RNA–Protein interactions for RNA: ENST00000567250.5

SF3B3-208, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 3

Gene SF3B3, Length 1,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-208ENST00000567250 PSMD6Q15008 389 aa13.18□□□□□ -0.3
SF3B3-208ENST00000567250 UPP1Q16831 310 aa13.18□□□□□ -0.3
SF3B3-208ENST00000567250 SKOR2Q2VWA4 1001 aaPredicted RBP13.18□□□□□ -0.3
SF3B3-208ENST00000567250 SPATA1Q5VX52 437 aa13.18□□□□□ -0.3
SF3B3-208ENST00000567250 SASS6Q6UVJ0 657 aa13.18□□□□□ -0.3
SF3B3-208ENST00000567250 INTS8Q75QN2 995 aaKnown RBP13.18□□□□□ -0.3
SF3B3-208ENST00000567250 DDX53Q86TM3 631 aaKnown RBP13.18□□□□□ -0.3
SF3B3-208ENST00000567250 WDR49Q8IV35 697 aa13.18□□□□□ -0.3
SF3B3-208ENST00000567250 RDH13Q8NBN7 331 aa13.18□□□□□ -0.3
SF3B3-208ENST00000567250 NELFBQ8WX92 580 aa13.18□□□□□ -0.3
SF3B3-208ENST00000567250 MRPL38Q96DV4 380 aaKnown RBP13.18□□□□□ -0.3
SF3B3-208ENST00000567250 ZNF560Q96MR9 790 aa13.18□□□□□ -0.3
SF3B3-208ENST00000567250 CDX2Q99626 313 aaPredicted RBP13.18□□□□□ -0.3
SF3B3-208ENST00000567250 CXCL16Q9H2A7 254 aa13.18□□□□□ -0.3
SF3B3-208ENST00000567250 GOLGA2P5Q9HBQ8 144 aa13.18□□□□□ -0.3
SF3B3-208ENST00000567250 ALG13Q9NP73 1137 aaKnown RBP13.18□□□□□ -0.3
SF3B3-208ENST00000567250 ENTPD7Q9NQZ7 604 aa13.18□□□□□ -0.3
SF3B3-208ENST00000567250 DMAC2Q9NW81 257 aa13.18□□□□□ -0.3
SF3B3-208ENST00000567250 MARCH5Q9NX47 278 aa13.18□□□□□ -0.3
SF3B3-208ENST00000567250 MTMR10Q9NXD2 777 aa13.18□□□□□ -0.3
SF3B3-208ENST00000567250 TUBGCP4Q9UGJ1 667 aa13.18□□□□□ -0.3
SF3B3-208ENST00000567250 CTNND2Q9UQB3 1225 aa13.18□□□□□ -0.3
SF3B3-208ENST00000567250 NUB1Q9Y5A7 615 aa13.18□□□□□ -0.3
SF3B3-208ENST00000567250 MYO9BQ13459 2157 aa13.18□□□□□ -0.3
SF3B3-208ENST00000567250 CDH23Q9H251 3354 aa13.18□□□□□ -0.3
SF3B3-208ENST00000567250 SZT2Q5T011 3432 aa13.17□□□□□ -0.3
SF3B3-208ENST00000567250 ARHGEF37A1IGU5 675 aa13.17□□□□□ -0.3
SF3B3-208ENST00000567250 FSD2A1L4K1 749 aa13.17□□□□□ -0.3
SF3B3-208ENST00000567250 B3GAT3O94766 335 aa13.17□□□□□ -0.3
SF3B3-208ENST00000567250 KIF4AO95239 1232 aa13.17□□□□□ -0.3
SF3B3-208ENST00000567250 FGFR1OPO95684 399 aaKnown RBP13.17□□□□□ -0.3
SF3B3-208ENST00000567250 URODP06132 367 aa13.17□□□□□ -0.3
SF3B3-208ENST00000567250 DLATP10515 647 aaKnown RBP13.17□□□□□ -0.3
SF3B3-208ENST00000567250 TNNI1P19237 187 aa13.17□□□□□ -0.3
SF3B3-208ENST00000567250 POU3F3P20264 500 aaPredicted RBP13.17□□□□□ -0.3
SF3B3-208ENST00000567250 BMP6P22004 513 aa13.17□□□□□ -0.3
SF3B3-208ENST00000567250 PNPLA4P41247 253 aa13.17□□□□□ -0.3
SF3B3-208ENST00000567250 AP3M2P53677 418 aa13.17□□□□□ -0.3
SF3B3-208ENST00000567250 NLRP12P59046 1061 aa13.17□□□□□ -0.3
SF3B3-208ENST00000567250 TFAMQ00059 246 aaKnown RBP13.17□□□□□ -0.3
SF3B3-208ENST00000567250 SOX4Q06945 474 aaPredicted RBP13.17□□□□□ -0.3
SF3B3-208ENST00000567250 ENPEPQ07075 957 aa13.17□□□□□ -0.3
SF3B3-208ENST00000567250 SPAG1Q07617 926 aa13.17□□□□□ -0.3
SF3B3-208ENST00000567250 ZBTB6Q15916 424 aa13.17□□□□□ -0.3
SF3B3-208ENST00000567250 CAVIN1Q6NZI2 390 aaKnown RBP13.17□□□□□ -0.3
SF3B3-208ENST00000567250 FUT10Q6P4F1 479 aa13.17□□□□□ -0.3
SF3B3-208ENST00000567250 DCLRE1AQ6PJP8 1040 aa13.17□□□□□ -0.3
SF3B3-208ENST00000567250 TMEM173Q86WV6 379 aaPredicted RBP13.17□□□□□ -0.3
SF3B3-208ENST00000567250 EFCAB13Q8IY85 973 aa13.17□□□□□ -0.3
SF3B3-208ENST00000567250 FAM186BQ8IYM0 893 aa13.17□□□□□ -0.3
SF3B3-208ENST00000567250 ZSWIM2Q8NEG5 633 aa13.17□□□□□ -0.3
SF3B3-208ENST00000567250 SPPL3Q8TCT6 385 aa13.17□□□□□ -0.3
SF3B3-208ENST00000567250 MYLIPQ8WY64 445 aa13.17□□□□□ -0.3
SF3B3-208ENST00000567250 C18orf25Q96B23 403 aaPredicted RBP13.17□□□□□ -0.3
SF3B3-208ENST00000567250 GUCD1Q96NT3 240 aa13.17□□□□□ -0.3
SF3B3-208ENST00000567250 CGRRF1Q99675 332 aa13.17□□□□□ -0.3
SF3B3-208ENST00000567250 HERC2P3Q9BVR0 1158 aa13.17□□□□□ -0.3
SF3B3-208ENST00000567250 PDE11AQ9HCR9 933 aa13.17□□□□□ -0.3
SF3B3-208ENST00000567250 DPP3Q9NY33 737 aa13.17□□□□□ -0.3
SF3B3-208ENST00000567250 ITGA11Q9UKX5 1188 aa13.17□□□□□ -0.3
SF3B3-208ENST00000567250 SSX2IPQ9Y2D8 614 aa13.17□□□□□ -0.3
SF3B3-208ENST00000567250 VWA8A3KMH1 1905 aa13.16□□□□□ -0.3
SF3B3-208ENST00000567250 TRIM49BA6NDI0 452 aa13.16□□□□□ -0.3
SF3B3-208ENST00000567250 PPP1R3GB7ZBB8 358 aa13.16□□□□□ -0.3
SF3B3-208ENST00000567250 RFXAPO00287 272 aa13.16□□□□□ -0.3
SF3B3-208ENST00000567250 GRM6O15303 877 aa13.16□□□□□ -0.3
SF3B3-208ENST00000567250 SOD2P04179 222 aa13.16□□□□□ -0.3
SF3B3-208ENST00000567250 CD44P16070 742 aaKnown RBP13.16□□□□□ -0.3
SF3B3-208ENST00000567250 IGFBP4P22692 258 aa13.16□□□□□ -0.3
SF3B3-208ENST00000567250 CREMQ03060 361 aa13.16□□□□□ -0.3
SF3B3-208ENST00000567250 SMC1AQ14683 1233 aaKnown RBP13.16□□□□□ -0.3
SF3B3-208ENST00000567250 CT47A1Q5JQC4 288 aaPredicted RBP13.16□□□□□ -0.3
SF3B3-208ENST00000567250 PDXDC1Q6P996 788 aa13.16□□□□□ -0.3
SF3B3-208ENST00000567250 TMC7Q7Z402 723 aa13.16□□□□□ -0.3
SF3B3-208ENST00000567250 ZC3H3Q8IXZ2 948 aaKnown RBP13.16□□□□□ -0.3
SF3B3-208ENST00000567250 VPS52Q8N1B4 723 aa13.16□□□□□ -0.3
SF3B3-208ENST00000567250 HASPINQ8TF76 798 aa13.16□□□□□ -0.3
SF3B3-208ENST00000567250 CCDC127Q96BQ5 260 aa13.16□□□□□ -0.3
SF3B3-208ENST00000567250 MFSD14AQ96MC6 490 aa13.16□□□□□ -0.3
SF3B3-208ENST00000567250 CEP63Q96MT8 703 aa13.16□□□□□ -0.3
SF3B3-208ENST00000567250 TCF25Q9BQ70 676 aa13.16□□□□□ -0.3
SF3B3-208ENST00000567250 PAAF1Q9BRP4 392 aa13.16□□□□□ -0.3
SF3B3-208ENST00000567250 ZBP1Q9H171 429 aa13.16□□□□□ -0.3
SF3B3-208ENST00000567250 NGRNQ9NPE2 291 aaKnown RBP13.16□□□□□ -0.3
SF3B3-208ENST00000567250 RWDD2AQ9UIY3 292 aa13.16□□□□□ -0.3
SF3B3-208ENST00000567250 AKAP3O75969 853 aa13.15□□□□□ -0.3
SF3B3-208ENST00000567250 LETM1O95202 739 aaPredicted RBP13.15□□□□□ -0.3
SF3B3-208ENST00000567250 ERCC5P28715 1186 aaPredicted RBP13.15□□□□□ -0.3
SF3B3-208ENST00000567250 CA8P35219 290 aa13.15□□□□□ -0.3
SF3B3-208ENST00000567250 GLUD2P49448 558 aa13.15□□□□□ -0.3
SF3B3-208ENST00000567250 BFSP1Q12934 665 aa13.15□□□□□ -0.3
SF3B3-208ENST00000567250 STX1AQ16623 288 aa13.15□□□□□ -0.3
SF3B3-208ENST00000567250 DUOXA2Q1HG44 320 aa13.15□□□□□ -0.3
SF3B3-208ENST00000567250 USP41Q3LFD5 358 aa13.15□□□□□ -0.3
SF3B3-208ENST00000567250 DPCR1Q3MIW9 517 aa13.15□□□□□ -0.3
SF3B3-208ENST00000567250 ANKRD40Q6AI12 368 aa13.15□□□□□ -0.3
SF3B3-208ENST00000567250 KIAA1841Q6NSI8 718 aa13.15□□□□□ -0.3
SF3B3-208ENST00000567250 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.15□□□□□ -0.3
SF3B3-208ENST00000567250 GPR65Q8IYL9 337 aa13.15□□□□□ -0.3
SF3B3-208ENST00000567250 RNF168Q8IYW5 571 aaPredicted RBP13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms