RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 BMPR1AP36894 532 aa19.67■□□□□ 0.74
CCDC40-213ENST00000574933 SLC11A1P49279 550 aa19.67■□□□□ 0.74
CCDC40-213ENST00000574933 BCAR1P56945 870 aa19.67■□□□□ 0.74
CCDC40-213ENST00000574933 IQCB1Q15051 598 aa19.67■□□□□ 0.74
CCDC40-213ENST00000574933 UPP1Q16831 310 aa19.67■□□□□ 0.74
CCDC40-213ENST00000574933 TPD52L1Q16890 204 aaPredicted RBP19.67■□□□□ 0.74
CCDC40-213ENST00000574933 CDKAL1Q5VV42 579 aa19.67■□□□□ 0.74
CCDC40-213ENST00000574933 FAM114A1Q8IWE2 563 aa19.67■□□□□ 0.74
CCDC40-213ENST00000574933 TRIM59Q8IWR1 403 aa19.67■□□□□ 0.74
CCDC40-213ENST00000574933 OR5B17Q8NGF7 314 aa19.67■□□□□ 0.74
CCDC40-213ENST00000574933 CXorf38Q8TB03 319 aa19.67■□□□□ 0.74
CCDC40-213ENST00000574933 ZNF516Q92618 1163 aa19.67■□□□□ 0.74
CCDC40-213ENST00000574933 TIFAQ96CG3 184 aa19.67■□□□□ 0.74
CCDC40-213ENST00000574933 ZNF558Q96NG5 402 aa19.67■□□□□ 0.74
CCDC40-213ENST00000574933 TGS1Q96RS0 853 aaKnown RBP19.67■□□□□ 0.74
CCDC40-213ENST00000574933 TUBGCP4Q9UGJ1 667 aa19.67■□□□□ 0.74
CCDC40-213ENST00000574933 ZC3H11AO75152 810 aaKnown RBP eCLIP19.66■□□□□ 0.74
CCDC40-213ENST00000574933 DLATP10515 647 aaKnown RBP19.66■□□□□ 0.74
CCDC40-213ENST00000574933 TNNI1P19237 187 aa19.66■□□□□ 0.74
CCDC40-213ENST00000574933 GTF2H1P32780 548 aa19.66■□□□□ 0.74
CCDC40-213ENST00000574933 ALDH7A1P49419 539 aaKnown RBP19.66■□□□□ 0.74
CCDC40-213ENST00000574933 DLG4P78352 724 aa19.66■□□□□ 0.74
CCDC40-213ENST00000574933 TFAMQ00059 246 aaKnown RBP19.66■□□□□ 0.74
CCDC40-213ENST00000574933 CCDC40Q4G0X9 1142 aa19.66■□□□□ 0.74
CCDC40-213ENST00000574933 C15orf39Q6ZRI6 1047 aa19.66■□□□□ 0.74
CCDC40-213ENST00000574933 DHX40Q8IX18 779 aaKnown RBP19.66■□□□□ 0.74
CCDC40-213ENST00000574933 SLC39A11Q8N1S5 342 aa19.66■□□□□ 0.74
CCDC40-213ENST00000574933 C1orf127Q8N9H9 656 aa19.66■□□□□ 0.74
CCDC40-213ENST00000574933 SLC35C1Q96A29 364 aa19.66■□□□□ 0.74
CCDC40-213ENST00000574933 ANKRD36BP1Q96IX9 119 aa19.66■□□□□ 0.74
CCDC40-213ENST00000574933 POP1Q99575 1024 aaKnown RBP19.66■□□□□ 0.74
CCDC40-213ENST00000574933 SLC28A3Q9HAS3 691 aa19.66■□□□□ 0.74
CCDC40-213ENST00000574933 GOLGA2P5Q9HBQ8 144 aa19.66■□□□□ 0.74
CCDC40-213ENST00000574933 DPP3Q9NY33 737 aa19.66■□□□□ 0.74
CCDC40-213ENST00000574933 ITGA11Q9UKX5 1188 aa19.66■□□□□ 0.74
CCDC40-213ENST00000574933 FAN1Q9Y2M0 1017 aa19.66■□□□□ 0.74
CCDC40-213ENST00000574933 PCDHB12Q9Y5F1 795 aa19.66■□□□□ 0.74
CCDC40-213ENST00000574933 COL4A4P53420 1690 aaPredicted RBP19.65■□□□□ 0.74
CCDC40-213ENST00000574933 PIRO00625 290 aa19.65■□□□□ 0.74
CCDC40-213ENST00000574933 NRP1O14786 923 aa19.65■□□□□ 0.74
CCDC40-213ENST00000574933 EFEMP2O95967 443 aa19.65■□□□□ 0.74
CCDC40-213ENST00000574933 TNNC2P02585 160 aa19.65■□□□□ 0.74
CCDC40-213ENST00000574933 C4BPAP04003 597 aaKnown RBP19.65■□□□□ 0.74
CCDC40-213ENST00000574933 TMEM191BP0C7N4 346 aa19.65■□□□□ 0.74
CCDC40-213ENST00000574933 PPM1AP35813 382 aa19.65■□□□□ 0.74
CCDC40-213ENST00000574933 ZACNQ401N2 412 aa19.65■□□□□ 0.74
CCDC40-213ENST00000574933 SPOUT1Q5T280 376 aaKnown RBP19.65■□□□□ 0.74
CCDC40-213ENST00000574933 DCLRE1AQ6PJP8 1040 aa19.65■□□□□ 0.74
CCDC40-213ENST00000574933 CD300LGQ6UXG3 332 aa19.65■□□□□ 0.74
CCDC40-213ENST00000574933 CNOT6LQ96LI5 555 aaKnown RBP19.65■□□□□ 0.74
CCDC40-213ENST00000574933 PAAF1Q9BRP4 392 aa19.65■□□□□ 0.74
CCDC40-213ENST00000574933 COLEC11Q9BWP8 271 aa19.65■□□□□ 0.74
CCDC40-213ENST00000574933 MTMR12Q9C0I1 747 aa19.65■□□□□ 0.74
CCDC40-213ENST00000574933 HSD3B7Q9H2F3 369 aa19.65■□□□□ 0.74
CCDC40-213ENST00000574933 SAMSN1Q9NSI8 373 aaKnown RBP19.65■□□□□ 0.74
CCDC40-213ENST00000574933 MARCH5Q9NX47 278 aa19.65■□□□□ 0.74
CCDC40-213ENST00000574933 SIX4Q9UIU6 781 aa19.65■□□□□ 0.74
CCDC40-213ENST00000574933 CASTOR2A6NHX0 329 aa19.64■□□□□ 0.73
CCDC40-213ENST00000574933 SMTNL1A8MU46 457 aa19.64■□□□□ 0.73
CCDC40-213ENST00000574933 SOX1O00570 391 aaPredicted RBP19.64■□□□□ 0.73
CCDC40-213ENST00000574933 PODXLO00592 558 aa19.64■□□□□ 0.73
CCDC40-213ENST00000574933 PMM2O15305 246 aa19.64■□□□□ 0.73
CCDC40-213ENST00000574933 STX10O60499 249 aa19.64■□□□□ 0.73
CCDC40-213ENST00000574933 ZNF18P17022 549 aa19.64■□□□□ 0.73
CCDC40-213ENST00000574933 PAX3P23760 479 aa19.64■□□□□ 0.73
CCDC40-213ENST00000574933 OR1G1P47890 313 aa19.64■□□□□ 0.73
CCDC40-213ENST00000574933 CLCNKBP51801 687 aa19.64■□□□□ 0.73
CCDC40-213ENST00000574933 GUCY2FP51841 1108 aa19.64■□□□□ 0.73
CCDC40-213ENST00000574933 PLCB3Q01970 1234 aa19.64■□□□□ 0.73
CCDC40-213ENST00000574933 PPP3CAQ08209 521 aa19.64■□□□□ 0.73
CCDC40-213ENST00000574933 EPC2Q52LR7 807 aa19.64■□□□□ 0.73
CCDC40-213ENST00000574933 C9orf57Q5W0N0 161 aa19.64■□□□□ 0.73
CCDC40-213ENST00000574933 PPP2R2DQ66LE6 453 aa19.64■□□□□ 0.73
CCDC40-213ENST00000574933 LMBRD2Q68DH5 695 aaPredicted RBP19.64■□□□□ 0.73
CCDC40-213ENST00000574933 TRAPPC11Q7Z392 1133 aa19.64■□□□□ 0.73
CCDC40-213ENST00000574933 AOPEPQ8N6M6 819 aa19.64■□□□□ 0.73
CCDC40-213ENST00000574933 IGSF21Q96ID5 467 aa19.64■□□□□ 0.73
CCDC40-213ENST00000574933 C17orf80Q9BSJ5 609 aa19.64■□□□□ 0.73
CCDC40-213ENST00000574933 TSPY26PQ9H489 355 aa19.64■□□□□ 0.73
CCDC40-213ENST00000574933 SPG21Q9NZD8 308 aa19.64■□□□□ 0.73
CCDC40-213ENST00000574933 TSC2P49815 1807 aa19.63■□□□□ 0.73
CCDC40-213ENST00000574933 TRIM49P0CI25 452 aa19.63■□□□□ 0.73
CCDC40-213ENST00000574933 TRIM49CP0CI26 452 aa19.63■□□□□ 0.73
CCDC40-213ENST00000574933 EEF1GP26641 437 aaKnown RBP19.63■□□□□ 0.73
CCDC40-213ENST00000574933 CTNNB1P35222 781 aa19.63■□□□□ 0.73
CCDC40-213ENST00000574933 HABP4Q5JVS0 413 aaKnown RBP19.63■□□□□ 0.73
CCDC40-213ENST00000574933 GPR153Q6NV75 609 aa19.63■□□□□ 0.73
CCDC40-213ENST00000574933 SV2AQ7L0J3 742 aa19.63■□□□□ 0.73
CCDC40-213ENST00000574933 SPRED2Q7Z698 418 aa19.63■□□□□ 0.73
CCDC40-213ENST00000574933 FAM200AQ8TCP9 573 aa19.63■□□□□ 0.73
CCDC40-213ENST00000574933 FAM84AQ96KN4 292 aa19.63■□□□□ 0.73
CCDC40-213ENST00000574933 ANP32EQ9BTT0 268 aa19.63■□□□□ 0.73
CCDC40-213ENST00000574933 CBX8Q9HC52 389 aa19.63■□□□□ 0.73
CCDC40-213ENST00000574933 TMEM8AQ9HCN3 771 aa19.63■□□□□ 0.73
CCDC40-213ENST00000574933 FANCLQ9NW38 375 aa19.63■□□□□ 0.73
CCDC40-213ENST00000574933 CACNG4Q9UBN1 327 aa19.63■□□□□ 0.73
CCDC40-213ENST00000574933 CHD7Q9P2D1 2997 aa19.63■□□□□ 0.73
CCDC40-213ENST00000574933 PBX3P40426 434 aa19.62■□□□□ 0.73
CCDC40-213ENST00000574933 AARSP49588 968 aaKnown RBP eCLIP19.62■□□□□ 0.73
CCDC40-213ENST00000574933 RBP5P82980 135 aa19.62■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 91.5 ms