RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 ZBTB21Q9ULJ3 1066 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 GRIN2DO15399 1336 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 GNPATO15228 680 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 AKAP10O43572 662 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 PMLP29590 882 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 MFAP3P55082 362 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 ANKRD13DQ6ZTN6 518 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 HPS1Q92902 700 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 SCN3BQ9NY72 215 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 hCG_1984214I3L0E3 225 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 EYA4O95677 639 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 NR2F2P24468 414 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 RAB25P57735 213 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 PRAMEP78395 509 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 ADAM17P78536 824 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 RAB44Q7Z6P3 723 aaPredicted RBP6.57□□□□□ -1.36
CLK3-212ENST00000563418 REXO1Q8N1G1 1221 aaKnown RBP6.57□□□□□ -1.36
CLK3-212ENST00000563418 ZNF713Q8N859 430 aaPredicted RBP6.57□□□□□ -1.36
CLK3-212ENST00000563418 MKL1Q969V6 931 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 NPATQ14207 1427 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 PDZK1P1A8MUH7 402 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 APOL1O14791 398 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 ZSCAN9O15535 394 aaPredicted RBP6.57□□□□□ -1.36
CLK3-212ENST00000563418 ASS1P00966 412 aaKnown RBP6.57□□□□□ -1.36
CLK3-212ENST00000563418 PCNAP12004 261 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 SULT2A1Q06520 285 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 BNIP1Q12981 228 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 TWF2Q6IBS0 349 aaKnown RBP6.57□□□□□ -1.36
CLK3-212ENST00000563418 ZNF589Q86UQ0 364 aaPredicted RBP6.57□□□□□ -1.36
CLK3-212ENST00000563418 UNC45BQ8IWX7 931 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 GALNT4Q8N4A0 578 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 FANCBQ8NB91 859 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 NLRP4Q96MN2 994 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 GPATCH1Q9BRR8 931 aaKnown RBP6.57□□□□□ -1.36
CLK3-212ENST00000563418 TMEM79Q9BSE2 394 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 LMCD1Q9NZU5 365 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 PLAGL2Q9UPG8 496 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 PCDHGA3Q9Y5H0 932 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 TRPM2O94759 1503 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 SNX2O60749 519 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 TKTP29401 623 aaKnown RBP6.57□□□□□ -1.36
CLK3-212ENST00000563418 ABL2P42684 1182 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 RASA2Q15283 850 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 TRIM59Q8IWR1 403 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 KCNH5Q8NCM2 988 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 OSBPL11Q9BXB4 747 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 TBC1D10AQ9BXI6 508 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 ARHGEF10LQ9HCE6 1279 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 MRPL39Q9NYK5 338 aaKnown RBP6.57□□□□□ -1.36
CLK3-212ENST00000563418 TRIM10Q9UDY6 481 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 DMGDHQ9UI17 866 aaKnown RBP6.57□□□□□ -1.36
CLK3-212ENST00000563418 ZHX2Q9Y6X8 837 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 EME2A4GXA9 379 aaPredicted RBP6.57□□□□□ -1.36
CLK3-212ENST00000563418 ALBP02768 609 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 ANPEPP15144 967 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 CABP4P57796 275 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 EDRF1Q3B7T1 1238 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 SNX31Q8N9S9 440 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 DEPDC1BQ8WUY9 529 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 STAMQ92783 540 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 JMJD4Q9H9V9 463 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 HEY2Q9UBP5 337 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 ZNF221Q9UK13 617 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 EFR3BQ9Y2G0 817 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 ADGRF5Q8IZF2 1346 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 C15orf38-AP3S2A0A0A6YYH1 394 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 GCNT3O95395 438 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 FAM228BP0C875 321 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 ZC2HC1CQ53FD0 456 aaPredicted RBP6.57□□□□□ -1.36
CLK3-212ENST00000563418 SPANXN2Q5MJ10 180 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 SPDYAQ5MJ70 313 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 ARPINQ7Z6K5 226 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 ERI1Q8IV48 349 aaKnown RBP6.57□□□□□ -1.36
CLK3-212ENST00000563418 GRAMD1CQ8IYS0 662 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 MAGEE1Q9HCI5 957 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 LRRIQ1Q96JM4 1722 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 PRR23D1E9PI22 279 aaPredicted RBP6.57□□□□□ -1.36
CLK3-212ENST00000563418 PRR23D2P0DMB1 279 aaPredicted RBP6.57□□□□□ -1.36
CLK3-212ENST00000563418 CCNA2P20248 432 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 MYL7Q01449 175 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 HIF1AQ16665 826 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 RFX8Q6ZV50 586 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 CCDC28AQ8IWP9 274 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 ZNF654Q8IZM8 581 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 ABTB2Q8N961 1025 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.57□□□□□ -1.36
CLK3-212ENST00000563418 NRXN1Q9ULB1 1477 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 IFNA16P05015 189 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 POLR2BP30876 1174 aaKnown RBP6.57□□□□□ -1.36
CLK3-212ENST00000563418 COPB2P35606 906 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 IGBP1P78318 339 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 ZNF423Q2M1K9 1284 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 SCARA3Q6AZY7 606 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 ALDH16A1Q8IZ83 802 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 FNDC8Q8TC99 324 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 FRMD8Q9BZ67 464 aaPredicted RBP6.57□□□□□ -1.36
CLK3-212ENST00000563418 USP44Q9H0E7 712 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 ARHGEF3Q9NR81 526 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 ATP8A2Q9NTI2 1148 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 MAP3K20Q9NYL2 800 aaKnown RBP6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms