RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 ANKFY1Q9P2R3 1169 aa20.82■□□□□ 0.92
VPS35-202ENST00000561713 XYLBO75191 536 aa20.81■□□□□ 0.92
VPS35-202ENST00000561713 B3GAT3O94766 335 aa20.81■□□□□ 0.92
VPS35-202ENST00000561713 CD72P21854 359 aa20.81■□□□□ 0.92
VPS35-202ENST00000561713 TKTP29401 623 aaKnown RBP20.81■□□□□ 0.92
VPS35-202ENST00000561713 HOXA9P31269 272 aa20.81■□□□□ 0.92
VPS35-202ENST00000561713 PUM1Q14671 1186 aaKnown RBP eCLIP20.81■□□□□ 0.92
VPS35-202ENST00000561713 UBXN2BQ14CS0 331 aa20.81■□□□□ 0.92
VPS35-202ENST00000561713 MLF2Q15773 248 aaPredicted RBP20.81■□□□□ 0.92
VPS35-202ENST00000561713 AXDND1Q5T1B0 1012 aaPredicted RBP20.81■□□□□ 0.92
VPS35-202ENST00000561713 ZBTB45Q96K62 511 aaPredicted RBP20.81■□□□□ 0.92
VPS35-202ENST00000561713 BCO2Q9BYV7 579 aa20.81■□□□□ 0.92
VPS35-202ENST00000561713 STK24Q9Y6E0 443 aa20.81■□□□□ 0.92
VPS35-202ENST00000561713 GPR179Q6PRD1 2367 aa20.81■□□□□ 0.92
VPS35-202ENST00000561713 FAM170BA6NMN3 283 aa20.8■□□□□ 0.92
VPS35-202ENST00000561713 ABLIM1O14639 778 aa20.8■□□□□ 0.92
VPS35-202ENST00000561713 MEFVO15553 781 aaPredicted RBP20.8■□□□□ 0.92
VPS35-202ENST00000561713 KINO60870 393 aaKnown RBP20.8■□□□□ 0.92
VPS35-202ENST00000561713 OR1D2P34982 312 aa20.8■□□□□ 0.92
VPS35-202ENST00000561713 GRM5P41594 1212 aa20.8■□□□□ 0.92
VPS35-202ENST00000561713 PRKCQQ04759 706 aa20.8■□□□□ 0.92
VPS35-202ENST00000561713 SEZ6Q53EL9 994 aa20.8■□□□□ 0.92
VPS35-202ENST00000561713 CD300LGQ6UXG3 332 aa20.8■□□□□ 0.92
VPS35-202ENST00000561713 RSPO2Q6UXX9 243 aaPredicted RBP20.8■□□□□ 0.92
VPS35-202ENST00000561713 PDZRN4Q6ZMN7 1036 aaPredicted RBP20.8■□□□□ 0.92
VPS35-202ENST00000561713 LRRC15Q8TF66 581 aa20.8■□□□□ 0.92
VPS35-202ENST00000561713 ZMAT2Q96NC0 199 aaKnown RBP20.8■□□□□ 0.92
VPS35-202ENST00000561713 CCDC94Q9BW85 323 aaPredicted RBP20.8■□□□□ 0.92
VPS35-202ENST00000561713 PTPRHQ9HD43 1115 aa20.8■□□□□ 0.92
VPS35-202ENST00000561713 SMC3Q9UQE7 1217 aa20.8■□□□□ 0.92
VPS35-202ENST00000561713 NCOR2Q9Y618 2525 aa20.8■□□□□ 0.92
VPS35-202ENST00000561713 MIA3Q5JRA6 1907 aa20.8■□□□□ 0.92
VPS35-202ENST00000561713 SMIM28A0A1B0GU29 152 aa20.79■□□□□ 0.92
VPS35-202ENST00000561713 LAMTOR5O43504 91 aa20.79■□□□□ 0.92
VPS35-202ENST00000561713 YARSP54577 528 aaKnown RBP20.79■□□□□ 0.92
VPS35-202ENST00000561713 ZNF528Q3MIS6 628 aa20.79■□□□□ 0.92
VPS35-202ENST00000561713 TMEM119Q4V9L6 283 aa20.79■□□□□ 0.92
VPS35-202ENST00000561713 NPAS3Q8IXF0 933 aa20.79■□□□□ 0.92
VPS35-202ENST00000561713 ING5Q8WYH8 240 aa20.79■□□□□ 0.92
VPS35-202ENST00000561713 DDX27Q96GQ7 796 aaKnown RBP20.79■□□□□ 0.92
VPS35-202ENST00000561713 CDK5RAP3Q96JB5 506 aa20.79■□□□□ 0.92
VPS35-202ENST00000561713 TMEM134Q9H6X4 195 aa20.79■□□□□ 0.92
VPS35-202ENST00000561713 UPF2Q9HAU5 1272 aaKnown RBP20.79■□□□□ 0.92
VPS35-202ENST00000561713 DLL3Q9NYJ7 618 aa20.79■□□□□ 0.92
VPS35-202ENST00000561713 DNMT3BQ9UBC3 853 aaKnown RBP20.79■□□□□ 0.92
VPS35-202ENST00000561713 TSC2P49815 1807 aa20.78■□□□□ 0.92
VPS35-202ENST00000561713 TMEM189-UBE2V1I3L0A0 370 aa20.78■□□□□ 0.92
VPS35-202ENST00000561713 PLA2G4BP0C869 781 aa20.78■□□□□ 0.92
VPS35-202ENST00000561713 FGFR3P22607 806 aa20.78■□□□□ 0.92
VPS35-202ENST00000561713 PROZP22891 400 aa20.78■□□□□ 0.92
VPS35-202ENST00000561713 GUCY2CP25092 1073 aa20.78■□□□□ 0.92
VPS35-202ENST00000561713 SLC12A3P55017 1021 aa20.78■□□□□ 0.92
VPS35-202ENST00000561713 CSTF1Q05048 431 aaKnown RBP20.78■□□□□ 0.92
VPS35-202ENST00000561713 GRIN1Q05586 938 aa20.78■□□□□ 0.92
VPS35-202ENST00000561713 ELAVL2Q12926 359 aaKnown RBP20.78■□□□□ 0.92
VPS35-202ENST00000561713 RAB33AQ14088 237 aa20.78■□□□□ 0.92
VPS35-202ENST00000561713 UPP1Q16831 310 aa20.78■□□□□ 0.92
VPS35-202ENST00000561713 UVSSAQ2YD98 709 aa20.78■□□□□ 0.92
VPS35-202ENST00000561713 PABPC1LQ4VXU2 614 aaKnown RBP20.78■□□□□ 0.92
VPS35-202ENST00000561713 HYIQ5T013 277 aa20.78■□□□□ 0.92
VPS35-202ENST00000561713 PDXDC1Q6P996 788 aa20.78■□□□□ 0.92
VPS35-202ENST00000561713 MPZL3Q6UWV2 235 aa20.78■□□□□ 0.92
VPS35-202ENST00000561713 APBB1IPQ7Z5R6 666 aaPredicted RBP20.78■□□□□ 0.92
VPS35-202ENST00000561713 C18orf25Q96B23 403 aaPredicted RBP20.78■□□□□ 0.92
VPS35-202ENST00000561713 TBC1D32Q96NH3 1257 aa20.78■□□□□ 0.92
VPS35-202ENST00000561713 TCHPQ9BT92 498 aa20.78■□□□□ 0.92
VPS35-202ENST00000561713 LTB4R2Q9NPC1 389 aa20.78■□□□□ 0.92
VPS35-202ENST00000561713 MTRRQ9UBK8 725 aa20.78■□□□□ 0.92
VPS35-202ENST00000561713 FBXO4Q9UKT5 387 aa20.78■□□□□ 0.92
VPS35-202ENST00000561713 CDY1Q9Y6F8 540 aa20.78■□□□□ 0.92
VPS35-202ENST00000561713 POU2F2P09086 479 aa20.77■□□□□ 0.92
VPS35-202ENST00000561713 PFKPQ01813 784 aa20.77■□□□□ 0.92
VPS35-202ENST00000561713 DHX8Q14562 1220 aaKnown RBP20.77■□□□□ 0.92
VPS35-202ENST00000561713 RSPO4Q2I0M5 234 aaPredicted RBP20.77■□□□□ 0.92
VPS35-202ENST00000561713 OSBPL6Q9BZF3 934 aa20.77■□□□□ 0.92
VPS35-202ENST00000561713 TOPORSQ9NS56 1045 aaPredicted RBP20.77■□□□□ 0.92
VPS35-202ENST00000561713 PATJQ8NI35 1801 aa20.76■□□□□ 0.91
VPS35-202ENST00000561713 PODXLO00592 558 aa20.76■□□□□ 0.91
VPS35-202ENST00000561713 MAPTP10636 758 aaKnown RBP20.76■□□□□ 0.91
VPS35-202ENST00000561713 MCF2P10911 925 aa20.76■□□□□ 0.91
VPS35-202ENST00000561713 PLS3P13797 630 aa20.76■□□□□ 0.91
VPS35-202ENST00000561713 NOLC1Q14978 699 aaKnown RBP eCLIP20.76■□□□□ 0.91
VPS35-202ENST00000561713 VARS2Q5ST30 1063 aaKnown RBP20.76■□□□□ 0.91
VPS35-202ENST00000561713 POTEHQ6S545 545 aa20.76■□□□□ 0.91
VPS35-202ENST00000561713 SYT2Q8N9I0 419 aaPredicted RBP20.76■□□□□ 0.91
VPS35-202ENST00000561713 TMEM161BQ8NDZ6 487 aa20.76■□□□□ 0.91
VPS35-202ENST00000561713 PLA2G2FQ9BZM2 168 aa20.76■□□□□ 0.91
VPS35-202ENST00000561713 TUBGCP4Q9UGJ1 667 aa20.76■□□□□ 0.91
VPS35-202ENST00000561713 KCNH3Q9ULD8 1083 aa20.76■□□□□ 0.91
VPS35-202ENST00000561713 SPTLC1O15269 473 aa20.75■□□□□ 0.91
VPS35-202ENST00000561713 SPAG1Q07617 926 aa20.75■□□□□ 0.91
VPS35-202ENST00000561713 STRN3Q13033 797 aa20.75■□□□□ 0.91
VPS35-202ENST00000561713 SLC5A9Q2M3M2 681 aa20.75■□□□□ 0.91
VPS35-202ENST00000561713 XKR4Q5GH76 650 aa20.75■□□□□ 0.91
VPS35-202ENST00000561713 ZBTB41Q5SVQ8 909 aa20.75■□□□□ 0.91
VPS35-202ENST00000561713 LARP1BQ659C4 914 aaKnown RBP20.75■□□□□ 0.91
VPS35-202ENST00000561713 ALKAL1Q6UXT8 129 aa20.75■□□□□ 0.91
VPS35-202ENST00000561713 TPRG1Q6ZUI0 275 aa20.75■□□□□ 0.91
VPS35-202ENST00000561713 GPBP1Q86WP2 473 aa20.75■□□□□ 0.91
VPS35-202ENST00000561713 ATRIPQ8WXE1 791 aa20.75■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms