RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 PDXKO00764 312 aa11.06□□□□□ -0.64
SS18-210ENST00000578700 USO1O60763 962 aaKnown RBP11.06□□□□□ -0.64
SS18-210ENST00000578700 KLRC2P26717 231 aa11.06□□□□□ -0.64
SS18-210ENST00000578700 ABCD1P33897 745 aa11.06□□□□□ -0.64
SS18-210ENST00000578700 RARRES1P49788 294 aa11.06□□□□□ -0.64
SS18-210ENST00000578700 DNM2P50570 870 aa11.06□□□□□ -0.64
SS18-210ENST00000578700 SMTNP53814 917 aa11.06□□□□□ -0.64
SS18-210ENST00000578700 PMS1P54277 932 aaKnown RBP11.06□□□□□ -0.64
SS18-210ENST00000578700 RNASELQ05823 741 aaKnown RBP11.06□□□□□ -0.64
SS18-210ENST00000578700 ANGPT1Q15389 498 aa11.06□□□□□ -0.64
SS18-210ENST00000578700 KNOP1Q1ED39 458 aaKnown RBP11.06□□□□□ -0.64
SS18-210ENST00000578700 TSR1Q2NL82 804 aaKnown RBP11.06□□□□□ -0.64
SS18-210ENST00000578700 EDRF1Q3B7T1 1238 aa11.06□□□□□ -0.64
SS18-210ENST00000578700 XKR3Q5GH77 459 aa11.06□□□□□ -0.64
SS18-210ENST00000578700 CWF19L1Q69YN2 538 aaKnown RBP11.06□□□□□ -0.64
SS18-210ENST00000578700 HS2ST1Q7LGA3 356 aa11.06□□□□□ -0.64
SS18-210ENST00000578700 ERMP1Q7Z2K6 904 aa11.06□□□□□ -0.64
SS18-210ENST00000578700 TMEM173Q86WV6 379 aaPredicted RBP11.06□□□□□ -0.64
SS18-210ENST00000578700 NELFCDQ8IXH7 590 aa11.06□□□□□ -0.64
SS18-210ENST00000578700 SIX5Q8N196 739 aa11.06□□□□□ -0.64
SS18-210ENST00000578700 LPPQ93052 612 aa11.06□□□□□ -0.64
SS18-210ENST00000578700 IQCDQ96DY2 449 aa11.06□□□□□ -0.64
SS18-210ENST00000578700 CEP170P1Q96L14 293 aa11.06□□□□□ -0.64
SS18-210ENST00000578700 PCMTD1Q96MG8 357 aaPredicted RBP11.06□□□□□ -0.64
SS18-210ENST00000578700 ZNF830Q96NB3 372 aaPredicted RBP11.06□□□□□ -0.64
SS18-210ENST00000578700 ZBP1Q9H171 429 aa11.06□□□□□ -0.64
SS18-210ENST00000578700 NRBP2Q9NSY0 501 aa11.06□□□□□ -0.64
SS18-210ENST00000578700 MAFBQ9Y5Q3 323 aaPredicted RBP11.06□□□□□ -0.64
SS18-210ENST00000578700 A0A1W2PQC6 194 aa11.05□□□□□ -0.64
SS18-210ENST00000578700 LGALS16A8MUM7 142 aa11.05□□□□□ -0.64
SS18-210ENST00000578700 AKR1B15C9JRZ8 316 aaPredicted RBP11.05□□□□□ -0.64
SS18-210ENST00000578700 H0YCG3 227 aa11.05□□□□□ -0.64
SS18-210ENST00000578700 ZBTB39O15060 712 aa11.05□□□□□ -0.64
SS18-210ENST00000578700 ZNF500O60304 480 aaPredicted RBP11.05□□□□□ -0.64
SS18-210ENST00000578700 HIP1RO75146 1068 aa11.05□□□□□ -0.64
SS18-210ENST00000578700 CTSAP10619 480 aa11.05□□□□□ -0.64
SS18-210ENST00000578700 MAPTP10636 758 aaKnown RBP11.05□□□□□ -0.64
SS18-210ENST00000578700 SKILP12757 684 aa11.05□□□□□ -0.64
SS18-210ENST00000578700 PLS3P13797 630 aa11.05□□□□□ -0.64
SS18-210ENST00000578700 DARSP14868 501 aaKnown RBP11.05□□□□□ -0.64
SS18-210ENST00000578700 NPR3P17342 541 aa11.05□□□□□ -0.64
SS18-210ENST00000578700 GPC3P51654 580 aa11.05□□□□□ -0.64
SS18-210ENST00000578700 ZNF131P52739 623 aa11.05□□□□□ -0.64
SS18-210ENST00000578700 PPP2R3AQ06190 1150 aa11.05□□□□□ -0.64
SS18-210ENST00000578700 TDGQ13569 410 aa11.05□□□□□ -0.64
SS18-210ENST00000578700 BMT2Q1RMZ1 405 aa11.05□□□□□ -0.64
SS18-210ENST00000578700 TWF2Q6IBS0 349 aaKnown RBP11.05□□□□□ -0.64
SS18-210ENST00000578700 CCDC149Q6ZUS6 474 aa11.05□□□□□ -0.64
SS18-210ENST00000578700 CNGA4Q8IV77 575 aa11.05□□□□□ -0.64
SS18-210ENST00000578700 EXOC8Q8IYI6 725 aa11.05□□□□□ -0.64
SS18-210ENST00000578700 SYCP3Q8IZU3 236 aa11.05□□□□□ -0.64
SS18-210ENST00000578700 DTWD2Q8NBA8 298 aa11.05□□□□□ -0.64
SS18-210ENST00000578700 MCPH1Q8NEM0 835 aa11.05□□□□□ -0.64
SS18-210ENST00000578700 ZNF507Q8TCN5 953 aa11.05□□□□□ -0.64
SS18-210ENST00000578700 SLC22A17Q8WUG5 538 aa11.05□□□□□ -0.64
SS18-210ENST00000578700 SCFD1Q8WVM8 642 aa11.05□□□□□ -0.64
SS18-210ENST00000578700 RIN2Q8WYP3 895 aaPredicted RBP11.05□□□□□ -0.64
SS18-210ENST00000578700 KIFAP3Q92845 792 aa11.05□□□□□ -0.64
SS18-210ENST00000578700 HINFPQ9BQA5 517 aa11.05□□□□□ -0.64
SS18-210ENST00000578700 MRPL9Q9BYD2 267 aaKnown RBP11.05□□□□□ -0.64
SS18-210ENST00000578700 NRDE2Q9H7Z3 1164 aa11.05□□□□□ -0.64
SS18-210ENST00000578700 TMEM206Q9H813 350 aa11.05□□□□□ -0.64
SS18-210ENST00000578700 WRAP73Q9P2S5 460 aaPredicted RBP11.05□□□□□ -0.64
SS18-210ENST00000578700 SEPT9Q9UHD8 586 aaPredicted RBP11.05□□□□□ -0.64
SS18-210ENST00000578700 EXOC7Q9UPT5 735 aa11.05□□□□□ -0.64
SS18-210ENST00000578700 USTQ9Y2C2 406 aa11.05□□□□□ -0.64
SS18-210ENST00000578700 ITIH6Q6UXX5 1313 aa11.05□□□□□ -0.64
SS18-210ENST00000578700 SFI1A8K8P3 1242 aa11.04□□□□□ -0.64
SS18-210ENST00000578700 K7ENM7 598 aa11.04□□□□□ -0.64
SS18-210ENST00000578700 CCP110O43303 1012 aa11.04□□□□□ -0.64
SS18-210ENST00000578700 NARSO43776 548 aaKnown RBP11.04□□□□□ -0.64
SS18-210ENST00000578700 DGAT1O75907 488 aa11.04□□□□□ -0.64
SS18-210ENST00000578700 OATP04181 439 aa11.04□□□□□ -0.64
SS18-210ENST00000578700 GALTP07902 379 aa11.04□□□□□ -0.64
SS18-210ENST00000578700 CFHP08603 1231 aa11.04□□□□□ -0.64
SS18-210ENST00000578700 AOC1P19801 751 aa11.04□□□□□ -0.64
SS18-210ENST00000578700 SCP2P22307 547 aa11.04□□□□□ -0.64
SS18-210ENST00000578700 PRKCEQ02156 737 aa11.04□□□□□ -0.64
SS18-210ENST00000578700 TBC1D8BQ0IIM8 1120 aa11.04□□□□□ -0.64
SS18-210ENST00000578700 ADAM9Q13443 819 aa11.04□□□□□ -0.64
SS18-210ENST00000578700 MAN2A1Q16706 1144 aa11.04□□□□□ -0.64
SS18-210ENST00000578700 UGCGQ16739 394 aa11.04□□□□□ -0.64
SS18-210ENST00000578700 EPM2AIP1Q7L775 607 aaPredicted RBP11.04□□□□□ -0.64
SS18-210ENST00000578700 OTOP3Q7RTS5 596 aa11.04□□□□□ -0.64
SS18-210ENST00000578700 DDX53Q86TM3 631 aaKnown RBP11.04□□□□□ -0.64
SS18-210ENST00000578700 ZNF598Q86UK7 904 aaKnown RBP11.04□□□□□ -0.64
SS18-210ENST00000578700 CACTINQ8WUQ7 758 aaKnown RBP11.04□□□□□ -0.64
SS18-210ENST00000578700 RSAD2Q8WXG1 361 aa11.04□□□□□ -0.64
SS18-210ENST00000578700 CCDC51Q96ER9 411 aa11.04□□□□□ -0.64
SS18-210ENST00000578700 IGSF21Q96ID5 467 aa11.04□□□□□ -0.64
SS18-210ENST00000578700 FAM167AQ96KS9 214 aa11.04□□□□□ -0.64
SS18-210ENST00000578700 IFT74Q96LB3 600 aa11.04□□□□□ -0.64
SS18-210ENST00000578700 RTP3Q9BQQ7 232 aa11.04□□□□□ -0.64
SS18-210ENST00000578700 NUP58Q9BVL2 599 aa11.04□□□□□ -0.64
SS18-210ENST00000578700 GCOM2Q9BZD3 368 aaPredicted RBP11.04□□□□□ -0.64
SS18-210ENST00000578700 C17orf75Q9HAS0 396 aa11.04□□□□□ -0.64
SS18-210ENST00000578700 KCNK12Q9HB15 430 aa11.04□□□□□ -0.64
SS18-210ENST00000578700 METTL14Q9HCE5 456 aaKnown RBP11.04□□□□□ -0.64
SS18-210ENST00000578700 CGNQ9P2M7 1197 aaKnown RBP11.04□□□□□ -0.64
SS18-210ENST00000578700 TRAF3IP3Q9Y228 551 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms