RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 DNAJB4Q9UDY4 337 aa18.48■□□□□ 0.55
NUP88-210ENST00000574867 ITGA11Q9UKX5 1188 aa18.48■□□□□ 0.55
NUP88-210ENST00000574867 B4GALT3O60512 393 aa18.47■□□□□ 0.55
NUP88-210ENST00000574867 LINC00271P0C7V0 271 aa18.47■□□□□ 0.55
NUP88-210ENST00000574867 LRPAP1P30533 357 aa18.47■□□□□ 0.55
NUP88-210ENST00000574867 ALDH7A1P49419 539 aaKnown RBP18.47■□□□□ 0.55
NUP88-210ENST00000574867 DLG4P78352 724 aa18.47■□□□□ 0.55
NUP88-210ENST00000574867 IQCB1Q15051 598 aa18.47■□□□□ 0.55
NUP88-210ENST00000574867 TCERG1LQ5VWI1 586 aa18.47■□□□□ 0.55
NUP88-210ENST00000574867 LMBRD2Q68DH5 695 aaPredicted RBP18.47■□□□□ 0.55
NUP88-210ENST00000574867 TRIM59Q8IWR1 403 aa18.47■□□□□ 0.55
NUP88-210ENST00000574867 POP1Q99575 1024 aaKnown RBP18.47■□□□□ 0.55
NUP88-210ENST00000574867 CBX8Q9HC52 389 aa18.47■□□□□ 0.55
NUP88-210ENST00000574867 SAMSN1Q9NSI8 373 aaKnown RBP18.47■□□□□ 0.55
NUP88-210ENST00000574867 DPP3Q9NY33 737 aa18.47■□□□□ 0.55
NUP88-210ENST00000574867 CASTOR2A6NHX0 329 aa18.46■□□□□ 0.55
NUP88-210ENST00000574867 TRIM49P0CI25 452 aa18.46■□□□□ 0.55
NUP88-210ENST00000574867 TRIM49CP0CI26 452 aa18.46■□□□□ 0.55
NUP88-210ENST00000574867 PPM1AP35813 382 aa18.46■□□□□ 0.55
NUP88-210ENST00000574867 BCAR1P56945 870 aa18.46■□□□□ 0.55
NUP88-210ENST00000574867 COLGALT1Q8NBJ5 622 aa18.46■□□□□ 0.55
NUP88-210ENST00000574867 OR5B17Q8NGF7 314 aa18.46■□□□□ 0.55
NUP88-210ENST00000574867 SLC35C1Q96A29 364 aa18.46■□□□□ 0.55
NUP88-210ENST00000574867 NKX2-4Q9H2Z4 354 aa18.46■□□□□ 0.55
NUP88-210ENST00000574867 GOLGA2P5Q9HBQ8 144 aa18.46■□□□□ 0.55
NUP88-210ENST00000574867 FANCLQ9NW38 375 aa18.46■□□□□ 0.55
NUP88-210ENST00000574867 PCDHB12Q9Y5F1 795 aa18.46■□□□□ 0.55
NUP88-210ENST00000574867 KCNJ18B7U540 433 aa18.46■□□□□ 0.55
NUP88-210ENST00000574867 ALDH2P05091 517 aa18.46■□□□□ 0.55
NUP88-210ENST00000574867 OR1G1P47890 313 aa18.46■□□□□ 0.55
NUP88-210ENST00000574867 SLC11A1P49279 550 aa18.46■□□□□ 0.55
NUP88-210ENST00000574867 TPM4P67936 248 aa18.46■□□□□ 0.55
NUP88-210ENST00000574867 KCNJ12Q14500 433 aa18.46■□□□□ 0.55
NUP88-210ENST00000574867 C1orf220Q5T0J3 134 aa18.46■□□□□ 0.55
NUP88-210ENST00000574867 PPP2R2DQ66LE6 453 aa18.46■□□□□ 0.55
NUP88-210ENST00000574867 KCNT2Q6UVM3 1135 aa18.46■□□□□ 0.55
NUP88-210ENST00000574867 TIFAQ96CG3 184 aa18.46■□□□□ 0.55
NUP88-210ENST00000574867 TGS1Q96RS0 853 aaKnown RBP18.46■□□□□ 0.55
NUP88-210ENST00000574867 SLC28A3Q9HAS3 691 aa18.46■□□□□ 0.55
NUP88-210ENST00000574867 PODXLO00592 558 aa18.45■□□□□ 0.54
NUP88-210ENST00000574867 GALTP07902 379 aa18.45■□□□□ 0.54
NUP88-210ENST00000574867 MTIF2P46199 727 aaKnown RBP18.45■□□□□ 0.54
NUP88-210ENST00000574867 CLCNKBP51801 687 aa18.45■□□□□ 0.54
NUP88-210ENST00000574867 TAP1Q03518 808 aa18.45■□□□□ 0.54
NUP88-210ENST00000574867 UPP1Q16831 310 aa18.45■□□□□ 0.54
NUP88-210ENST00000574867 TCP11X2Q5H9J9 407 aa18.45■□□□□ 0.54
NUP88-210ENST00000574867 C1orf127Q8N9H9 656 aa18.45■□□□□ 0.54
NUP88-210ENST00000574867 ANKRD20A12PQ8NF67 263 aa18.45■□□□□ 0.54
NUP88-210ENST00000574867 PLVAPQ9BX97 442 aa18.45■□□□□ 0.54
NUP88-210ENST00000574867 TMEM8AQ9HCN3 771 aa18.45■□□□□ 0.54
NUP88-210ENST00000574867 FAN1Q9Y2M0 1017 aa18.45■□□□□ 0.54
NUP88-210ENST00000574867 UTP18Q9Y5J1 556 aaKnown RBP eCLIP18.45■□□□□ 0.54
NUP88-210ENST00000574867 TRIOBPQ9H2D6 2365 aa18.45■□□□□ 0.54
NUP88-210ENST00000574867 TMEM189-UBE2V1I3L0A0 370 aa18.45■□□□□ 0.54
NUP88-210ENST00000574867 NRP1O14786 923 aa18.45■□□□□ 0.54
NUP88-210ENST00000574867 ZNF18P17022 549 aa18.45■□□□□ 0.54
NUP88-210ENST00000574867 ZACNQ401N2 412 aa18.45■□□□□ 0.54
NUP88-210ENST00000574867 TRAPPC11Q7Z392 1133 aa18.45■□□□□ 0.54
NUP88-210ENST00000574867 CREBRFQ8IUR6 639 aa18.45■□□□□ 0.54
NUP88-210ENST00000574867 ZNF516Q92618 1163 aa18.45■□□□□ 0.54
NUP88-210ENST00000574867 COLEC11Q9BWP8 271 aa18.45■□□□□ 0.54
NUP88-210ENST00000574867 R3HCC1Q9Y3T6 440 aaKnown RBP18.45■□□□□ 0.54
NUP88-210ENST00000574867 ANO9A1A5B4 782 aa18.44■□□□□ 0.54
NUP88-210ENST00000574867 N4BP1O75113 896 aaKnown RBP18.44■□□□□ 0.54
NUP88-210ENST00000574867 ITGB3P05106 788 aa18.44■□□□□ 0.54
NUP88-210ENST00000574867 PAX3P23760 479 aa18.44■□□□□ 0.54
NUP88-210ENST00000574867 CTNNB1P35222 781 aa18.44■□□□□ 0.54
NUP88-210ENST00000574867 BMPR1AP36894 532 aa18.44■□□□□ 0.54
NUP88-210ENST00000574867 MXI1P50539 228 aa18.44■□□□□ 0.54
NUP88-210ENST00000574867 GUCY2FP51841 1108 aa18.44■□□□□ 0.54
NUP88-210ENST00000574867 PPP3CAQ08209 521 aa18.44■□□□□ 0.54
NUP88-210ENST00000574867 BIRC3Q13489 604 aa18.44■□□□□ 0.54
NUP88-210ENST00000574867 HSP90AA4PQ58FG1 418 aa18.44■□□□□ 0.54
NUP88-210ENST00000574867 C9orf57Q5W0N0 161 aa18.44■□□□□ 0.54
NUP88-210ENST00000574867 KRT39Q6A163 491 aa18.44■□□□□ 0.54
NUP88-210ENST00000574867 DCLRE1AQ6PJP8 1040 aa18.44■□□□□ 0.54
NUP88-210ENST00000574867 C15orf39Q6ZRI6 1047 aa18.44■□□□□ 0.54
NUP88-210ENST00000574867 LUZP1Q86V48 1076 aa18.44■□□□□ 0.54
NUP88-210ENST00000574867 ZNF560Q96MR9 790 aa18.44■□□□□ 0.54
NUP88-210ENST00000574867 PRG3Q9Y2Y8 225 aaPredicted RBP18.44■□□□□ 0.54
NUP88-210ENST00000574867 TMEM265A0A087WTH1 108 aa18.43■□□□□ 0.54
NUP88-210ENST00000574867 C5orf67F2Z3F1 127 aa18.43■□□□□ 0.54
NUP88-210ENST00000574867 GOLGA6L19H0YKK7 550 aa18.43■□□□□ 0.54
NUP88-210ENST00000574867 ARHGEF15O94989 841 aa18.43■□□□□ 0.54
NUP88-210ENST00000574867 PNPLA4P41247 253 aa18.43■□□□□ 0.54
NUP88-210ENST00000574867 GCLMP48507 274 aa18.43■□□□□ 0.54
NUP88-210ENST00000574867 ERVK-21P61565 698 aa18.43■□□□□ 0.54
NUP88-210ENST00000574867 RBP5P82980 135 aa18.43■□□□□ 0.54
NUP88-210ENST00000574867 MAN2A1Q16706 1144 aa18.43■□□□□ 0.54
NUP88-210ENST00000574867 TDRD10Q5VZ19 366 aaKnown RBP18.43■□□□□ 0.54
NUP88-210ENST00000574867 SV2AQ7L0J3 742 aa18.43■□□□□ 0.54
NUP88-210ENST00000574867 SLC39A11Q8N1S5 342 aa18.43■□□□□ 0.54
NUP88-210ENST00000574867 LRRC52Q8N7C0 313 aa18.43■□□□□ 0.54
NUP88-210ENST00000574867 PAAF1Q9BRP4 392 aa18.43■□□□□ 0.54
NUP88-210ENST00000574867 HSD3B7Q9H2F3 369 aa18.43■□□□□ 0.54
NUP88-210ENST00000574867 SPG21Q9NZD8 308 aa18.43■□□□□ 0.54
NUP88-210ENST00000574867 STK39Q9UEW8 545 aa18.43■□□□□ 0.54
NUP88-210ENST00000574867 PIRO00625 290 aa18.43■□□□□ 0.54
NUP88-210ENST00000574867 PHACTR2O75167 634 aa18.43■□□□□ 0.54
NUP88-210ENST00000574867 AFPP02771 609 aaKnown RBP18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms