RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 AP3M2P53677 418 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 CORO7P57737 925 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 ZNF211Q13398 564 aaPredicted RBP7.77□□□□□ -1.17
VPS13C-206ENST00000558338 SLMAPQ14BN4 828 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 TRADDQ15628 312 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 MTERF2Q49AM1 385 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 LIN9Q5TKA1 542 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 NAA35Q5VZE5 725 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 FAM160B1Q5W0V3 765 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 DENND2CQ68D51 928 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 KCTD16Q68DU8 428 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 C15orf39Q6ZRI6 1047 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 ARMC9Q7Z3E5 817 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 DDX42Q86XP3 938 aaKnown RBP eCLIP7.77□□□□□ -1.17
VPS13C-206ENST00000558338 SLC13A5Q86YT5 568 aaPredicted RBP7.77□□□□□ -1.17
VPS13C-206ENST00000558338 CCDC60Q8IWA6 550 aaPredicted RBP7.77□□□□□ -1.17
VPS13C-206ENST00000558338 SH2D3CQ8N5H7 860 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 ZSWIM2Q8NEG5 633 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 GRK7Q8WTQ7 553 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 DDX1Q92499 740 aaKnown RBP7.77□□□□□ -1.17
VPS13C-206ENST00000558338 SLCO2A1Q92959 643 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 MPHOSPH6Q99547 160 aaKnown RBP7.77□□□□□ -1.17
VPS13C-206ENST00000558338 SH2D3AQ9BRG2 576 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 FAM213AQ9BRX8 229 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 TRIM51Q9BSJ1 452 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 PAGR1Q9BTK6 254 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 TXLNGYQ9BZA5 131 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 CELF4Q9BZC1 486 aaKnown RBP7.77□□□□□ -1.17
VPS13C-206ENST00000558338 PPP1R12CQ9BZL4 782 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 NEUROG2Q9H2A3 272 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 TMEM134Q9H6X4 195 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 XPNPEP1Q9NQW7 623 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 ZNF302Q9NR11 478 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 CNOT8Q9UFF9 292 aaKnown RBP7.77□□□□□ -1.17
VPS13C-206ENST00000558338 MAFBQ9Y5Q3 323 aaPredicted RBP7.77□□□□□ -1.17
VPS13C-206ENST00000558338 GJA3Q9Y6H8 435 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 ZNFX1Q9P2E3 1918 aaKnown RBP7.77□□□□□ -1.17
VPS13C-206ENST00000558338 ADGRA3Q8IWK6 1321 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 GAS2O43903 313 aaKnown RBP7.77□□□□□ -1.17
VPS13C-206ENST00000558338 EGFRP00533 1210 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 MAPK4P31152 587 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 LSP1P33241 339 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 PTGIRP43119 386 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 MAGEA9P43362 315 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 NSFP46459 744 aaKnown RBP7.77□□□□□ -1.17
VPS13C-206ENST00000558338 CCT5P48643 541 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 ATP1A2P50993 1020 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 PMS2P54278 862 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 PTP4A2Q12974 167 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 PDCLQ13371 301 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 KRT71Q3SY84 523 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 ZACNQ401N2 412 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 CCDC137Q6PK04 289 aaKnown RBP7.77□□□□□ -1.17
VPS13C-206ENST00000558338 PRELID2Q8N945 189 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 PSPC1Q8WXF1 523 aaKnown RBP7.77□□□□□ -1.17
VPS13C-206ENST00000558338 SLC7A3Q8WY07 619 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 KRT35Q92764 455 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 KLRG1Q96E93 195 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 WNK4Q96J92 1243 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 VCPIP1Q96JH7 1222 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 FAM167AQ96KS9 214 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 CGRRF1Q99675 332 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 NIFKQ9BYG3 293 aaKnown RBP7.77□□□□□ -1.17
VPS13C-206ENST00000558338 MTFR1LQ9H019 292 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 PORCNQ9H237 461 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 PABPC3Q9H361 631 aaKnown RBP7.77□□□□□ -1.17
VPS13C-206ENST00000558338 DHX33Q9H6R0 707 aaKnown RBP7.77□□□□□ -1.17
VPS13C-206ENST00000558338 ERVK-5Q9HDB9 667 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 TOPORSQ9NS56 1045 aaPredicted RBP7.77□□□□□ -1.17
VPS13C-206ENST00000558338 HOMER3Q9NSC5 361 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 ZDHHC18Q9NUE0 388 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 FEZ2Q9UHY8 353 aaPredicted RBP7.77□□□□□ -1.17
VPS13C-206ENST00000558338 GGA2Q9UJY4 613 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 AGO2Q9UKV8 859 aaKnown RBP7.77□□□□□ -1.17
VPS13C-206ENST00000558338 SCINQ9Y6U3 715 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 LCTP09848 1927 aa7.76□□□□□ -1.17
VPS13C-206ENST00000558338 DOCK5Q9H7D0 1870 aa7.76□□□□□ -1.17
VPS13C-206ENST00000558338 SPDYE16A6NNV3 312 aaPredicted RBP7.76□□□□□ -1.17
VPS13C-206ENST00000558338 MYO1FO00160 1098 aa7.76□□□□□ -1.17
VPS13C-206ENST00000558338 PSTPIP1O43586 416 aa7.76□□□□□ -1.17
VPS13C-206ENST00000558338 RGS20O76081 388 aa7.76□□□□□ -1.17
VPS13C-206ENST00000558338 KIAA0754O94854 1291 aa7.76□□□□□ -1.17
VPS13C-206ENST00000558338 ECEL1O95672 775 aa7.76□□□□□ -1.17
VPS13C-206ENST00000558338 HLA-DRAP01903 254 aa7.76□□□□□ -1.17
VPS13C-206ENST00000558338 UNGP13051 313 aaPredicted RBP7.76□□□□□ -1.17
VPS13C-206ENST00000558338 TNNI1P19237 187 aa7.76□□□□□ -1.17
VPS13C-206ENST00000558338 COILP38432 576 aaPredicted RBP7.76□□□□□ -1.17
VPS13C-206ENST00000558338 PPP2R2AP63151 447 aa7.76□□□□□ -1.17
VPS13C-206ENST00000558338 CENPCQ03188 943 aa7.76□□□□□ -1.17
VPS13C-206ENST00000558338 SLC20A2Q08357 652 aa7.76□□□□□ -1.17
VPS13C-206ENST00000558338 ADCY2Q08462 1091 aa7.76□□□□□ -1.17
VPS13C-206ENST00000558338 CALCOCO2Q13137 446 aa7.76□□□□□ -1.17
VPS13C-206ENST00000558338 GRM1Q13255 1194 aa7.76□□□□□ -1.17
VPS13C-206ENST00000558338 PTGISQ16647 500 aa7.76□□□□□ -1.17
VPS13C-206ENST00000558338 ODF2Q5BJF6 829 aa7.76□□□□□ -1.17
VPS13C-206ENST00000558338 ANGEL2Q5VTE6 544 aaKnown RBP7.76□□□□□ -1.17
VPS13C-206ENST00000558338 POTEAQ6S8J7 498 aa7.76□□□□□ -1.17
VPS13C-206ENST00000558338 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.76□□□□□ -1.17
VPS13C-206ENST00000558338 CEP128Q6ZU80 1094 aa7.76□□□□□ -1.17
VPS13C-206ENST00000558338 TAS1R3Q7RTX0 852 aa7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms