RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 ARHGEF37A1IGU5 675 aa13.04□□□□□ -0.32
CLK3-222ENST00000568232 TMEM8BA6NDV4 472 aa13.04□□□□□ -0.32
CLK3-222ENST00000568232 I3L4J1 428 aa13.04□□□□□ -0.32
CLK3-222ENST00000568232 MOSPD3O75425 235 aa13.04□□□□□ -0.32
CLK3-222ENST00000568232 TKTP29401 623 aaKnown RBP13.04□□□□□ -0.32
CLK3-222ENST00000568232 KPNA1P52294 538 aaPredicted RBP13.04□□□□□ -0.32
CLK3-222ENST00000568232 ELAVL2Q12926 359 aaKnown RBP13.04□□□□□ -0.32
CLK3-222ENST00000568232 CAPSQ13938 189 aa13.04□□□□□ -0.32
CLK3-222ENST00000568232 PCBP1Q15365 356 aaKnown RBP eCLIP13.04□□□□□ -0.32
CLK3-222ENST00000568232 SH3PXD2AQ5TCZ1 1133 aa13.04□□□□□ -0.32
CLK3-222ENST00000568232 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.04□□□□□ -0.32
CLK3-222ENST00000568232 RTL10Q7L3V2 364 aa13.04□□□□□ -0.32
CLK3-222ENST00000568232 GPIHBP1Q8IV16 184 aa13.04□□□□□ -0.32
CLK3-222ENST00000568232 EXOC8Q8IYI6 725 aa13.04□□□□□ -0.32
CLK3-222ENST00000568232 BICD2Q8TD16 824 aa13.04□□□□□ -0.32
CLK3-222ENST00000568232 CSGALNACT1Q8TDX6 532 aa13.04□□□□□ -0.32
CLK3-222ENST00000568232 ASAP3Q8TDY4 903 aa13.04□□□□□ -0.32
CLK3-222ENST00000568232 RSPRY1Q96DX4 576 aa13.04□□□□□ -0.32
CLK3-222ENST00000568232 XPNPEP1Q9NQW7 623 aa13.04□□□□□ -0.32
CLK3-222ENST00000568232 PLSCR2Q9NRY7 297 aa13.04□□□□□ -0.32
CLK3-222ENST00000568232 VPS54Q9P1Q0 977 aa13.04□□□□□ -0.32
CLK3-222ENST00000568232 GREB1Q4ZG55 1949 aa13.03□□□□□ -0.32
CLK3-222ENST00000568232 CYP3A7-CYP3A51PA0A087WV96 503 aa13.03□□□□□ -0.32
CLK3-222ENST00000568232 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.03□□□□□ -0.32
CLK3-222ENST00000568232 A0A1B0GUA9 196 aa13.03□□□□□ -0.32
CLK3-222ENST00000568232 HEPACAM2A8MVW5 462 aa13.03□□□□□ -0.32
CLK3-222ENST00000568232 TAF4O00268 1085 aa13.03□□□□□ -0.32
CLK3-222ENST00000568232 PRRG1O14668 218 aa13.03□□□□□ -0.32
CLK3-222ENST00000568232 PRPF3O43395 683 aaKnown RBP13.03□□□□□ -0.32
CLK3-222ENST00000568232 SEC24AO95486 1093 aa13.03□□□□□ -0.32
CLK3-222ENST00000568232 THP07101 528 aa13.03□□□□□ -0.32
CLK3-222ENST00000568232 P4HBP07237 508 aaKnown RBP13.03□□□□□ -0.32
CLK3-222ENST00000568232 CCDC192P0DO97 292 aa13.03□□□□□ -0.32
CLK3-222ENST00000568232 CYP3A7P24462 503 aa13.03□□□□□ -0.32
CLK3-222ENST00000568232 HOXA6P31267 233 aa13.03□□□□□ -0.32
CLK3-222ENST00000568232 YWHABP31946 246 aaKnown RBP13.03□□□□□ -0.32
CLK3-222ENST00000568232 ROR1Q01973 937 aa13.03□□□□□ -0.32
CLK3-222ENST00000568232 SPIRE1Q08AE8 756 aa13.03□□□□□ -0.32
CLK3-222ENST00000568232 PON2Q15165 354 aa13.03□□□□□ -0.32
CLK3-222ENST00000568232 XKR9Q5GH70 373 aa13.03□□□□□ -0.32
CLK3-222ENST00000568232 PKN3Q6P5Z2 889 aa13.03□□□□□ -0.32
CLK3-222ENST00000568232 CD300LGQ6UXG3 332 aa13.03□□□□□ -0.32
CLK3-222ENST00000568232 PDZD4Q76G19 769 aaPredicted RBP13.03□□□□□ -0.32
CLK3-222ENST00000568232 MFSD6LQ8IWD5 586 aa13.03□□□□□ -0.32
CLK3-222ENST00000568232 ZSCAN18Q8TBC5 510 aaPredicted RBP13.03□□□□□ -0.32
CLK3-222ENST00000568232 DEPDC1BQ8WUY9 529 aa13.03□□□□□ -0.32
CLK3-222ENST00000568232 DDX27Q96GQ7 796 aaKnown RBP13.03□□□□□ -0.32
CLK3-222ENST00000568232 MTRQ99707 1265 aa13.03□□□□□ -0.32
CLK3-222ENST00000568232 EDEM2Q9BV94 578 aa13.03□□□□□ -0.32
CLK3-222ENST00000568232 SLKQ9H2G2 1235 aaPredicted RBP13.03□□□□□ -0.32
CLK3-222ENST00000568232 VPS45Q9NRW7 570 aa13.03□□□□□ -0.32
CLK3-222ENST00000568232 SNTG2Q9NY99 539 aa13.03□□□□□ -0.32
CLK3-222ENST00000568232 RGL1Q9NZL6 768 aa13.03□□□□□ -0.32
CLK3-222ENST00000568232 VAV3Q9UKW4 847 aa13.03□□□□□ -0.32
CLK3-222ENST00000568232 VWA8A3KMH1 1905 aa13.02□□□□□ -0.32
CLK3-222ENST00000568232 SPECC1L-ADORA2AF8WAN1 911 aa13.02□□□□□ -0.33
CLK3-222ENST00000568232 ZNF197O14709 1029 aa13.02□□□□□ -0.33
CLK3-222ENST00000568232 SLC37A4O43826 429 aa13.02□□□□□ -0.33
CLK3-222ENST00000568232 MICAL2O94851 1124 aa13.02□□□□□ -0.33
CLK3-222ENST00000568232 ELF1P32519 619 aa13.02□□□□□ -0.33
CLK3-222ENST00000568232 MLLT6P55198 1093 aaPredicted RBP13.02□□□□□ -0.33
CLK3-222ENST00000568232 ARPP19P56211 112 aa13.02□□□□□ -0.33
CLK3-222ENST00000568232 MXD4Q14582 209 aaPredicted RBP13.02□□□□□ -0.33
CLK3-222ENST00000568232 ADCK5Q3MIX3 580 aa13.02□□□□□ -0.33
CLK3-222ENST00000568232 DGKKQ5KSL6 1271 aa13.02□□□□□ -0.33
CLK3-222ENST00000568232 CYP4A22Q5TCH4 519 aa13.02□□□□□ -0.33
CLK3-222ENST00000568232 KIAA1211LQ6NV74 962 aa13.02□□□□□ -0.33
CLK3-222ENST00000568232 DHX32Q7L7V1 743 aaKnown RBP13.02□□□□□ -0.33
CLK3-222ENST00000568232 ZNF461Q8TAF7 563 aa13.02□□□□□ -0.33
CLK3-222ENST00000568232 LXNQ9BS40 222 aa13.02□□□□□ -0.33
CLK3-222ENST00000568232 CYP4F11Q9HBI6 524 aa13.02□□□□□ -0.33
CLK3-222ENST00000568232 POLR3BQ9NW08 1133 aaPredicted RBP13.02□□□□□ -0.33
CLK3-222ENST00000568232 PPME1Q9Y570 386 aa13.02□□□□□ -0.33
CLK3-222ENST00000568232 BACE2Q9Y5Z0 518 aa13.02□□□□□ -0.33
CLK3-222ENST00000568232 SDK1Q7Z5N4 2213 aa13.02□□□□□ -0.33
CLK3-222ENST00000568232 ZMYM2Q9UBW7 1377 aa13.02□□□□□ -0.33
CLK3-222ENST00000568232 MYBPHLA2RUH7 354 aa13.01□□□□□ -0.33
CLK3-222ENST00000568232 B3GAT3O94766 335 aa13.01□□□□□ -0.33
CLK3-222ENST00000568232 ABLIM3O94929 683 aa13.01□□□□□ -0.33
CLK3-222ENST00000568232 MYL4P12829 197 aa13.01□□□□□ -0.33
CLK3-222ENST00000568232 CTHP32929 405 aa13.01□□□□□ -0.33
CLK3-222ENST00000568232 BRCC3P46736 316 aa13.01□□□□□ -0.33
CLK3-222ENST00000568232 RBM25P49756 843 aaKnown RBP13.01□□□□□ -0.33
CLK3-222ENST00000568232 CLCNKBP51801 687 aa13.01□□□□□ -0.33
CLK3-222ENST00000568232 PPP2R5CQ13362 524 aa13.01□□□□□ -0.33
CLK3-222ENST00000568232 CCINQ13939 588 aa13.01□□□□□ -0.33
CLK3-222ENST00000568232 TFDP1Q14186 410 aa13.01□□□□□ -0.33
CLK3-222ENST00000568232 CTTNQ14247 550 aaKnown RBP13.01□□□□□ -0.33
CLK3-222ENST00000568232 TEAD2Q15562 447 aa13.01□□□□□ -0.33
CLK3-222ENST00000568232 SOWAHCQ53LP3 525 aaPredicted RBP13.01□□□□□ -0.33
CLK3-222ENST00000568232 C4orf19Q8IY42 314 aa13.01□□□□□ -0.33
CLK3-222ENST00000568232 C3orf58Q8NDZ4 430 aa13.01□□□□□ -0.33
CLK3-222ENST00000568232 ZFYVE19Q96K21 471 aa13.01□□□□□ -0.33
CLK3-222ENST00000568232 C8orf33Q9H7E9 229 aaPredicted RBP13.01□□□□□ -0.33
CLK3-222ENST00000568232 TRPV4Q9HBA0 871 aa13.01□□□□□ -0.33
CLK3-222ENST00000568232 GTSE1Q9NYZ3 720 aa13.01□□□□□ -0.33
CLK3-222ENST00000568232 CEP72Q9P209 647 aa13.01□□□□□ -0.33
CLK3-222ENST00000568232 USP20Q9Y2K6 914 aa13.01□□□□□ -0.33
CLK3-222ENST00000568232 PCDHGA5Q9Y5G8 931 aa13.01□□□□□ -0.33
CLK3-222ENST00000568232 INSL5Q9Y5Q6 135 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms