RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 CSGALNACT2Q8N6G5 542 aa16.8■□□□□ 0.28
SS18-216ENST00000580751 RDH13Q8NBN7 331 aa16.8■□□□□ 0.28
SS18-216ENST00000580751 ANKRD20A12PQ8NF67 263 aa16.8■□□□□ 0.28
SS18-216ENST00000580751 DDX27Q96GQ7 796 aaKnown RBP16.8■□□□□ 0.28
SS18-216ENST00000580751 TMEM169Q96HH4 297 aa16.8■□□□□ 0.28
SS18-216ENST00000580751 CERS4Q9HA82 394 aa16.8■□□□□ 0.28
SS18-216ENST00000580751 SPG21Q9NZD8 308 aa16.8■□□□□ 0.28
SS18-216ENST00000580751 FAN1Q9Y2M0 1017 aa16.8■□□□□ 0.28
SS18-216ENST00000580751 ANK1P16157 1881 aa16.8■□□□□ 0.28
SS18-216ENST00000580751 TRIM49BA6NDI0 452 aa16.79■□□□□ 0.28
SS18-216ENST00000580751 CASTOR2A6NHX0 329 aa16.79■□□□□ 0.28
SS18-216ENST00000580751 LRRC10BA6NIK2 292 aa16.79■□□□□ 0.28
SS18-216ENST00000580751 H3BNC9 293 aa16.79■□□□□ 0.28
SS18-216ENST00000580751 NRP1O14786 923 aa16.79■□□□□ 0.28
SS18-216ENST00000580751 NFICP08651 508 aa16.79■□□□□ 0.28
SS18-216ENST00000580751 PSMC2P35998 433 aaKnown RBP16.79■□□□□ 0.28
SS18-216ENST00000580751 PBX3P40426 434 aa16.79■□□□□ 0.28
SS18-216ENST00000580751 PMS1P54277 932 aaKnown RBP16.79■□□□□ 0.28
SS18-216ENST00000580751 PSMD6Q15008 389 aa16.79■□□□□ 0.28
SS18-216ENST00000580751 ZBTB6Q15916 424 aa16.79■□□□□ 0.28
SS18-216ENST00000580751 KLHL23Q8NBE8 558 aa16.79■□□□□ 0.28
SS18-216ENST00000580751 BEST2Q8NFU1 509 aa16.79■□□□□ 0.28
SS18-216ENST00000580751 MFSD14AQ96MC6 490 aa16.79■□□□□ 0.28
SS18-216ENST00000580751 FNBP1Q96RU3 617 aa16.79■□□□□ 0.28
SS18-216ENST00000580751 DUSP9Q99956 384 aaKnown RBP16.79■□□□□ 0.28
SS18-216ENST00000580751 MKNK1Q9BUB5 465 aa16.79■□□□□ 0.28
SS18-216ENST00000580751 COLEC11Q9BWP8 271 aa16.79■□□□□ 0.28
SS18-216ENST00000580751 PDE11AQ9HCR9 933 aa16.79■□□□□ 0.28
SS18-216ENST00000580751 FANCLQ9NW38 375 aa16.79■□□□□ 0.28
SS18-216ENST00000580751 STK39Q9UEW8 545 aa16.79■□□□□ 0.28
SS18-216ENST00000580751 PRG3Q9Y2Y8 225 aaPredicted RBP16.79■□□□□ 0.28
SS18-216ENST00000580751 MYO9BQ13459 2157 aa16.78■□□□□ 0.28
SS18-216ENST00000580751 TULP1O00294 542 aaPredicted RBP16.78■□□□□ 0.28
SS18-216ENST00000580751 SLC16A3O15427 465 aaKnown RBP16.78■□□□□ 0.28
SS18-216ENST00000580751 AKAP3O75969 853 aa16.78■□□□□ 0.28
SS18-216ENST00000580751 FGF18O76093 207 aa16.78■□□□□ 0.28
SS18-216ENST00000580751 EPB41P11171 864 aaKnown RBP16.78■□□□□ 0.28
SS18-216ENST00000580751 RPL9P32969 192 aaKnown RBP16.78■□□□□ 0.28
SS18-216ENST00000580751 CASP4P49662 377 aa16.78■□□□□ 0.28
SS18-216ENST00000580751 STX17P56962 302 aa16.78■□□□□ 0.28
SS18-216ENST00000580751 PLCB3Q01970 1234 aa16.78■□□□□ 0.28
SS18-216ENST00000580751 KRT17Q04695 432 aa16.78■□□□□ 0.28
SS18-216ENST00000580751 UBE3AQ05086 875 aa16.78■□□□□ 0.28
SS18-216ENST00000580751 SOX4Q06945 474 aaPredicted RBP16.78■□□□□ 0.28
SS18-216ENST00000580751 GPM6BQ13491 265 aa16.78■□□□□ 0.28
SS18-216ENST00000580751 INTS8Q75QN2 995 aaKnown RBP16.78■□□□□ 0.28
SS18-216ENST00000580751 FILIP1Q7Z7B0 1213 aa16.78■□□□□ 0.28
SS18-216ENST00000580751 WDR49Q8IV35 697 aa16.78■□□□□ 0.28
SS18-216ENST00000580751 EFCAB13Q8IY85 973 aa16.78■□□□□ 0.28
SS18-216ENST00000580751 FAM186BQ8IYM0 893 aa16.78■□□□□ 0.28
SS18-216ENST00000580751 CACTINQ8WUQ7 758 aaKnown RBP16.78■□□□□ 0.28
SS18-216ENST00000580751 C18orf25Q96B23 403 aaPredicted RBP16.78■□□□□ 0.28
SS18-216ENST00000580751 CCDC127Q96BQ5 260 aa16.78■□□□□ 0.28
SS18-216ENST00000580751 IGSF21Q96ID5 467 aa16.78■□□□□ 0.28
SS18-216ENST00000580751 HSD3B7Q9H2F3 369 aa16.78■□□□□ 0.28
SS18-216ENST00000580751 MAGEC2Q9UBF1 373 aaPredicted RBP16.78■□□□□ 0.28
SS18-216ENST00000580751 TUBGCP4Q9UGJ1 667 aa16.78■□□□□ 0.28
SS18-216ENST00000580751 NT5C1B-RDH14C9J2C7 533 aa16.77■□□□□ 0.28
SS18-216ENST00000580751 TMEM189-UBE2V1I3L0A0 370 aa16.77■□□□□ 0.28
SS18-216ENST00000580751 PODXLO00592 558 aa16.77■□□□□ 0.28
SS18-216ENST00000580751 TPM3P06753 285 aa16.77■□□□□ 0.28
SS18-216ENST00000580751 TMEM191BP0C7N4 346 aa16.77■□□□□ 0.28
SS18-216ENST00000580751 DLATP10515 647 aaKnown RBP16.77■□□□□ 0.28
SS18-216ENST00000580751 CDK11BP21127 795 aaKnown RBP16.77■□□□□ 0.28
SS18-216ENST00000580751 LRPAP1P30533 357 aa16.77■□□□□ 0.28
SS18-216ENST00000580751 CLCNKBP51801 687 aa16.77■□□□□ 0.28
SS18-216ENST00000580751 MARSP56192 900 aaKnown RBP16.77■□□□□ 0.28
SS18-216ENST00000580751 WNT7BP56706 349 aa16.77■□□□□ 0.28
SS18-216ENST00000580751 TFAMQ00059 246 aaKnown RBP16.77■□□□□ 0.28
SS18-216ENST00000580751 ENPEPQ07075 957 aa16.77■□□□□ 0.28
SS18-216ENST00000580751 GRIN2CQ14957 1233 aa16.77■□□□□ 0.28
SS18-216ENST00000580751 UPP1Q16831 310 aa16.77■□□□□ 0.28
SS18-216ENST00000580751 DEFB123Q8N688 67 aa16.77■□□□□ 0.28
SS18-216ENST00000580751 CGRRF1Q99675 332 aa16.77■□□□□ 0.28
SS18-216ENST00000580751 SRRTQ9BXP5 876 aaKnown RBP16.77■□□□□ 0.28
SS18-216ENST00000580751 LMAN2LQ9H0V9 348 aa16.77■□□□□ 0.28
SS18-216ENST00000580751 PRDM12Q9H4Q4 367 aa16.77■□□□□ 0.28
SS18-216ENST00000580751 GOLGA2P5Q9HBQ8 144 aa16.77■□□□□ 0.28
SS18-216ENST00000580751 MARCH5Q9NX47 278 aa16.77■□□□□ 0.28
SS18-216ENST00000580751 PUF60Q9UHX1 559 aaKnown RBP16.77■□□□□ 0.28
SS18-216ENST00000580751 LZTS1Q9Y250 596 aa16.77■□□□□ 0.28
SS18-216ENST00000580751 COL4A4P53420 1690 aaPredicted RBP16.77■□□□□ 0.28
SS18-216ENST00000580751 CBFA2T2O43439 604 aa16.76■□□□□ 0.27
SS18-216ENST00000580751 TNNC2P02585 160 aa16.76■□□□□ 0.27
SS18-216ENST00000580751 ITGB1P05556 798 aa16.76■□□□□ 0.27
SS18-216ENST00000580751 KRT13P13646 458 aa16.76■□□□□ 0.27
SS18-216ENST00000580751 TNNI1P19237 187 aa16.76■□□□□ 0.27
SS18-216ENST00000580751 AP3M2P53677 418 aa16.76■□□□□ 0.27
SS18-216ENST00000580751 DUOXA2Q1HG44 320 aa16.76■□□□□ 0.27
SS18-216ENST00000580751 DCLRE1AQ6PJP8 1040 aa16.76■□□□□ 0.27
SS18-216ENST00000580751 TMEM173Q86WV6 379 aaPredicted RBP16.76■□□□□ 0.27
SS18-216ENST00000580751 TMC2Q8TDI7 906 aa16.76■□□□□ 0.27
SS18-216ENST00000580751 GDPD5Q8WTR4 605 aa16.76■□□□□ 0.27
SS18-216ENST00000580751 ANKRD36BP1Q96IX9 119 aa16.76■□□□□ 0.27
SS18-216ENST00000580751 FAM161BQ96MY7 647 aa16.76■□□□□ 0.27
SS18-216ENST00000580751 PAAF1Q9BRP4 392 aa16.76■□□□□ 0.27
SS18-216ENST00000580751 INTS13Q9NVM9 706 aa16.76■□□□□ 0.27
SS18-216ENST00000580751 DPP3Q9NY33 737 aa16.76■□□□□ 0.27
SS18-216ENST00000580751 LIMA1Q9UHB6 759 aaKnown RBP16.76■□□□□ 0.27
SS18-216ENST00000580751 ADAM28Q9UKQ2 775 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms