RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 TRAPPC12Q8WVT3 735 aa9.64□□□□□ -0.87
VPS39-207ENST00000563692 ARNTL2Q8WYA1 636 aa9.64□□□□□ -0.87
VPS39-207ENST00000563692 NLRP4Q96MN2 994 aa9.64□□□□□ -0.87
VPS39-207ENST00000563692 ACO2Q99798 780 aaKnown RBP9.64□□□□□ -0.87
VPS39-207ENST00000563692 TUBB2BQ9BVA1 445 aa9.64□□□□□ -0.87
VPS39-207ENST00000563692 IFIH1Q9BYX4 1025 aaKnown RBP9.64□□□□□ -0.87
VPS39-207ENST00000563692 INO80BQ9C086 356 aaPredicted RBP9.64□□□□□ -0.87
VPS39-207ENST00000563692 TMEM117Q9H0C3 514 aa9.64□□□□□ -0.87
VPS39-207ENST00000563692 FAM49AQ9H0Q0 323 aaPredicted RBP9.64□□□□□ -0.87
VPS39-207ENST00000563692 FZD8Q9H461 694 aa9.64□□□□□ -0.87
VPS39-207ENST00000563692 CERS4Q9HA82 394 aa9.64□□□□□ -0.87
VPS39-207ENST00000563692 SIX2Q9NPC8 291 aa9.64□□□□□ -0.87
VPS39-207ENST00000563692 UBE2TQ9NPD8 197 aaPredicted RBP9.64□□□□□ -0.87
VPS39-207ENST00000563692 RBAKQ9NYW8 714 aaPredicted RBP9.64□□□□□ -0.87
VPS39-207ENST00000563692 ARHGAP20Q9P2F6 1191 aa9.64□□□□□ -0.87
VPS39-207ENST00000563692 INSL6Q9Y581 213 aa9.64□□□□□ -0.87
VPS39-207ENST00000563692 PCDHA13Q9Y5I0 950 aa9.64□□□□□ -0.87
VPS39-207ENST00000563692 COL6A3P12111 3177 aa9.64□□□□□ -0.87
VPS39-207ENST00000563692 TANC1Q9C0D5 1861 aa9.64□□□□□ -0.87
VPS39-207ENST00000563692 MBLAC1A4D2B0 266 aaPredicted RBP9.63□□□□□ -0.87
VPS39-207ENST00000563692 LRRIQ3A6PVS8 624 aaPredicted RBP9.63□□□□□ -0.87
VPS39-207ENST00000563692 ZC3H11AO75152 810 aaKnown RBP eCLIP9.63□□□□□ -0.87
VPS39-207ENST00000563692 GFPT2O94808 682 aa9.63□□□□□ -0.87
VPS39-207ENST00000563692 ADRB2P07550 413 aa9.63□□□□□ -0.87
VPS39-207ENST00000563692 DLATP10515 647 aaKnown RBP9.63□□□□□ -0.87
VPS39-207ENST00000563692 GHRP10912 638 aa9.63□□□□□ -0.87
VPS39-207ENST00000563692 SOX5P35711 763 aa9.63□□□□□ -0.87
VPS39-207ENST00000563692 PRKCIP41743 596 aa9.63□□□□□ -0.87
VPS39-207ENST00000563692 CLCN3P51790 818 aa9.63□□□□□ -0.87
VPS39-207ENST00000563692 VAV2P52735 878 aa9.63□□□□□ -0.87
VPS39-207ENST00000563692 JAM2P57087 298 aa9.63□□□□□ -0.87
VPS39-207ENST00000563692 CLDN10P78369 228 aa9.63□□□□□ -0.87
VPS39-207ENST00000563692 ADAM17P78536 824 aa9.63□□□□□ -0.87
VPS39-207ENST00000563692 TAP1Q03518 808 aa9.63□□□□□ -0.87
VPS39-207ENST00000563692 ARID5AQ03989 594 aa9.63□□□□□ -0.87
VPS39-207ENST00000563692 PCBP1Q15365 356 aaKnown RBP eCLIP9.63□□□□□ -0.87
VPS39-207ENST00000563692 SKIV2LQ15477 1246 aaKnown RBP9.63□□□□□ -0.87
VPS39-207ENST00000563692 CCDC85BQ15834 202 aaPredicted RBP9.63□□□□□ -0.87
VPS39-207ENST00000563692 FAM187BQ17R55 369 aa9.63□□□□□ -0.87
VPS39-207ENST00000563692 EPC2Q52LR7 807 aa9.63□□□□□ -0.87
VPS39-207ENST00000563692 WDR44Q5JSH3 913 aa9.63□□□□□ -0.87
VPS39-207ENST00000563692 FAM26DQ5JW98 314 aa9.63□□□□□ -0.87
VPS39-207ENST00000563692 HGSNATQ68CP4 663 aa9.63□□□□□ -0.87
VPS39-207ENST00000563692 RUFY4Q6ZNE9 571 aa9.63□□□□□ -0.87
VPS39-207ENST00000563692 ENOSF1Q7L5Y1 443 aa9.63□□□□□ -0.87
VPS39-207ENST00000563692 IRF2BP2Q7Z5L9 587 aa9.63□□□□□ -0.87
VPS39-207ENST00000563692 SRGAP1Q7Z6B7 1085 aa9.63□□□□□ -0.87
VPS39-207ENST00000563692 ZNF410Q86VK4 478 aa9.63□□□□□ -0.87
VPS39-207ENST00000563692 IFNLR1Q8IU57 520 aaPredicted RBP9.63□□□□□ -0.87
VPS39-207ENST00000563692 FBXL13Q8NEE6 735 aa9.63□□□□□ -0.87
VPS39-207ENST00000563692 DNAJB3Q8WWF6 145 aa9.63□□□□□ -0.87
VPS39-207ENST00000563692 JAKMIP2Q96AA8 810 aa9.63□□□□□ -0.87
VPS39-207ENST00000563692 YME1L1Q96TA2 773 aa9.63□□□□□ -0.87
VPS39-207ENST00000563692 CCDC113Q9H0I3 377 aa9.63□□□□□ -0.87
VPS39-207ENST00000563692 RAB20Q9NX57 234 aa9.63□□□□□ -0.87
VPS39-207ENST00000563692 ANKFY1Q9P2R3 1169 aa9.63□□□□□ -0.87
VPS39-207ENST00000563692 COQ4Q9Y3A0 265 aa9.63□□□□□ -0.87
VPS39-207ENST00000563692 FHOD1Q9Y613 1164 aa9.63□□□□□ -0.87
VPS39-207ENST00000563692 DOCK5Q9H7D0 1870 aa9.63□□□□□ -0.87
VPS39-207ENST00000563692 TRIP12Q14669 1992 aaPredicted RBP9.63□□□□□ -0.87
VPS39-207ENST00000563692 SCN5AQ14524 2016 aa9.62□□□□□ -0.87
VPS39-207ENST00000563692 OGTO15294 1046 aa9.62□□□□□ -0.87
VPS39-207ENST00000563692 PHACTR2O75167 634 aa9.62□□□□□ -0.87
VPS39-207ENST00000563692 CHRNA1P02708 482 aa9.62□□□□□ -0.87
VPS39-207ENST00000563692 ACOT2P49753 483 aa9.62□□□□□ -0.87
VPS39-207ENST00000563692 GPC3P51654 580 aa9.62□□□□□ -0.87
VPS39-207ENST00000563692 NLRP11P59045 1033 aaKnown RBP9.62□□□□□ -0.87
VPS39-207ENST00000563692 MRPS6P82932 125 aaKnown RBP9.62□□□□□ -0.87
VPS39-207ENST00000563692 POU5F1Q01860 360 aaKnown RBP9.62□□□□□ -0.87
VPS39-207ENST00000563692 APBA1Q02410 837 aa9.62□□□□□ -0.87
VPS39-207ENST00000563692 MBTD1Q05BQ5 628 aa9.62□□□□□ -0.87
VPS39-207ENST00000563692 MCL1Q07820 350 aa9.62□□□□□ -0.87
VPS39-207ENST00000563692 ADGRE1Q14246 886 aa9.62□□□□□ -0.87
VPS39-207ENST00000563692 DRAP1Q14919 205 aaPredicted RBP9.62□□□□□ -0.87
VPS39-207ENST00000563692 SLC18A3Q16572 532 aa9.62□□□□□ -0.87
VPS39-207ENST00000563692 ARHGAP44Q17R89 818 aa9.62□□□□□ -0.87
VPS39-207ENST00000563692 ASTE1Q2TB18 679 aaPredicted RBP9.62□□□□□ -0.87
VPS39-207ENST00000563692 ZNF569Q5MCW4 686 aa9.62□□□□□ -0.87
VPS39-207ENST00000563692 C1orf220Q5T0J3 134 aa9.62□□□□□ -0.87
VPS39-207ENST00000563692 ATF7IP2Q5U623 682 aa9.62□□□□□ -0.87
VPS39-207ENST00000563692 MPZL3Q6UWV2 235 aa9.62□□□□□ -0.87
VPS39-207ENST00000563692 LIN28BQ6ZN17 250 aaKnown RBP eCLIP9.62□□□□□ -0.87
VPS39-207ENST00000563692 SV2AQ7L0J3 742 aa9.62□□□□□ -0.87
VPS39-207ENST00000563692 TMCO2Q7Z6W1 182 aaPredicted RBP9.62□□□□□ -0.87
VPS39-207ENST00000563692 ZBTB33Q86T24 672 aa9.62□□□□□ -0.87
VPS39-207ENST00000563692 LINC01465Q8N7H1 131 aa9.62□□□□□ -0.87
VPS39-207ENST00000563692 USP38Q8NB14 1042 aa9.62□□□□□ -0.87
VPS39-207ENST00000563692 ZSWIM2Q8NEG5 633 aa9.62□□□□□ -0.87
VPS39-207ENST00000563692 MYRIPQ8NFW9 859 aa9.62□□□□□ -0.87
VPS39-207ENST00000563692 LMO3Q8TAP4 145 aa9.62□□□□□ -0.87
VPS39-207ENST00000563692 NLRP7Q8WX94 980 aa9.62□□□□□ -0.87
VPS39-207ENST00000563692 ZBTB45Q96K62 511 aaPredicted RBP9.62□□□□□ -0.87
VPS39-207ENST00000563692 SCLT1Q96NL6 688 aa9.62□□□□□ -0.87
VPS39-207ENST00000563692 NT5C1BQ96P26 610 aa9.62□□□□□ -0.87
VPS39-207ENST00000563692 TGS1Q96RS0 853 aaKnown RBP9.62□□□□□ -0.87
VPS39-207ENST00000563692 POP1Q99575 1024 aaKnown RBP9.62□□□□□ -0.87
VPS39-207ENST00000563692 GCOM2Q9BZD3 368 aaPredicted RBP9.62□□□□□ -0.87
VPS39-207ENST00000563692 THEGQ9P2T0 379 aa9.62□□□□□ -0.87
VPS39-207ENST00000563692 GUCA1BQ9UMX6 200 aa9.62□□□□□ -0.87
VPS39-207ENST00000563692 TNFSF13BQ9Y275 285 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms