RNA–Protein interactions for RNA: ENST00000559257.5

USP3-211, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 2,217 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-211ENST00000559257 ASIC3Q9UHC3 531 aa8.94□□□□□ -0.98
USP3-211ENST00000559257 FBXL5Q9UKA1 691 aa8.94□□□□□ -0.98
USP3-211ENST00000559257 ZBTB21Q9ULJ3 1066 aa8.94□□□□□ -0.98
USP3-211ENST00000559257 B3GNT3Q9Y2A9 372 aa8.94□□□□□ -0.98
USP3-211ENST00000559257 ATP11BQ9Y2G3 1177 aa8.94□□□□□ -0.98
USP3-211ENST00000559257 MYH1P12882 1939 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 LRRC72A6NJI9 287 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 DCDC2CA8MYV0 355 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 XPO1O14980 1071 aaKnown RBP8.93□□□□□ -0.98
USP3-211ENST00000559257 AREL1O15033 823 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 POLR1CO15160 346 aaPredicted RBP8.93□□□□□ -0.98
USP3-211ENST00000559257 HDAC3O15379 428 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 SIN3BO75182 1162 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 SULT1C4O75897 302 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 PLEKHA8P1O95397 391 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 TFAP2AP05549 437 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 PFKFB1P16118 471 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 PRKCAP17252 672 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 PCSK6P29122 969 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 PLTPP55058 493 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 NECTIN1Q15223 517 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 CFAP221Q4G0U5 840 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 SLX4IPQ5VYV7 408 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 KCTD20Q7Z5Y7 419 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 IFNLR1Q8IU57 520 aaPredicted RBP8.93□□□□□ -0.98
USP3-211ENST00000559257 SLC22A8Q8TCC7 542 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 AFG1LQ8WV93 481 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 SCFD1Q8WVM8 642 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 STMN2Q93045 179 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 REXO5Q96IC2 774 aaKnown RBP8.93□□□□□ -0.98
USP3-211ENST00000559257 FAR2Q96K12 515 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 INPP4AQ96PE3 977 aaPredicted RBP8.93□□□□□ -0.98
USP3-211ENST00000559257 PRMT1Q99873 361 aaKnown RBP8.93□□□□□ -0.98
USP3-211ENST00000559257 HINFPQ9BQA5 517 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 PHF20Q9BVI0 1012 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 STMN4Q9H169 189 aaPredicted RBP8.93□□□□□ -0.98
USP3-211ENST00000559257 SH2D4AQ9H788 454 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 SP140LQ9H930 580 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 KMT5AQ9NQR1 393 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 SIRT5Q9NXA8 310 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 RBMX2Q9Y388 322 aaKnown RBP8.93□□□□□ -0.98
USP3-211ENST00000559257 SEC23IPQ9Y6Y8 1000 aaKnown RBP8.93□□□□□ -0.98
USP3-211ENST00000559257 PNMA6FA0A0J9YX94 578 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 TEX33O43247 280 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 CLPTM1O96005 669 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 AGTP01019 485 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 PRLP01236 227 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 RARBP10826 455 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 CXCR2P25025 360 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 KRT20P35900 424 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 TRIM23P36406 574 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 IGHMBP2P38935 993 aaKnown RBP8.93□□□□□ -0.98
USP3-211ENST00000559257 ENTPD1P49961 510 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 YARSP54577 528 aaKnown RBP8.93□□□□□ -0.98
USP3-211ENST00000559257 VCPP55072 806 aaKnown RBP8.93□□□□□ -0.98
USP3-211ENST00000559257 S100A12P80511 92 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 IFITM2Q01629 132 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 NADK2Q4G0N4 442 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 CLVS2Q5SYC1 327 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 RNASEH2BQ5TBB1 312 aaKnown RBP8.93□□□□□ -0.98
USP3-211ENST00000559257 FAM83AQ86UY5 434 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 LRRTM3Q86VH5 581 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 TICAM1Q8IUC6 712 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 SCYL3Q8IZE3 742 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 FBXL16Q8N461 479 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 ANKLE1Q8NAG6 615 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 ACTRT2Q8TDY3 377 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 CPLX3Q8WVH0 158 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 FOXP3Q9BZS1 431 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 SENP6Q9GZR1 1112 aaPredicted RBP8.93□□□□□ -0.98
USP3-211ENST00000559257 RBM12Q9NTZ6 932 aaKnown RBP8.93□□□□□ -0.98
USP3-211ENST00000559257 STMN3Q9NZ72 180 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 EMC3Q9P0I2 261 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 TBC1D14Q9P2M4 693 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 GGT7Q9UJ14 662 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 PADI4Q9UM07 663 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 CLEC11AQ9Y240 323 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 HPSEQ9Y251 543 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 MAD1L1Q9Y6D9 718 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 KIF20BQ96Q89 1820 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 WNK3Q9BYP7 1800 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 WDR19Q8NEZ3 1342 aa8.93□□□□□ -0.98
USP3-211ENST00000559257 COL3A1P02461 1466 aaPredicted RBP8.93□□□□□ -0.98
USP3-211ENST00000559257 FAM172BPA6NC97 362 aa8.92□□□□□ -0.98
USP3-211ENST00000559257 CCDC160A6NGH7 325 aa8.92□□□□□ -0.98
USP3-211ENST00000559257 ELL2O00472 640 aaPredicted RBP8.92□□□□□ -0.98
USP3-211ENST00000559257 NDUFA2O43678 99 aa8.92□□□□□ -0.98
USP3-211ENST00000559257 KRT36O76013 467 aa8.92□□□□□ -0.98
USP3-211ENST00000559257 ITGB3P05106 788 aa8.92□□□□□ -0.98
USP3-211ENST00000559257 UQCRBP14927 111 aa8.92□□□□□ -0.98
USP3-211ENST00000559257 EPHB2P29323 1055 aa8.92□□□□□ -0.98
USP3-211ENST00000559257 POLGP54098 1239 aaPredicted RBP8.92□□□□□ -0.98
USP3-211ENST00000559257 MARSP56192 900 aaKnown RBP8.92□□□□□ -0.98
USP3-211ENST00000559257 SRP54P61011 504 aaKnown RBP8.92□□□□□ -0.98
USP3-211ENST00000559257 TMPRSS15P98073 1019 aa8.92□□□□□ -0.98
USP3-211ENST00000559257 STK38Q15208 465 aa8.92□□□□□ -0.98
USP3-211ENST00000559257 ADGRG6Q86SQ4 1221 aa8.92□□□□□ -0.98
USP3-211ENST00000559257 GLRX5Q86SX6 157 aa8.92□□□□□ -0.98
USP3-211ENST00000559257 ZNF410Q86VK4 478 aa8.92□□□□□ -0.98
USP3-211ENST00000559257 VSIG1Q86XK7 387 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms