RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 GUCY2DQ02846 1103 aa8.22□□□□□ -1.09
LIMA1-216ENST00000552909 CYP4A11Q02928 519 aa8.22□□□□□ -1.09
LIMA1-216ENST00000552909 BYSLQ13895 437 aaKnown RBP8.22□□□□□ -1.09
LIMA1-216ENST00000552909 ZNF484Q5JVG2 852 aa8.22□□□□□ -1.09
LIMA1-216ENST00000552909 TAF2Q6P1X5 1199 aa8.22□□□□□ -1.09
LIMA1-216ENST00000552909 PSRC1Q6PGN9 363 aaPredicted RBP8.22□□□□□ -1.09
LIMA1-216ENST00000552909 LRIG3Q6UXM1 1119 aa8.22□□□□□ -1.09
LIMA1-216ENST00000552909 ANO5Q75V66 913 aa8.22□□□□□ -1.09
LIMA1-216ENST00000552909 TMCO2Q7Z6W1 182 aaPredicted RBP8.22□□□□□ -1.09
LIMA1-216ENST00000552909 CPLX4Q7Z7G2 160 aa8.22□□□□□ -1.09
LIMA1-216ENST00000552909 SLFN12Q8IYM2 578 aa8.22□□□□□ -1.09
LIMA1-216ENST00000552909 KIAA0319LQ8IZA0 1049 aa8.22□□□□□ -1.09
LIMA1-216ENST00000552909 CCDC63Q8NA47 563 aa8.22□□□□□ -1.09
LIMA1-216ENST00000552909 DBF4BQ8NFT6 615 aa8.22□□□□□ -1.09
LIMA1-216ENST00000552909 RDM1Q8NG50 284 aa8.22□□□□□ -1.09
LIMA1-216ENST00000552909 STAMQ92783 540 aa8.22□□□□□ -1.09
LIMA1-216ENST00000552909 DYDC2Q96IM9 177 aa8.22□□□□□ -1.09
LIMA1-216ENST00000552909 PPP1R16BQ96T49 567 aa8.22□□□□□ -1.09
LIMA1-216ENST00000552909 RAB34Q9BZG1 259 aa8.22□□□□□ -1.09
LIMA1-216ENST00000552909 CCSER1Q9C0I3 900 aa8.22□□□□□ -1.09
LIMA1-216ENST00000552909 CDHR5Q9HBB8 845 aa8.22□□□□□ -1.09
LIMA1-216ENST00000552909 EPB41L5Q9HCM4 733 aa8.22□□□□□ -1.09
LIMA1-216ENST00000552909 SMARCAL1Q9NZC9 954 aa8.22□□□□□ -1.09
LIMA1-216ENST00000552909 SLC12A6Q9UHW9 1150 aa8.22□□□□□ -1.09
LIMA1-216ENST00000552909 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.22□□□□□ -1.09
LIMA1-216ENST00000552909 PCDHA2Q9Y5H9 948 aa8.22□□□□□ -1.09
LIMA1-216ENST00000552909 CAPN6Q9Y6Q1 641 aa8.22□□□□□ -1.09
LIMA1-216ENST00000552909 ZBBXA8MT70 800 aa8.22□□□□□ -1.09
LIMA1-216ENST00000552909 SLITRK3O94933 977 aa8.22□□□□□ -1.09
LIMA1-216ENST00000552909 CXCL10P02778 98 aa8.22□□□□□ -1.09
LIMA1-216ENST00000552909 FESP07332 822 aa8.22□□□□□ -1.09
LIMA1-216ENST00000552909 GLI1P08151 1106 aa8.22□□□□□ -1.09
LIMA1-216ENST00000552909 GSTA1P08263 222 aa8.22□□□□□ -1.09
LIMA1-216ENST00000552909 NEFHP12036 1026 aa8.22□□□□□ -1.09
LIMA1-216ENST00000552909 RFC2P35250 354 aa8.22□□□□□ -1.09
LIMA1-216ENST00000552909 PBX2P40425 430 aa8.22□□□□□ -1.09
LIMA1-216ENST00000552909 STAT6P42226 847 aa8.22□□□□□ -1.09
LIMA1-216ENST00000552909 NPEPPSP55786 919 aa8.22□□□□□ -1.09
LIMA1-216ENST00000552909 MGAT3Q09327 533 aa8.22□□□□□ -1.09
LIMA1-216ENST00000552909 CTTNQ14247 550 aaKnown RBP8.22□□□□□ -1.09
LIMA1-216ENST00000552909 CFAP221Q4G0U5 840 aa8.22□□□□□ -1.09
LIMA1-216ENST00000552909 PLA2G4FQ68DD2 849 aa8.22□□□□□ -1.09
LIMA1-216ENST00000552909 Q7L0L9 218 aa8.22□□□□□ -1.09
LIMA1-216ENST00000552909 LRRC71Q8N4P6 559 aa8.22□□□□□ -1.09
LIMA1-216ENST00000552909 METTL13Q8N6R0 699 aa8.22□□□□□ -1.09
LIMA1-216ENST00000552909 PSMB7Q99436 277 aa8.22□□□□□ -1.09
LIMA1-216ENST00000552909 PYM1Q9BRP8 204 aaKnown RBP8.22□□□□□ -1.09
LIMA1-216ENST00000552909 MMTAG2Q9BU76 263 aaKnown RBP8.22□□□□□ -1.09
LIMA1-216ENST00000552909 YIPF3Q9GZM5 350 aa8.22□□□□□ -1.09
LIMA1-216ENST00000552909 PLCB1Q9NQ66 1216 aa8.22□□□□□ -1.09
LIMA1-216ENST00000552909 EHD2Q9NZN4 543 aa8.22□□□□□ -1.09
LIMA1-216ENST00000552909 CDY2AQ9Y6F7 541 aa8.22□□□□□ -1.09
LIMA1-216ENST00000552909 SMIM35A0A1B0GVV1 85 aa8.21□□□□□ -1.09
LIMA1-216ENST00000552909 ESYT3A0FGR9 886 aa8.21□□□□□ -1.09
LIMA1-216ENST00000552909 CFAP73A6NFT4 308 aa8.21□□□□□ -1.09
LIMA1-216ENST00000552909 LUC7L3O95232 432 aaKnown RBP8.21□□□□□ -1.09
LIMA1-216ENST00000552909 MOCS3O95396 460 aa8.21□□□□□ -1.09
LIMA1-216ENST00000552909 VTNP04004 478 aa8.21□□□□□ -1.09
LIMA1-216ENST00000552909 P4HBP07237 508 aaKnown RBP8.21□□□□□ -1.09
LIMA1-216ENST00000552909 PAEPP09466 180 aa8.21□□□□□ -1.09
LIMA1-216ENST00000552909 CLTAP09496 248 aa8.21□□□□□ -1.09
LIMA1-216ENST00000552909 TRIM21P19474 475 aaKnown RBP8.21□□□□□ -1.09
LIMA1-216ENST00000552909 EEF1GP26641 437 aaKnown RBP8.21□□□□□ -1.09
LIMA1-216ENST00000552909 CXCR5P32302 372 aa8.21□□□□□ -1.09
LIMA1-216ENST00000552909 HSPA9P38646 679 aaKnown RBP8.21□□□□□ -1.09
LIMA1-216ENST00000552909 QARSP47897 775 aaKnown RBP8.21□□□□□ -1.09
LIMA1-216ENST00000552909 CLCN3P51790 818 aa8.21□□□□□ -1.09
LIMA1-216ENST00000552909 PSMC5P62195 406 aa8.21□□□□□ -1.09
LIMA1-216ENST00000552909 PPP2R2AP63151 447 aa8.21□□□□□ -1.09
LIMA1-216ENST00000552909 ZBED6P86452 979 aa8.21□□□□□ -1.09
LIMA1-216ENST00000552909 BIRC3Q13489 604 aa8.21□□□□□ -1.09
LIMA1-216ENST00000552909 EPHA7Q15375 998 aa8.21□□□□□ -1.09
LIMA1-216ENST00000552909 TARBP2Q15633 366 aaKnown RBP8.21□□□□□ -1.09
LIMA1-216ENST00000552909 SLC5A9Q2M3M2 681 aa8.21□□□□□ -1.09
LIMA1-216ENST00000552909 MTERF2Q49AM1 385 aa8.21□□□□□ -1.09
LIMA1-216ENST00000552909 ODF2Q5BJF6 829 aa8.21□□□□□ -1.09
LIMA1-216ENST00000552909 XKR3Q5GH77 459 aa8.21□□□□□ -1.09
LIMA1-216ENST00000552909 FAM26DQ5JW98 314 aa8.21□□□□□ -1.09
LIMA1-216ENST00000552909 THEMIS2Q5TEJ8 643 aa8.21□□□□□ -1.09
LIMA1-216ENST00000552909 KRT79Q5XKE5 535 aa8.21□□□□□ -1.09
LIMA1-216ENST00000552909 SLC30A9Q6PML9 568 aa8.21□□□□□ -1.09
LIMA1-216ENST00000552909 RAPGEF5Q92565 580 aa8.21□□□□□ -1.09
LIMA1-216ENST00000552909 CALML4Q96GE6 196 aa8.21□□□□□ -1.09
LIMA1-216ENST00000552909 ZNF668Q96K58 619 aaPredicted RBP8.21□□□□□ -1.09
LIMA1-216ENST00000552909 CCDC42Q96M95 316 aa8.21□□□□□ -1.09
LIMA1-216ENST00000552909 ZNF570Q96NI8 536 aa8.21□□□□□ -1.09
LIMA1-216ENST00000552909 HSD17B14Q9BPX1 270 aa8.21□□□□□ -1.09
LIMA1-216ENST00000552909 EIF2AK1Q9BQI3 630 aaKnown RBP8.21□□□□□ -1.09
LIMA1-216ENST00000552909 LXNQ9BS40 222 aa8.21□□□□□ -1.09
LIMA1-216ENST00000552909 AGO3Q9H9G7 860 aaKnown RBP8.21□□□□□ -1.09
LIMA1-216ENST00000552909 NRBP2Q9NSY0 501 aa8.21□□□□□ -1.09
LIMA1-216ENST00000552909 SEPT9Q9UHD8 586 aaPredicted RBP8.21□□□□□ -1.09
LIMA1-216ENST00000552909 GINS2Q9Y248 185 aa8.21□□□□□ -1.09
LIMA1-216ENST00000552909 PTPRSQ13332 1948 aa8.21□□□□□ -1.1
LIMA1-216ENST00000552909 GBF1Q92538 1859 aa8.21□□□□□ -1.1
LIMA1-216ENST00000552909 CCT8L1PA6NM43 557 aa8.21□□□□□ -1.1
LIMA1-216ENST00000552909 CAND2O75155 1236 aa8.21□□□□□ -1.1
LIMA1-216ENST00000552909 PFKMP08237 780 aa8.21□□□□□ -1.1
LIMA1-216ENST00000552909 MYOGP15173 224 aa8.21□□□□□ -1.1
LIMA1-216ENST00000552909 PLCG1P19174 1290 aa8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms