RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 CCDC43Q96MW1 224 aaKnown RBP7.79□□□□□ -1.16
DEPDC4-208ENST00000549341 NACC1Q96RE7 527 aa7.79□□□□□ -1.16
DEPDC4-208ENST00000549341 PLIN2Q99541 437 aa7.79□□□□□ -1.16
DEPDC4-208ENST00000549341 EIF2AK1Q9BQI3 630 aaKnown RBP7.79□□□□□ -1.16
DEPDC4-208ENST00000549341 MMTAG2Q9BU76 263 aaKnown RBP7.79□□□□□ -1.16
DEPDC4-208ENST00000549341 TRIM9Q9C026 710 aa7.79□□□□□ -1.16
DEPDC4-208ENST00000549341 TMEM117Q9H0C3 514 aa7.79□□□□□ -1.16
DEPDC4-208ENST00000549341 BLZF1Q9H2G9 400 aa7.79□□□□□ -1.16
DEPDC4-208ENST00000549341 SMARCAD1Q9H4L7 1026 aa7.79□□□□□ -1.16
DEPDC4-208ENST00000549341 AZI2Q9H6S1 392 aa7.79□□□□□ -1.16
DEPDC4-208ENST00000549341 SFXN1Q9H9B4 322 aa7.79□□□□□ -1.16
DEPDC4-208ENST00000549341 ARHGEF3Q9NR81 526 aa7.79□□□□□ -1.16
DEPDC4-208ENST00000549341 TMEM161AQ9NX61 479 aa7.79□□□□□ -1.16
DEPDC4-208ENST00000549341 MAGEC2Q9UBF1 373 aaPredicted RBP7.79□□□□□ -1.16
DEPDC4-208ENST00000549341 KIAA1024Q9UPX6 916 aa7.79□□□□□ -1.16
DEPDC4-208ENST00000549341 NOC2LQ9Y3T9 749 aaKnown RBP7.79□□□□□ -1.16
DEPDC4-208ENST00000549341 UBIAD1Q9Y5Z9 338 aa7.79□□□□□ -1.16
DEPDC4-208ENST00000549341 IGF2RP11717 2491 aa7.79□□□□□ -1.16
DEPDC4-208ENST00000549341 FRYQ5TBA9 3013 aa7.78□□□□□ -1.16
DEPDC4-208ENST00000549341 TTC3P53804 2025 aa7.78□□□□□ -1.16
DEPDC4-208ENST00000549341 GSTTP1A0A1W2PQM5 241 aa7.78□□□□□ -1.16
DEPDC4-208ENST00000549341 RRN3P2A6NIE6 340 aa7.78□□□□□ -1.16
DEPDC4-208ENST00000549341 SOBPA7XYQ1 873 aa7.78□□□□□ -1.16
DEPDC4-208ENST00000549341 WDR64B1ANS9 1081 aa7.78□□□□□ -1.16
DEPDC4-208ENST00000549341 C9IYK1 514 aa7.78□□□□□ -1.16
DEPDC4-208ENST00000549341 NT5C1B-RDH14C9J2C7 533 aa7.78□□□□□ -1.16
DEPDC4-208ENST00000549341 ATP9AO75110 1047 aa7.78□□□□□ -1.16
DEPDC4-208ENST00000549341 PSMD10O75832 226 aa7.78□□□□□ -1.16
DEPDC4-208ENST00000549341 P4HBP07237 508 aaKnown RBP7.78□□□□□ -1.16
DEPDC4-208ENST00000549341 IDEP14735 1019 aa7.78□□□□□ -1.16
DEPDC4-208ENST00000549341 KCNA2P16389 499 aa7.78□□□□□ -1.16
DEPDC4-208ENST00000549341 CDC25BP30305 580 aa7.78□□□□□ -1.16
DEPDC4-208ENST00000549341 GBP2P32456 591 aaPredicted RBP7.78□□□□□ -1.16
DEPDC4-208ENST00000549341 TBC1D8BQ0IIM8 1120 aa7.78□□□□□ -1.16
DEPDC4-208ENST00000549341 MCM6Q14566 821 aa7.78□□□□□ -1.16
DEPDC4-208ENST00000549341 KIZQ2M2Z5 673 aa7.78□□□□□ -1.16
DEPDC4-208ENST00000549341 KLHL10Q6JEL2 608 aa7.78□□□□□ -1.16
DEPDC4-208ENST00000549341 LRRC55Q6ZSA7 311 aa7.78□□□□□ -1.16
DEPDC4-208ENST00000549341 STXBP4Q6ZWJ1 553 aa7.78□□□□□ -1.16
DEPDC4-208ENST00000549341 C1orf210Q8IVY1 113 aa7.78□□□□□ -1.16
DEPDC4-208ENST00000549341 FAM114A1Q8IWE2 563 aa7.78□□□□□ -1.16
DEPDC4-208ENST00000549341 DHX40Q8IX18 779 aaKnown RBP7.78□□□□□ -1.16
DEPDC4-208ENST00000549341 SLC39A11Q8N1S5 342 aa7.78□□□□□ -1.16
DEPDC4-208ENST00000549341 ZNF511Q8NB15 262 aa7.78□□□□□ -1.16
DEPDC4-208ENST00000549341 SUMF1Q8NBK3 374 aa7.78□□□□□ -1.16
DEPDC4-208ENST00000549341 ST13P5Q8NFI4 369 aaPredicted RBP7.78□□□□□ -1.16
DEPDC4-208ENST00000549341 GPR152Q8TDT2 470 aa7.78□□□□□ -1.16
DEPDC4-208ENST00000549341 BAP1Q92560 729 aa7.78□□□□□ -1.16
DEPDC4-208ENST00000549341 STAMQ92783 540 aa7.78□□□□□ -1.16
DEPDC4-208ENST00000549341 SECISBP2LQ93073 1101 aaKnown RBP7.78□□□□□ -1.16
DEPDC4-208ENST00000549341 LENG9Q96B70 501 aa7.78□□□□□ -1.16
DEPDC4-208ENST00000549341 TMEM169Q96HH4 297 aa7.78□□□□□ -1.16
DEPDC4-208ENST00000549341 MRFAP1L1Q96HT8 127 aa7.78□□□□□ -1.16
DEPDC4-208ENST00000549341 DHTKD1Q96HY7 919 aaPredicted RBP7.78□□□□□ -1.16
DEPDC4-208ENST00000549341 PNMA5Q96PV4 448 aa7.78□□□□□ -1.16
DEPDC4-208ENST00000549341 OSMRQ99650 979 aa7.78□□□□□ -1.16
DEPDC4-208ENST00000549341 TSG101Q99816 390 aa7.78□□□□□ -1.16
DEPDC4-208ENST00000549341 SENP7Q9BQF6 1050 aa7.78□□□□□ -1.16
DEPDC4-208ENST00000549341 FOXQ1Q9C009 403 aa7.78□□□□□ -1.16
DEPDC4-208ENST00000549341 AGO4Q9HCK5 861 aaKnown RBP7.78□□□□□ -1.16
DEPDC4-208ENST00000549341 JPH1Q9HDC5 661 aaPredicted RBP7.78□□□□□ -1.16
DEPDC4-208ENST00000549341 RGS18Q9NS28 235 aa7.78□□□□□ -1.16
DEPDC4-208ENST00000549341 KCND2Q9NZV8 630 aa7.78□□□□□ -1.16
DEPDC4-208ENST00000549341 RWDD2AQ9UIY3 292 aa7.78□□□□□ -1.16
DEPDC4-208ENST00000549341 ST3GAL5Q9UNP4 418 aa7.78□□□□□ -1.16
DEPDC4-208ENST00000549341 SMG5Q9UPR3 1016 aaKnown RBP7.78□□□□□ -1.16
DEPDC4-208ENST00000549341 SAMM50Q9Y512 469 aa7.78□□□□□ -1.16
DEPDC4-208ENST00000549341 SQORQ9Y6N5 450 aa7.78□□□□□ -1.16
DEPDC4-208ENST00000549341 SETXQ7Z333 2677 aaKnown RBP7.78□□□□□ -1.16
DEPDC4-208ENST00000549341 KIAA1671Q9BY89 1806 aa7.78□□□□□ -1.16
DEPDC4-208ENST00000549341 ARHGEF35A5YM69 484 aa7.77□□□□□ -1.17
DEPDC4-208ENST00000549341 CHMP2AO43633 222 aa7.77□□□□□ -1.17
DEPDC4-208ENST00000549341 ZC3H11AO75152 810 aaKnown RBP eCLIP7.77□□□□□ -1.17
DEPDC4-208ENST00000549341 LRRN2O75325 713 aa7.77□□□□□ -1.17
DEPDC4-208ENST00000549341 TBCAO75347 108 aaKnown RBP7.77□□□□□ -1.17
DEPDC4-208ENST00000549341 CXCL14O95715 111 aa7.77□□□□□ -1.17
DEPDC4-208ENST00000549341 ADRB1P08588 477 aa7.77□□□□□ -1.17
DEPDC4-208ENST00000549341 MYBP10242 640 aa7.77□□□□□ -1.17
DEPDC4-208ENST00000549341 GAP43P17677 238 aa7.77□□□□□ -1.17
DEPDC4-208ENST00000549341 SDHBP21912 280 aa7.77□□□□□ -1.17
DEPDC4-208ENST00000549341 MSNP26038 577 aaKnown RBP7.77□□□□□ -1.17
DEPDC4-208ENST00000549341 ZNF75DP51815 510 aa7.77□□□□□ -1.17
DEPDC4-208ENST00000549341 GSDMDP57764 484 aa7.77□□□□□ -1.17
DEPDC4-208ENST00000549341 KCNH2Q12809 1159 aa7.77□□□□□ -1.17
DEPDC4-208ENST00000549341 BMS1Q14692 1282 aaKnown RBP7.77□□□□□ -1.17
DEPDC4-208ENST00000549341 COBLL1Q53SF7 1204 aa7.77□□□□□ -1.17
DEPDC4-208ENST00000549341 PPM1JQ5JR12 505 aa7.77□□□□□ -1.17
DEPDC4-208ENST00000549341 ZNF746Q6NUN9 644 aaPredicted RBP7.77□□□□□ -1.17
DEPDC4-208ENST00000549341 MTHFD1LQ6UB35 978 aa7.77□□□□□ -1.17
DEPDC4-208ENST00000549341 FAM228AQ86W67 206 aa7.77□□□□□ -1.17
DEPDC4-208ENST00000549341 GPBP1Q86WP2 473 aa7.77□□□□□ -1.17
DEPDC4-208ENST00000549341 TMEM173Q86WV6 379 aaPredicted RBP7.77□□□□□ -1.17
DEPDC4-208ENST00000549341 CATSPER3Q86XQ3 398 aa7.77□□□□□ -1.17
DEPDC4-208ENST00000549341 TPH2Q8IWU9 490 aa7.77□□□□□ -1.17
DEPDC4-208ENST00000549341 SMAP1Q8IYB5 467 aaPredicted RBP7.77□□□□□ -1.17
DEPDC4-208ENST00000549341 VPS52Q8N1B4 723 aa7.77□□□□□ -1.17
DEPDC4-208ENST00000549341 SYT2Q8N9I0 419 aaPredicted RBP7.77□□□□□ -1.17
DEPDC4-208ENST00000549341 FAM174AQ8TBP5 190 aa7.77□□□□□ -1.17
DEPDC4-208ENST00000549341 NELFBQ8WX92 580 aa7.77□□□□□ -1.17
DEPDC4-208ENST00000549341 CASD1Q96PB1 797 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms