RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 KCNK9Q9NPC2 374 aa8□□□□□ -1.13
LIMA1-213ENST00000552720 PXMP2Q9NR77 195 aa8□□□□□ -1.13
LIMA1-213ENST00000552720 TBC1D22BQ9NU19 505 aa8□□□□□ -1.13
LIMA1-213ENST00000552720 SAMD15Q9P1V8 674 aa8□□□□□ -1.13
LIMA1-213ENST00000552720 USTQ9Y2C2 406 aa8□□□□□ -1.13
LIMA1-213ENST00000552720 DNAJC8O75937 253 aaPredicted RBP7.99□□□□□ -1.13
LIMA1-213ENST00000552720 UBOX5O94941 541 aa7.99□□□□□ -1.13
LIMA1-213ENST00000552720 GHRP10912 638 aa7.99□□□□□ -1.13
LIMA1-213ENST00000552720 TCF4P15884 667 aa7.99□□□□□ -1.13
LIMA1-213ENST00000552720 CD58P19256 250 aa7.99□□□□□ -1.13
LIMA1-213ENST00000552720 GBP1P32455 592 aa7.99□□□□□ -1.13
LIMA1-213ENST00000552720 NF2P35240 595 aa7.99□□□□□ -1.13
LIMA1-213ENST00000552720 ADCY8P40145 1251 aa7.99□□□□□ -1.13
LIMA1-213ENST00000552720 ACOT2P49753 483 aa7.99□□□□□ -1.13
LIMA1-213ENST00000552720 NUBP1P53384 320 aa7.99□□□□□ -1.13
LIMA1-213ENST00000552720 ELF3P78545 371 aaPredicted RBP7.99□□□□□ -1.13
LIMA1-213ENST00000552720 ATP13A4Q4VNC1 1196 aa7.99□□□□□ -1.13
LIMA1-213ENST00000552720 HP1BP3Q5SSJ5 553 aaPredicted RBP7.99□□□□□ -1.13
LIMA1-213ENST00000552720 NUGGCQ68CJ6 796 aa7.99□□□□□ -1.13
LIMA1-213ENST00000552720 MFSD5Q6N075 450 aa7.99□□□□□ -1.13
LIMA1-213ENST00000552720 TRPM8Q7Z2W7 1104 aa7.99□□□□□ -1.13
LIMA1-213ENST00000552720 TBC1D1Q86TI0 1168 aaPredicted RBP7.99□□□□□ -1.13
LIMA1-213ENST00000552720 GPD1LQ8N335 351 aa7.99□□□□□ -1.13
LIMA1-213ENST00000552720 ANKS4BQ8N8V4 417 aa7.99□□□□□ -1.13
LIMA1-213ENST00000552720 GLIS1Q8NBF1 620 aa7.99□□□□□ -1.13
LIMA1-213ENST00000552720 TCP11Q8WWU5 503 aa7.99□□□□□ -1.13
LIMA1-213ENST00000552720 KIFAP3Q92845 792 aa7.99□□□□□ -1.13
LIMA1-213ENST00000552720 BICD1Q96G01 975 aa7.99□□□□□ -1.13
LIMA1-213ENST00000552720 SNF8Q96H20 258 aa7.99□□□□□ -1.13
LIMA1-213ENST00000552720 HAPLN2Q9GZV7 340 aa7.99□□□□□ -1.13
LIMA1-213ENST00000552720 CCDC134Q9H6E4 229 aa7.99□□□□□ -1.13
LIMA1-213ENST00000552720 XPNPEP1Q9NQW7 623 aa7.99□□□□□ -1.13
LIMA1-213ENST00000552720 NINJ2Q9NZG7 142 aa7.99□□□□□ -1.13
LIMA1-213ENST00000552720 WHRNQ9P202 907 aa7.99□□□□□ -1.13
LIMA1-213ENST00000552720 KAT6AQ92794 2004 aa7.99□□□□□ -1.13
LIMA1-213ENST00000552720 RLFQ13129 1914 aa7.99□□□□□ -1.13
LIMA1-213ENST00000552720 PI4K2BG5E9Z4 385 aa7.98□□□□□ -1.13
LIMA1-213ENST00000552720 WNT10BO00744 389 aa7.98□□□□□ -1.13
LIMA1-213ENST00000552720 THAP12O43422 761 aa7.98□□□□□ -1.13
LIMA1-213ENST00000552720 TBC1D12O60347 775 aa7.98□□□□□ -1.13
LIMA1-213ENST00000552720 SNX3O60493 162 aa7.98□□□□□ -1.13
LIMA1-213ENST00000552720 STBD1O95210 358 aa7.98□□□□□ -1.13
LIMA1-213ENST00000552720 TTC4O95801 387 aa7.98□□□□□ -1.13
LIMA1-213ENST00000552720 NLRP11P59045 1033 aaKnown RBP7.98□□□□□ -1.13
LIMA1-213ENST00000552720 PTK6Q13882 451 aa7.98□□□□□ -1.13
LIMA1-213ENST00000552720 BAATQ14032 418 aaPredicted RBP7.98□□□□□ -1.13
LIMA1-213ENST00000552720 ITIH4Q14624 930 aa7.98□□□□□ -1.13
LIMA1-213ENST00000552720 SEZ6Q53EL9 994 aa7.98□□□□□ -1.13
LIMA1-213ENST00000552720 ZBTB41Q5SVQ8 909 aa7.98□□□□□ -1.13
LIMA1-213ENST00000552720 ARHGEF16Q5VV41 709 aa7.98□□□□□ -1.13
LIMA1-213ENST00000552720 SWSAP1Q6NVH7 229 aa7.98□□□□□ -1.13
LIMA1-213ENST00000552720 TRMT10CQ7L0Y3 403 aaKnown RBP7.98□□□□□ -1.13
LIMA1-213ENST00000552720 TAOK1Q7L7X3 1001 aa7.98□□□□□ -1.13
LIMA1-213ENST00000552720 MCF2L2Q86YR7 1114 aa7.98□□□□□ -1.13
LIMA1-213ENST00000552720 TEX2Q8IWB9 1127 aa7.98□□□□□ -1.13
LIMA1-213ENST00000552720 ZBTB45Q96K62 511 aaPredicted RBP7.98□□□□□ -1.13
LIMA1-213ENST00000552720 RUNDC3BQ96NL0 473 aa7.98□□□□□ -1.13
LIMA1-213ENST00000552720 IWS1Q96ST2 819 aa7.98□□□□□ -1.13
LIMA1-213ENST00000552720 ADAM33Q9BZ11 813 aa7.98□□□□□ -1.13
LIMA1-213ENST00000552720 SEPT9Q9UHD8 586 aaPredicted RBP7.98□□□□□ -1.13
LIMA1-213ENST00000552720 FZD1Q9UP38 647 aa7.98□□□□□ -1.13
LIMA1-213ENST00000552720 SLC12A4Q9UP95 1085 aa7.98□□□□□ -1.13
LIMA1-213ENST00000552720 EXOC7Q9UPT5 735 aa7.98□□□□□ -1.13
LIMA1-213ENST00000552720 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.98□□□□□ -1.13
LIMA1-213ENST00000552720 LCTP09848 1927 aa7.98□□□□□ -1.13
LIMA1-213ENST00000552720 PLSCR1O15162 318 aa7.98□□□□□ -1.13
LIMA1-213ENST00000552720 WDR46O15213 610 aaKnown RBP7.98□□□□□ -1.13
LIMA1-213ENST00000552720 OAS1P00973 400 aaKnown RBP7.98□□□□□ -1.13
LIMA1-213ENST00000552720 CLTAP09496 248 aa7.98□□□□□ -1.13
LIMA1-213ENST00000552720 ZSCAN5DPP0CG00 497 aa7.98□□□□□ -1.13
LIMA1-213ENST00000552720 FDX1P10109 184 aa7.98□□□□□ -1.13
LIMA1-213ENST00000552720 KRT10P13645 584 aa7.98□□□□□ -1.13
LIMA1-213ENST00000552720 ETS1P14921 441 aa7.98□□□□□ -1.13
LIMA1-213ENST00000552720 BRAFP15056 766 aa7.98□□□□□ -1.13
LIMA1-213ENST00000552720 ATF2P15336 505 aa7.98□□□□□ -1.13
LIMA1-213ENST00000552720 TNNI1P19237 187 aa7.98□□□□□ -1.13
LIMA1-213ENST00000552720 ITIH2P19823 946 aa7.98□□□□□ -1.13
LIMA1-213ENST00000552720 SSR1P43307 286 aaKnown RBP7.98□□□□□ -1.13
LIMA1-213ENST00000552720 KCNJ2P63252 427 aa7.98□□□□□ -1.13
LIMA1-213ENST00000552720 KLF1Q13351 362 aaPredicted RBP7.98□□□□□ -1.13
LIMA1-213ENST00000552720 MTMR2Q13614 643 aa7.98□□□□□ -1.13
LIMA1-213ENST00000552720 TDRD10Q5VZ19 366 aaKnown RBP7.98□□□□□ -1.13
LIMA1-213ENST00000552720 PNMA8AQ86V59 439 aaPredicted RBP7.98□□□□□ -1.13
LIMA1-213ENST00000552720 CCDC60Q8IWA6 550 aaPredicted RBP7.98□□□□□ -1.13
LIMA1-213ENST00000552720 TMC2Q8TDI7 906 aa7.98□□□□□ -1.13
LIMA1-213ENST00000552720 SLCO2A1Q92959 643 aa7.98□□□□□ -1.13
LIMA1-213ENST00000552720 ACSF2Q96CM8 615 aaPredicted RBP7.98□□□□□ -1.13
LIMA1-213ENST00000552720 TBC1D31Q96DN5 1066 aa7.98□□□□□ -1.13
LIMA1-213ENST00000552720 ATG4CQ96DT6 458 aa7.98□□□□□ -1.13
LIMA1-213ENST00000552720 THOC1Q96FV9 657 aaKnown RBP7.98□□□□□ -1.13
LIMA1-213ENST00000552720 MOV10L1Q9BXT6 1211 aaKnown RBP7.98□□□□□ -1.13
LIMA1-213ENST00000552720 APOBEC3GQ9HC16 384 aaKnown RBP7.98□□□□□ -1.13
LIMA1-213ENST00000552720 C1orf112Q9NSG2 853 aa7.98□□□□□ -1.13
LIMA1-213ENST00000552720 ANKEF1Q9NU02 776 aa7.98□□□□□ -1.13
LIMA1-213ENST00000552720 BAIAP2L1Q9UHR4 511 aa7.98□□□□□ -1.13
LIMA1-213ENST00000552720 ANAPC5Q9UJX4 755 aa7.98□□□□□ -1.13
LIMA1-213ENST00000552720 PNMA3Q9UL41 463 aa7.98□□□□□ -1.13
LIMA1-213ENST00000552720 NEU2Q9Y3R4 380 aa7.98□□□□□ -1.13
LIMA1-213ENST00000552720 ZNF541Q9H0D2 1346 aa7.98□□□□□ -1.13
LIMA1-213ENST00000552720 MGRN1O60291 552 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms