RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 SLC8B1Q6J4K2 584 aa7.38□□□□□ -1.23
VPS53-213ENST00000572334 ELMSAN1Q6PJG2 1045 aa7.38□□□□□ -1.23
VPS53-213ENST00000572334 NPAS3Q8IXF0 933 aa7.38□□□□□ -1.23
VPS53-213ENST00000572334 PJA1Q8NG27 643 aa7.38□□□□□ -1.23
VPS53-213ENST00000572334 SLC7A14Q8TBB6 771 aa7.38□□□□□ -1.23
VPS53-213ENST00000572334 SNX29Q8TEQ0 813 aa7.38□□□□□ -1.23
VPS53-213ENST00000572334 NKD2Q969F2 451 aaPredicted RBP7.38□□□□□ -1.23
VPS53-213ENST00000572334 SNX27Q96L92 541 aa7.38□□□□□ -1.23
VPS53-213ENST00000572334 IFT74Q96LB3 600 aa7.38□□□□□ -1.23
VPS53-213ENST00000572334 ADPGKQ9BRR6 497 aa7.38□□□□□ -1.23
VPS53-213ENST00000572334 NTPCRQ9BSD7 190 aaKnown RBP7.38□□□□□ -1.23
VPS53-213ENST00000572334 TARS2Q9BW92 718 aaKnown RBP7.38□□□□□ -1.23
VPS53-213ENST00000572334 MTF2Q9Y483 593 aaPredicted RBP7.38□□□□□ -1.23
VPS53-213ENST00000572334 BACE2Q9Y5Z0 518 aa7.38□□□□□ -1.23
VPS53-213ENST00000572334 CDY1Q9Y6F8 540 aa7.38□□□□□ -1.23
VPS53-213ENST00000572334 ZFP37Q9Y6Q3 630 aaPredicted RBP7.38□□□□□ -1.23
VPS53-213ENST00000572334 RALGAPA1Q6GYQ0 2036 aa7.38□□□□□ -1.23
VPS53-213ENST00000572334 ZNF638Q14966 1978 aaKnown RBP7.38□□□□□ -1.23
VPS53-213ENST00000572334 NCANO14594 1321 aa7.37□□□□□ -1.23
VPS53-213ENST00000572334 ARHGEF37A1IGU5 675 aa7.37□□□□□ -1.23
VPS53-213ENST00000572334 SFI1A8K8P3 1242 aa7.37□□□□□ -1.23
VPS53-213ENST00000572334 SLC16A4O15374 487 aa7.37□□□□□ -1.23
VPS53-213ENST00000572334 RRP9O43818 475 aaKnown RBP7.37□□□□□ -1.23
VPS53-213ENST00000572334 MOSPD3O75425 235 aa7.37□□□□□ -1.23
VPS53-213ENST00000572334 CD2BP2O95400 341 aaKnown RBP7.37□□□□□ -1.23
VPS53-213ENST00000572334 VNN2O95498 520 aa7.37□□□□□ -1.23
VPS53-213ENST00000572334 SP9P0CG40 484 aa7.37□□□□□ -1.23
VPS53-213ENST00000572334 KCNE1P15382 129 aa7.37□□□□□ -1.23
VPS53-213ENST00000572334 FCARP24071 287 aa7.37□□□□□ -1.23
VPS53-213ENST00000572334 PRPHP41219 470 aa7.37□□□□□ -1.23
VPS53-213ENST00000572334 CCR2P41597 374 aa7.37□□□□□ -1.23
VPS53-213ENST00000572334 SLC12A3P55017 1021 aa7.37□□□□□ -1.23
VPS53-213ENST00000572334 OSTNP61366 133 aa7.37□□□□□ -1.23
VPS53-213ENST00000572334 FZD5Q13467 585 aa7.37□□□□□ -1.23
VPS53-213ENST00000572334 SNW1Q13573 536 aaKnown RBP7.37□□□□□ -1.23
VPS53-213ENST00000572334 TMEM132AQ24JP5 1023 aa7.37□□□□□ -1.23
VPS53-213ENST00000572334 SLC10A6Q3KNW5 377 aa7.37□□□□□ -1.23
VPS53-213ENST00000572334 SEZ6Q53EL9 994 aa7.37□□□□□ -1.23
VPS53-213ENST00000572334 ARSHQ5FYA8 562 aa7.37□□□□□ -1.23
VPS53-213ENST00000572334 VARS2Q5ST30 1063 aaKnown RBP7.37□□□□□ -1.23
VPS53-213ENST00000572334 L1TD1Q5T7N2 865 aaKnown RBP7.37□□□□□ -1.23
VPS53-213ENST00000572334 PDXDC1Q6P996 788 aa7.37□□□□□ -1.23
VPS53-213ENST00000572334 ADSSL1Q8N142 457 aa7.37□□□□□ -1.23
VPS53-213ENST00000572334 ZNF687Q8N1G0 1237 aa7.37□□□□□ -1.23
VPS53-213ENST00000572334 ING5Q8WYH8 240 aa7.37□□□□□ -1.23
VPS53-213ENST00000572334 C18orf25Q96B23 403 aaPredicted RBP7.37□□□□□ -1.23
VPS53-213ENST00000572334 TCEAL4Q96EI5 215 aa7.37□□□□□ -1.23
VPS53-213ENST00000572334 ZSCAN31Q96LW9 406 aaPredicted RBP7.37□□□□□ -1.23
VPS53-213ENST00000572334 UROC1Q96N76 676 aa7.37□□□□□ -1.23
VPS53-213ENST00000572334 KXD1Q9BQD3 176 aa7.37□□□□□ -1.23
VPS53-213ENST00000572334 AVENQ9NQS1 362 aaPredicted RBP7.37□□□□□ -1.23
VPS53-213ENST00000572334 SH2B1Q9NRF2 756 aaPredicted RBP7.37□□□□□ -1.23
VPS53-213ENST00000572334 CNTN3Q9P232 1028 aa7.37□□□□□ -1.23
VPS53-213ENST00000572334 SIT1Q9Y3P8 196 aa7.37□□□□□ -1.23
VPS53-213ENST00000572334 R4GN57 208 aa7.37□□□□□ -1.23
VPS53-213ENST00000572334 SPAG17Q6Q759 2223 aa7.37□□□□□ -1.23
VPS53-213ENST00000572334 SDK1Q7Z5N4 2213 aa7.37□□□□□ -1.23
VPS53-213ENST00000572334 NCOR2Q9Y618 2525 aa7.37□□□□□ -1.23
VPS53-213ENST00000572334 NPHP3-ACAD11A0A0J9YXS1 232 aa7.36□□□□□ -1.23
VPS53-213ENST00000572334 CCDC169A6NNP5 214 aa7.36□□□□□ -1.23
VPS53-213ENST00000572334 PODXLO00592 558 aa7.36□□□□□ -1.23
VPS53-213ENST00000572334 FAM189A1O60320 539 aa7.36□□□□□ -1.23
VPS53-213ENST00000572334 RHOP08100 348 aa7.36□□□□□ -1.23
VPS53-213ENST00000572334 MAPTP10636 758 aaKnown RBP7.36□□□□□ -1.23
VPS53-213ENST00000572334 MCF2P10911 925 aa7.36□□□□□ -1.23
VPS53-213ENST00000572334 CEBPBP17676 345 aa7.36□□□□□ -1.23
VPS53-213ENST00000572334 CD72P21854 359 aa7.36□□□□□ -1.23
VPS53-213ENST00000572334 GUCY2CP25092 1073 aa7.36□□□□□ -1.23
VPS53-213ENST00000572334 ATP2C1P98194 919 aaPredicted RBP7.36□□□□□ -1.23
VPS53-213ENST00000572334 MLF2Q15773 248 aaPredicted RBP7.36□□□□□ -1.23
VPS53-213ENST00000572334 ZNF568Q3ZCX4 644 aa7.36□□□□□ -1.23
VPS53-213ENST00000572334 TMEM119Q4V9L6 283 aa7.36□□□□□ -1.23
VPS53-213ENST00000572334 PABPC1LQ4VXU2 614 aaKnown RBP7.36□□□□□ -1.23
VPS53-213ENST00000572334 SLC44A4Q53GD3 710 aa7.36□□□□□ -1.23
VPS53-213ENST00000572334 SPECC1Q5M775 1068 aa7.36□□□□□ -1.23
VPS53-213ENST00000572334 LIN9Q5TKA1 542 aa7.36□□□□□ -1.23
VPS53-213ENST00000572334 TANGO2Q6ICL3 276 aa7.36□□□□□ -1.23
VPS53-213ENST00000572334 MPZL3Q6UWV2 235 aa7.36□□□□□ -1.23
VPS53-213ENST00000572334 ANKS3Q6ZW76 656 aa7.36□□□□□ -1.23
VPS53-213ENST00000572334 RTL10Q7L3V2 364 aa7.36□□□□□ -1.23
VPS53-213ENST00000572334 C1orf210Q8IVY1 113 aa7.36□□□□□ -1.23
VPS53-213ENST00000572334 TCEAL8Q8IYN2 117 aa7.36□□□□□ -1.23
VPS53-213ENST00000572334 SYT2Q8N9I0 419 aaPredicted RBP7.36□□□□□ -1.23
VPS53-213ENST00000572334 SUMF1Q8NBK3 374 aa7.36□□□□□ -1.23
VPS53-213ENST00000572334 TMEM161BQ8NDZ6 487 aa7.36□□□□□ -1.23
VPS53-213ENST00000572334 ZNF461Q8TAF7 563 aa7.36□□□□□ -1.23
VPS53-213ENST00000572334 SPIRE2Q8WWL2 714 aa7.36□□□□□ -1.23
VPS53-213ENST00000572334 KCNN1Q92952 543 aa7.36□□□□□ -1.23
VPS53-213ENST00000572334 SUSD3Q96L08 255 aa7.36□□□□□ -1.23
VPS53-213ENST00000572334 ACAP3Q96P50 834 aa7.36□□□□□ -1.23
VPS53-213ENST00000572334 CCDC94Q9BW85 323 aaPredicted RBP7.36□□□□□ -1.23
VPS53-213ENST00000572334 MRPL4Q9BYD3 311 aaKnown RBP7.36□□□□□ -1.23
VPS53-213ENST00000572334 KMT5AQ9NQR1 393 aa7.36□□□□□ -1.23
VPS53-213ENST00000572334 TUBGCP4Q9UGJ1 667 aa7.36□□□□□ -1.23
VPS53-213ENST00000572334 KCNH3Q9ULD8 1083 aa7.36□□□□□ -1.23
VPS53-213ENST00000572334 NOL7Q9UMY1 257 aaKnown RBP7.36□□□□□ -1.23
VPS53-213ENST00000572334 POLIQ9UNA4 740 aa7.36□□□□□ -1.23
VPS53-213ENST00000572334 DNM3Q9UQ16 869 aa7.36□□□□□ -1.23
VPS53-213ENST00000572334 EML5Q05BV3 1969 aa7.36□□□□□ -1.23
VPS53-213ENST00000572334 GREB1Q4ZG55 1949 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms