RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 USP37Q86T82 979 aa22.92■■□□□ 1.26
VPS29-206ENST00000549578 LUZP1Q86V48 1076 aa22.92■■□□□ 1.26
VPS29-206ENST00000549578 MMRN2Q9H8L6 949 aa22.92■■□□□ 1.26
VPS29-206ENST00000549578 CHD9Q3L8U1 2897 aa22.92■■□□□ 1.26
VPS29-206ENST00000549578 SMTNL1A8MU46 457 aa22.92■■□□□ 1.26
VPS29-206ENST00000549578 BECN2A8MW95 431 aa22.92■■□□□ 1.26
VPS29-206ENST00000549578 DNAJB2P25686 324 aa22.92■■□□□ 1.26
VPS29-206ENST00000549578 OR1G1P47890 313 aa22.92■■□□□ 1.26
VPS29-206ENST00000549578 SLC11A1P49279 550 aa22.92■■□□□ 1.26
VPS29-206ENST00000549578 BCAR1P56945 870 aa22.92■■□□□ 1.26
VPS29-206ENST00000549578 DUOXA2Q1HG44 320 aa22.92■■□□□ 1.26
VPS29-206ENST00000549578 CDKAL1Q5VV42 579 aa22.92■■□□□ 1.26
VPS29-206ENST00000549578 SCARA3Q6AZY7 606 aa22.92■■□□□ 1.26
VPS29-206ENST00000549578 FAM114A1Q8IWE2 563 aa22.92■■□□□ 1.26
VPS29-206ENST00000549578 TRIM59Q8IWR1 403 aa22.92■■□□□ 1.26
VPS29-206ENST00000549578 C1orf127Q8N9H9 656 aa22.92■■□□□ 1.26
VPS29-206ENST00000549578 FAM200AQ8TCP9 573 aa22.92■■□□□ 1.26
VPS29-206ENST00000549578 CACTINQ8WUQ7 758 aaKnown RBP22.92■■□□□ 1.26
VPS29-206ENST00000549578 CLP1Q92989 425 aaKnown RBP22.92■■□□□ 1.26
VPS29-206ENST00000549578 ANKRD36BP1Q96IX9 119 aa22.92■■□□□ 1.26
VPS29-206ENST00000549578 HSD3B7Q9H2F3 369 aa22.92■■□□□ 1.26
VPS29-206ENST00000549578 DPP3Q9NY33 737 aa22.92■■□□□ 1.26
VPS29-206ENST00000549578 MAGEC2Q9UBF1 373 aaPredicted RBP22.92■■□□□ 1.26
VPS29-206ENST00000549578 PRG3Q9Y2Y8 225 aaPredicted RBP22.92■■□□□ 1.26
VPS29-206ENST00000549578 KCNJ18B7U540 433 aa22.91■■□□□ 1.26
VPS29-206ENST00000549578 NT5C1B-RDH14C9J2C7 533 aa22.91■■□□□ 1.26
VPS29-206ENST00000549578 F8W810 466 aa22.91■■□□□ 1.26
VPS29-206ENST00000549578 TNNC2P02585 160 aa22.91■■□□□ 1.26
VPS29-206ENST00000549578 GALTP07902 379 aa22.91■■□□□ 1.26
VPS29-206ENST00000549578 LAG3P18627 525 aa22.91■■□□□ 1.26
VPS29-206ENST00000549578 CYP3A5P20815 502 aa22.91■■□□□ 1.26
VPS29-206ENST00000549578 GCLMP48507 274 aa22.91■■□□□ 1.26
VPS29-206ENST00000549578 CLCNKBP51801 687 aa22.91■■□□□ 1.26
VPS29-206ENST00000549578 MCCD1P59942 119 aaPredicted RBP22.91■■□□□ 1.26
VPS29-206ENST00000549578 TAP1Q03518 808 aa22.91■■□□□ 1.26
VPS29-206ENST00000549578 ENPEPQ07075 957 aa22.91■■□□□ 1.26
VPS29-206ENST00000549578 PPP3CAQ08209 521 aa22.91■■□□□ 1.26
VPS29-206ENST00000549578 KCNJ12Q14500 433 aa22.91■■□□□ 1.26
VPS29-206ENST00000549578 COLGALT1Q8NBJ5 622 aa22.91■■□□□ 1.26
VPS29-206ENST00000549578 SLC35C1Q96A29 364 aa22.91■■□□□ 1.26
VPS29-206ENST00000549578 TMEM175Q9BSA9 504 aa22.91■■□□□ 1.26
VPS29-206ENST00000549578 NRP1O14786 923 aa22.9■■□□□ 1.26
VPS29-206ENST00000549578 IGFBP6P24592 240 aaPredicted RBP22.9■■□□□ 1.26
VPS29-206ENST00000549578 MTIF2P46199 727 aaKnown RBP22.9■■□□□ 1.26
VPS29-206ENST00000549578 KCNT2Q6UVM3 1135 aa22.9■■□□□ 1.26
VPS29-206ENST00000549578 ZNF558Q96NG5 402 aa22.9■■□□□ 1.26
VPS29-206ENST00000549578 C17orf80Q9BSJ5 609 aa22.9■■□□□ 1.26
VPS29-206ENST00000549578 MTUS1Q9ULD2 1270 aa22.9■■□□□ 1.26
VPS29-206ENST00000549578 PODXLO00592 558 aa22.89■■□□□ 1.26
VPS29-206ENST00000549578 PPEF2O14830 753 aa22.89■■□□□ 1.26
VPS29-206ENST00000549578 ALDH2P05091 517 aa22.89■■□□□ 1.26
VPS29-206ENST00000549578 ITGB3P05106 788 aa22.89■■□□□ 1.26
VPS29-206ENST00000549578 LRPAP1P30533 357 aa22.89■■□□□ 1.26
VPS29-206ENST00000549578 ALDH7A1P49419 539 aaKnown RBP22.89■■□□□ 1.26
VPS29-206ENST00000549578 UPP1Q16831 310 aa22.89■■□□□ 1.26
VPS29-206ENST00000549578 TCP11X2Q5H9J9 407 aa22.89■■□□□ 1.26
VPS29-206ENST00000549578 TDRD10Q5VZ19 366 aaKnown RBP22.89■■□□□ 1.26
VPS29-206ENST00000549578 PPP2R2DQ66LE6 453 aa22.89■■□□□ 1.26
VPS29-206ENST00000549578 TRAPPC11Q7Z392 1133 aa22.89■■□□□ 1.26
VPS29-206ENST00000549578 TMEM173Q86WV6 379 aaPredicted RBP22.89■■□□□ 1.26
VPS29-206ENST00000549578 RNF214Q8ND24 703 aa22.89■■□□□ 1.26
VPS29-206ENST00000549578 TIFAQ96CG3 184 aa22.89■■□□□ 1.26
VPS29-206ENST00000549578 UROC1Q96N76 676 aa22.89■■□□□ 1.26
VPS29-206ENST00000549578 FAN1Q9Y2M0 1017 aa22.89■■□□□ 1.26
VPS29-206ENST00000549578 UTP18Q9Y5J1 556 aaKnown RBP eCLIP22.89■■□□□ 1.26
VPS29-206ENST00000549578 CHD7Q9P2D1 2997 aa22.89■■□□□ 1.25
VPS29-206ENST00000549578 NLRC5Q86WI3 1866 aa22.89■■□□□ 1.25
VPS29-206ENST00000549578 C4BPAP04003 597 aaKnown RBP22.88■■□□□ 1.25
VPS29-206ENST00000549578 ZNF18P17022 549 aa22.88■■□□□ 1.25
VPS29-206ENST00000549578 CTNNB1P35222 781 aa22.88■■□□□ 1.25
VPS29-206ENST00000549578 BIRC3Q13489 604 aa22.88■■□□□ 1.25
VPS29-206ENST00000549578 C9orf57Q5W0N0 161 aa22.88■■□□□ 1.25
VPS29-206ENST00000549578 SV2AQ7L0J3 742 aa22.88■■□□□ 1.25
VPS29-206ENST00000549578 C3orf58Q8NDZ4 430 aa22.88■■□□□ 1.25
VPS29-206ENST00000549578 CXorf38Q8TB03 319 aa22.88■■□□□ 1.25
VPS29-206ENST00000549578 HASPINQ8TF76 798 aa22.88■■□□□ 1.25
VPS29-206ENST00000549578 SLC28A3Q9HAS3 691 aa22.88■■□□□ 1.25
VPS29-206ENST00000549578 AAASQ9NRG9 546 aa22.88■■□□□ 1.25
VPS29-206ENST00000549578 SIX4Q9UIU6 781 aa22.88■■□□□ 1.25
VPS29-206ENST00000549578 ITGA11Q9UKX5 1188 aa22.88■■□□□ 1.25
VPS29-206ENST00000549578 GTF3C5Q9Y5Q8 519 aaPredicted RBP22.88■■□□□ 1.25
VPS29-206ENST00000549578 KIF4AO95239 1232 aa22.87■■□□□ 1.25
VPS29-206ENST00000549578 ITGB1P05556 798 aa22.87■■□□□ 1.25
VPS29-206ENST00000549578 KRT19P08727 400 aa22.87■■□□□ 1.25
VPS29-206ENST00000549578 EEF1GP26641 437 aaKnown RBP22.87■■□□□ 1.25
VPS29-206ENST00000549578 POLR2BP30876 1174 aaKnown RBP22.87■■□□□ 1.25
VPS29-206ENST00000549578 RPL9P32969 192 aaKnown RBP22.87■■□□□ 1.25
VPS29-206ENST00000549578 AP3M2P53677 418 aa22.87■■□□□ 1.25
VPS29-206ENST00000549578 ZACNQ401N2 412 aa22.87■■□□□ 1.25
VPS29-206ENST00000549578 CBWD6Q4V339 395 aa22.87■■□□□ 1.25
VPS29-206ENST00000549578 CBWD3Q5JTY5 395 aa22.87■■□□□ 1.25
VPS29-206ENST00000549578 CBWD5Q5RIA9 395 aa22.87■■□□□ 1.25
VPS29-206ENST00000549578 C15orf39Q6ZRI6 1047 aa22.87■■□□□ 1.25
VPS29-206ENST00000549578 BCL7CQ8WUZ0 217 aaPredicted RBP22.87■■□□□ 1.25
VPS29-206ENST00000549578 DDX27Q96GQ7 796 aaKnown RBP22.87■■□□□ 1.25
VPS29-206ENST00000549578 TGS1Q96RS0 853 aaKnown RBP22.87■■□□□ 1.25
VPS29-206ENST00000549578 CERS4Q9HA82 394 aa22.87■■□□□ 1.25
VPS29-206ENST00000549578 TMEM8AQ9HCN3 771 aa22.87■■□□□ 1.25
VPS29-206ENST00000549578 MARCH5Q9NX47 278 aa22.87■■□□□ 1.25
VPS29-206ENST00000549578 PCDHB12Q9Y5F1 795 aa22.87■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms