□□□ -1.34
LIG3-206ENST00000586058 ATP8B3O60423 1300 aa6.65□□□□□ -1.35
LIG3-206ENST00000586058 SCN1AP35498 2009 aa6.65□□□□□ -1.35
LIG3-206ENST00000586058 LTBP2Q14767 1821 aa6.64□□□□□ -1.35
LIG3-206ENST00000586058 ARHGEF37A1IGU5 675 aa6.64□□□□□ -1.35
LIG3-206ENST00000586058 DCDC2CA8MYV0 355 aa6.64□□□□□ -1.35
LIG3-206ENST00000586058 ARVCFO00192 962 aa6.64□□□□□ -1.35
LIG3-206ENST00000586058 EPHB6O15197 1021 aa6.64□□□□□ -1.35
LIG3-206ENST00000586058 MED7O43513 233 aa6.64□□□□□ -1.35
LIG3-206ENST00000586058 TACC1O75410 805 aa6.64□□□□□ -1.35
LIG3-206ENST00000586058 RECQL4O94761 1208 aa6.64□□□□□ -1.35
LIG3-206ENST00000586058 NOL4O94818 638 aa6.64□□□□□ -1.35
LIG3-206ENST00000586058 KIF4AO95239 1232 aa6.64□□□□□ -1.35
LIG3-206ENST00000586058 PARNO95453 639 aaKnown RBP6.64□□□□□ -1.35
LIG3-206ENST00000586058 CD4P01730 458 aa6.64□□□□□ -1.35
LIG3-206ENST00000586058 TFRCP02786 760 aaKnown RBP6.64□□□□□ -1.35
LIG3-206ENST00000586058 C4BPAP04003 597 aaKnown RBP6.64□□□□□ -1.35
LIG3-206ENST00000586058 ITGB3P05106 788 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms