RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 WASP42768 502 aa4.81□□□□□ -1.64
SMCHD1-209ENST00000583441 CDK17Q00537 523 aa4.81□□□□□ -1.64
SMCHD1-209ENST00000583441 KIF23Q02241 960 aaPredicted RBP4.81□□□□□ -1.64
SMCHD1-209ENST00000583441 TCIRG1Q13488 830 aa4.81□□□□□ -1.64
SMCHD1-209ENST00000583441 ADRM1Q16186 407 aa4.81□□□□□ -1.64
SMCHD1-209ENST00000583441 IFIT1BQ5T764 474 aaKnown RBP4.81□□□□□ -1.64
SMCHD1-209ENST00000583441 KLHDC10Q6PID8 442 aa4.81□□□□□ -1.64
SMCHD1-209ENST00000583441 ARHGEF19Q8IW93 802 aa4.81□□□□□ -1.64
SMCHD1-209ENST00000583441 TPH2Q8IWU9 490 aa4.81□□□□□ -1.64
SMCHD1-209ENST00000583441 CCDC146Q8IYE0 955 aa4.81□□□□□ -1.64
SMCHD1-209ENST00000583441 ARL8AQ96BM9 186 aa4.81□□□□□ -1.64
SMCHD1-209ENST00000583441 DUSP26Q9BV47 211 aa4.81□□□□□ -1.64
SMCHD1-209ENST00000583441 ADI1Q9BV57 179 aa4.81□□□□□ -1.64
SMCHD1-209ENST00000583441 IL23AQ9NPF7 189 aa4.81□□□□□ -1.64
SMCHD1-209ENST00000583441 RBM8AQ9Y5S9 174 aaKnown RBP4.81□□□□□ -1.64
SMCHD1-209ENST00000583441 FAM171A2A8MVW0 826 aa4.8□□□□□ -1.64
SMCHD1-209ENST00000583441 PLIN1O60240 522 aa4.8□□□□□ -1.64
SMCHD1-209ENST00000583441 KRT18P05783 430 aaKnown RBP4.8□□□□□ -1.64
SMCHD1-209ENST00000583441 LPOP22079 712 aaPredicted RBP4.8□□□□□ -1.64
SMCHD1-209ENST00000583441 EPM2AIP1Q7L775 607 aaPredicted RBP4.8□□□□□ -1.64
SMCHD1-209ENST00000583441 C14orf80Q86SX3 495 aa4.8□□□□□ -1.64
SMCHD1-209ENST00000583441 UNC5BQ8IZJ1 945 aa4.8□□□□□ -1.64
SMCHD1-209ENST00000583441 PPP1R14CQ8TAE6 165 aa4.8□□□□□ -1.64
SMCHD1-209ENST00000583441 GFM2Q969S9 779 aaKnown RBP4.8□□□□□ -1.64
SMCHD1-209ENST00000583441 WDR92Q96MX6 357 aa4.8□□□□□ -1.64
SMCHD1-209ENST00000583441 SLC46A2Q9BY10 475 aa4.8□□□□□ -1.64
SMCHD1-209ENST00000583441 GREM2Q9H772 168 aa4.8□□□□□ -1.64
SMCHD1-209ENST00000583441 KMT5AQ9NQR1 393 aa4.8□□□□□ -1.64
SMCHD1-209ENST00000583441 C1orf112Q9NSG2 853 aa4.8□□□□□ -1.64
SMCHD1-209ENST00000583441 ZNF70Q9UC06 446 aaPredicted RBP4.8□□□□□ -1.64
SMCHD1-209ENST00000583441 EVLQ9UI08 416 aaPredicted RBP4.8□□□□□ -1.64
SMCHD1-209ENST00000583441 EIF2B4Q9UI10 523 aaKnown RBP4.8□□□□□ -1.64
SMCHD1-209ENST00000583441 TUBD1Q9UJT1 453 aa4.8□□□□□ -1.64
SMCHD1-209ENST00000583441 ARHGEF17Q96PE2 2063 aaPredicted RBP4.8□□□□□ -1.64
SMCHD1-209ENST00000583441 WDR91A4D1P6 747 aa4.79□□□□□ -1.64
SMCHD1-209ENST00000583441 TMEM200CA6NKL6 621 aa4.79□□□□□ -1.64
SMCHD1-209ENST00000583441 DAPK3O43293 454 aa4.79□□□□□ -1.64
SMCHD1-209ENST00000583441 PHF2O75151 1096 aa4.79□□□□□ -1.64
SMCHD1-209ENST00000583441 RPLP2P05387 115 aaKnown RBP4.79□□□□□ -1.64
SMCHD1-209ENST00000583441 UAP1L1Q3KQV9 507 aa4.79□□□□□ -1.64
SMCHD1-209ENST00000583441 DCAF17Q5H9S7 520 aaPredicted RBP4.79□□□□□ -1.64
SMCHD1-209ENST00000583441 MIGA2Q7L4E1 593 aa4.79□□□□□ -1.64
SMCHD1-209ENST00000583441 DGKHQ86XP1 1220 aa4.79□□□□□ -1.64
SMCHD1-209ENST00000583441 GLB1L3Q8NCI6 653 aaPredicted RBP4.79□□□□□ -1.64
SMCHD1-209ENST00000583441 ST8SIA2Q92186 375 aa4.79□□□□□ -1.64
SMCHD1-209ENST00000583441 ZNF512Q96ME7 567 aaPredicted RBP4.79□□□□□ -1.64
SMCHD1-209ENST00000583441 MAP3K14Q99558 947 aa4.79□□□□□ -1.64
SMCHD1-209ENST00000583441 PRDM12Q9H4Q4 367 aa4.79□□□□□ -1.64
SMCHD1-209ENST00000583441 KIAA1586Q9HCI6 787 aa4.79□□□□□ -1.64
SMCHD1-209ENST00000583441 RBM12Q9NTZ6 932 aaKnown RBP4.79□□□□□ -1.64
SMCHD1-209ENST00000583441 SLTMQ9NWH9 1034 aaKnown RBP eCLIP4.79□□□□□ -1.64
SMCHD1-209ENST00000583441 OBP2AQ9NY56 170 aa4.79□□□□□ -1.64
SMCHD1-209ENST00000583441 VSTM5A8MXK1 200 aa4.78□□□□□ -1.64
SMCHD1-209ENST00000583441 PRPF3O43395 683 aaKnown RBP4.78□□□□□ -1.64
SMCHD1-209ENST00000583441 MYL1P05976 194 aa4.78□□□□□ -1.64
SMCHD1-209ENST00000583441 POU2F2P09086 479 aa4.78□□□□□ -1.64
SMCHD1-209ENST00000583441 LTA4HP09960 611 aaKnown RBP4.78□□□□□ -1.64
SMCHD1-209ENST00000583441 GNAT2P19087 354 aa4.78□□□□□ -1.64
SMCHD1-209ENST00000583441 HK1P19367 917 aa4.78□□□□□ -1.64
SMCHD1-209ENST00000583441 CCKBRP32239 447 aa4.78□□□□□ -1.64
SMCHD1-209ENST00000583441 MCAMP43121 646 aa4.78□□□□□ -1.64
SMCHD1-209ENST00000583441 MGAT5Q09328 741 aa4.78□□□□□ -1.64
SMCHD1-209ENST00000583441 MGAT2Q10469 447 aa4.78□□□□□ -1.64
SMCHD1-209ENST00000583441 GBX1Q14549 363 aa4.78□□□□□ -1.64
SMCHD1-209ENST00000583441 ATAT1Q5SQI0 421 aa4.78□□□□□ -1.64
SMCHD1-209ENST00000583441 PPP4R3AQ6IN85 833 aa4.78□□□□□ -1.64
SMCHD1-209ENST00000583441 USP45Q70EL2 814 aa4.78□□□□□ -1.64
SMCHD1-209ENST00000583441 NKD2Q969F2 451 aaPredicted RBP4.78□□□□□ -1.64
SMCHD1-209ENST00000583441 HDAC10Q969S8 669 aa4.78□□□□□ -1.64
SMCHD1-209ENST00000583441 COA7Q96BR5 231 aa4.78□□□□□ -1.64
SMCHD1-209ENST00000583441 SLC2A13Q96QE2 648 aa4.78□□□□□ -1.64
SMCHD1-209ENST00000583441 SLC12A5Q9H2X9 1139 aa4.78□□□□□ -1.64
SMCHD1-209ENST00000583441 SCOCQ9UIL1 159 aa4.78□□□□□ -1.64
SMCHD1-209ENST00000583441 SALL3Q9BXA9 1300 aa4.77□□□□□ -1.65
SMCHD1-209ENST00000583441 ENDOD1O94919 500 aa4.77□□□□□ -1.65
SMCHD1-209ENST00000583441 WNT3AP56704 352 aa4.77□□□□□ -1.65
SMCHD1-209ENST00000583441 ADAM8P78325 824 aa4.77□□□□□ -1.65
SMCHD1-209ENST00000583441 CCT2P78371 535 aaKnown RBP4.77□□□□□ -1.65
SMCHD1-209ENST00000583441 ARHGAP29Q52LW3 1261 aa4.77□□□□□ -1.65
SMCHD1-209ENST00000583441 THEMIS2Q5TEJ8 643 aa4.77□□□□□ -1.65
SMCHD1-209ENST00000583441 ARHGEF25Q86VW2 580 aa4.77□□□□□ -1.65
SMCHD1-209ENST00000583441 BCL6BQ8N143 479 aaPredicted RBP4.77□□□□□ -1.65
SMCHD1-209ENST00000583441 PPM1NQ8N819 430 aa4.77□□□□□ -1.65
SMCHD1-209ENST00000583441 GPR156Q8NFN8 814 aa4.77□□□□□ -1.65
SMCHD1-209ENST00000583441 SLC35G2Q8TBE7 412 aa4.77□□□□□ -1.65
SMCHD1-209ENST00000583441 SLC9A6Q92581 669 aa4.77□□□□□ -1.65
SMCHD1-209ENST00000583441 HPS3Q969F9 1004 aa4.77□□□□□ -1.65
SMCHD1-209ENST00000583441 TTC17Q96AE7 1141 aa4.77□□□□□ -1.65
SMCHD1-209ENST00000583441 RUNDC1Q96C34 613 aa4.77□□□□□ -1.65
SMCHD1-209ENST00000583441 LRGUKQ96M69 825 aa4.77□□□□□ -1.65
SMCHD1-209ENST00000583441 FDXACB1Q9BRP7 624 aaPredicted RBP4.77□□□□□ -1.65
SMCHD1-209ENST00000583441 SOX7Q9BT81 388 aa4.77□□□□□ -1.65
SMCHD1-209ENST00000583441 KCNH6Q9H252 994 aa4.77□□□□□ -1.65
SMCHD1-209ENST00000583441 GABBR1Q9UBS5 961 aa4.77□□□□□ -1.65
SMCHD1-209ENST00000583441 DNAI1Q9UI46 699 aa4.77□□□□□ -1.65
SMCHD1-209ENST00000583441 DNM3Q9UQ16 869 aa4.77□□□□□ -1.65
SMCHD1-209ENST00000583441 CFAP20Q9Y6A4 193 aaKnown RBP4.77□□□□□ -1.65
SMCHD1-209ENST00000583441 RPTORQ8N122 1335 aa4.76□□□□□ -1.65
SMCHD1-209ENST00000583441 A0A1W2PR48 441 aa4.76□□□□□ -1.65
SMCHD1-209ENST00000583441 C2orf78A6NCI8 922 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms