RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 EPN3Q9H201 632 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 PABPC3Q9H361 631 aaKnown RBP6.68□□□□□ -1.34
CLN3-223ENST00000566472 PLEKHA4Q9H4M7 779 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 WHRNQ9P202 907 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 RSPH14Q9UHP6 348 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 SLC12A6Q9UHW9 1150 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 ANAPC7Q9UJX3 599 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 SCAF8Q9UPN6 1271 aaKnown RBP6.68□□□□□ -1.34
CLN3-223ENST00000566472 NR2E1Q9Y466 385 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 CNTNAP2Q9UHC6 1331 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 GSTTP1A0A1W2PQM5 241 aa6.67□□□□□ -1.34
CLN3-223ENST00000566472 SOWAHBA6NEL2 793 aa6.67□□□□□ -1.34
CLN3-223ENST00000566472 NDUFAB1O14561 156 aa6.67□□□□□ -1.34
CLN3-223ENST00000566472 CXCL11O14625 94 aa6.67□□□□□ -1.34
CLN3-223ENST00000566472 TOM1L1O75674 476 aa6.67□□□□□ -1.34
CLN3-223ENST00000566472 CALB1P05937 261 aa6.67□□□□□ -1.34
CLN3-223ENST00000566472 RARAP10276 462 aa6.67□□□□□ -1.34
CLN3-223ENST00000566472 RARGP13631 454 aa6.67□□□□□ -1.34
CLN3-223ENST00000566472 ITIH2P19823 946 aa6.67□□□□□ -1.34
CLN3-223ENST00000566472 GNA15P30679 374 aa6.67□□□□□ -1.34
CLN3-223ENST00000566472 FLT3P36888 993 aa6.67□□□□□ -1.34
CLN3-223ENST00000566472 CETN2P41208 172 aa6.67□□□□□ -1.34
CLN3-223ENST00000566472 RPL21P46778 160 aaKnown RBP6.67□□□□□ -1.34
CLN3-223ENST00000566472 SLC26A2P50443 739 aa6.67□□□□□ -1.34
CLN3-223ENST00000566472 STAT5BP51692 787 aa6.67□□□□□ -1.34
CLN3-223ENST00000566472 SOX10P56693 466 aa6.67□□□□□ -1.34
CLN3-223ENST00000566472 YWHAEP62258 255 aaKnown RBP6.67□□□□□ -1.34
CLN3-223ENST00000566472 NOP14P78316 857 aaKnown RBP6.67□□□□□ -1.34
CLN3-223ENST00000566472 SP2Q02086 613 aa6.67□□□□□ -1.34
CLN3-223ENST00000566472 SP4Q02446 784 aa6.67□□□□□ -1.34
CLN3-223ENST00000566472 TAP1Q03518 808 aa6.67□□□□□ -1.34
CLN3-223ENST00000566472 SLC20A2Q08357 652 aa6.67□□□□□ -1.34
CLN3-223ENST00000566472 IFFO1Q0D2I5 559 aa6.67□□□□□ -1.34
CLN3-223ENST00000566472 CALCOCO2Q13137 446 aa6.67□□□□□ -1.34
CLN3-223ENST00000566472 PTK6Q13882 451 aa6.67□□□□□ -1.34
CLN3-223ENST00000566472 BYSLQ13895 437 aaKnown RBP6.67□□□□□ -1.34
CLN3-223ENST00000566472 CAPSQ13938 189 aa6.67□□□□□ -1.34
CLN3-223ENST00000566472 VGLL4Q14135 290 aa6.67□□□□□ -1.34
CLN3-223ENST00000566472 MXD4Q14582 209 aaPredicted RBP6.67□□□□□ -1.34
CLN3-223ENST00000566472 KRT71Q3SY84 523 aa6.67□□□□□ -1.34
CLN3-223ENST00000566472 LRRC38Q5VT99 294 aa6.67□□□□□ -1.34
CLN3-223ENST00000566472 KCTD16Q68DU8 428 aa6.67□□□□□ -1.34
CLN3-223ENST00000566472 PLEKHA7Q6IQ23 1121 aa6.67□□□□□ -1.34
CLN3-223ENST00000566472 TTC27Q6P3X3 843 aa6.67□□□□□ -1.34
CLN3-223ENST00000566472 TRMT10CQ7L0Y3 403 aaKnown RBP6.67□□□□□ -1.34
CLN3-223ENST00000566472 PLPPR4Q7Z2D5 763 aa6.67□□□□□ -1.34
CLN3-223ENST00000566472 ZBTB8OSQ8IWT0 167 aa6.67□□□□□ -1.34
CLN3-223ENST00000566472 RHOT1Q8IXI2 618 aa6.67□□□□□ -1.34
CLN3-223ENST00000566472 CCDC105Q8IYK2 499 aa6.67□□□□□ -1.34
CLN3-223ENST00000566472 KATNAL2Q8IYT4 538 aa6.67□□□□□ -1.34
CLN3-223ENST00000566472 RBBP8NLQ8NC74 664 aaPredicted RBP6.67□□□□□ -1.34
CLN3-223ENST00000566472 CCHCR1Q8TD31 782 aa6.67□□□□□ -1.34
CLN3-223ENST00000566472 TMEM143Q96AN5 459 aa6.67□□□□□ -1.34
CLN3-223ENST00000566472 C18orf8Q96DM3 657 aa6.67□□□□□ -1.34
CLN3-223ENST00000566472 DDX27Q96GQ7 796 aaKnown RBP6.67□□□□□ -1.34
CLN3-223ENST00000566472 PCYT2Q99447 389 aa6.67□□□□□ -1.34
CLN3-223ENST00000566472 TARS2Q9BW92 718 aaKnown RBP6.67□□□□□ -1.34
CLN3-223ENST00000566472 ROPN1BQ9BZX4 212 aaPredicted RBP6.67□□□□□ -1.34
CLN3-223ENST00000566472 ZNF518BQ9C0D4 1074 aa6.67□□□□□ -1.34
CLN3-223ENST00000566472 SPATC1LQ9H0A9 340 aa6.67□□□□□ -1.34
CLN3-223ENST00000566472 CCDC113Q9H0I3 377 aa6.67□□□□□ -1.34
CLN3-223ENST00000566472 RASSF4Q9H2L5 321 aa6.67□□□□□ -1.34
CLN3-223ENST00000566472 AZI2Q9H6S1 392 aa6.67□□□□□ -1.34
CLN3-223ENST00000566472 ROPN1Q9HAT0 212 aaPredicted RBP6.67□□□□□ -1.34
CLN3-223ENST00000566472 SNX24Q9Y343 169 aa6.67□□□□□ -1.34
CLN3-223ENST00000566472 PCDHB4Q9Y5E5 795 aa6.67□□□□□ -1.34
CLN3-223ENST00000566472 CSADQ9Y600 493 aa6.67□□□□□ -1.34
CLN3-223ENST00000566472 MYH10P35580 1976 aa6.67□□□□□ -1.34
CLN3-223ENST00000566472 MROH7Q68CQ1 1323 aa6.67□□□□□ -1.34
CLN3-223ENST00000566472 A0A087WUV0 522 aaPredicted RBP6.66□□□□□ -1.34
CLN3-223ENST00000566472 IGKV6-21A0A0C4DH24 114 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 A0A0G2JLL6 359 aaPredicted RBP6.66□□□□□ -1.34
CLN3-223ENST00000566472 C5orf60A6NFR6 353 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 OGTO15294 1046 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 ASAP2O43150 1006 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 ATMINO43313 823 aaPredicted RBP6.66□□□□□ -1.34
CLN3-223ENST00000566472 THAP12O43422 761 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 SORBS3O60504 671 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 FAM107AO95990 144 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 GAS8O95995 478 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 CPP00450 1065 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 ASS1P00966 412 aaKnown RBP6.66□□□□□ -1.34
CLN3-223ENST00000566472 AGTP01019 485 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 RRM1P23921 792 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 CDH5P33151 784 aaPredicted RBP6.66□□□□□ -1.34
CLN3-223ENST00000566472 PTPN7P35236 360 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 MAGEA9P43362 315 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 IREB2P48200 963 aaKnown RBP6.66□□□□□ -1.34
CLN3-223ENST00000566472 CCT5P48643 541 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 ATP1A2P50993 1020 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 HIRAP54198 1017 aaPredicted RBP6.66□□□□□ -1.34
CLN3-223ENST00000566472 PLTPP55058 493 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 IRX3P78415 501 aaPredicted RBP6.66□□□□□ -1.34
CLN3-223ENST00000566472 CNTN2Q02246 1040 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 LMNB2Q03252 620 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 POU5F1BQ06416 359 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 MCL1Q07820 350 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 NCOA4Q13772 614 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 TFDP1Q14186 410 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 CCNG2Q16589 344 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms