RNA–Protein interactions for RNA: ENST00000543658.5

DDB1-223, Transcript of damage specific DNA binding protein 1, human

TSL 4

Gene DDB1, Length 571 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-223	ENST00000543658	CBWD3	Q5JTY5	395 aa		12.83	□□□□□ -0.36
DDB1-223	ENST00000543658	MIIP	Q5JXC2	388 aa		12.83	□□□□□ -0.36
DDB1-223	ENST00000543658	CLLU1OS	Q5K130	101 aa		12.83	□□□□□ -0.36
DDB1-223	ENST00000543658	CBWD5	Q5RIA9	395 aa		12.83	□□□□□ -0.36
DDB1-223	ENST00000543658	SV2A	Q7L0J3	742 aa		12.83	□□□□□ -0.36
DDB1-223	ENST00000543658	C16orf59	Q7L2K0	433 aa		12.83	□□□□□ -0.36
DDB1-223	ENST00000543658	TRAPPC11	Q7Z392	1133 aa		12.83	□□□□□ -0.36
DDB1-223	ENST00000543658	FBXL13	Q8NEE6	735 aa		12.83	□□□□□ -0.36
DDB1-223	ENST00000543658	OR5B17	Q8NGF7	314 aa		12.83	□□□□□ -0.36
DDB1-223	ENST00000543658	VWCE	Q96DN2	955 aa		12.83	□□□□□ -0.36
DDB1-223	ENST00000543658	UROC1	Q96N76	676 aa		12.83	□□□□□ -0.36
DDB1-223	ENST00000543658	PPP1R10	Q96QC0	940 aa	Known RBP	12.83	□□□□□ -0.36
DDB1-223	ENST00000543658	XPO4	Q9C0E2	1151 aa	Known RBP	12.83	□□□□□ -0.36
DDB1-223	ENST00000543658	RNF19A	Q9NV58	838 aa		12.83	□□□□□ -0.36
DDB1-223	ENST00000543658	PTPRJ	Q12913	1337 aa		12.83	□□□□□ -0.36
DDB1-223	ENST00000543658	FSD2	A1L4K1	749 aa		12.82	□□□□□ -0.36
DDB1-223	ENST00000543658	GTPBP10	A4D1E9	387 aa	Known RBP	12.82	□□□□□ -0.36
DDB1-223	ENST00000543658	CARNS1	A5YM72	827 aa		12.82	□□□□□ -0.36
DDB1-223	ENST00000543658	LRRC10B	A6NIK2	292 aa		12.82	□□□□□ -0.36
DDB1-223	ENST00000543658	GOLGA6L6	A8MZA4	724 aa		12.82	□□□□□ -0.36
DDB1-223	ENST00000543658	PTGES	O14684	152 aa		12.82	□□□□□ -0.36
DDB1-223	ENST00000543658	INPPL1	O15357	1258 aa		12.82	□□□□□ -0.36
DDB1-223	ENST00000543658	DGKI	O75912	1065 aa		12.82	□□□□□ -0.36
DDB1-223	ENST00000543658	C4BPA	P04003	597 aa	Known RBP	12.82	□□□□□ -0.36
DDB1-223	ENST00000543658	POLR2B	P30876	1174 aa	Known RBP	12.82	□□□□□ -0.36
DDB1-223	ENST00000543658	RBP5	P82980	135 aa		12.82	□□□□□ -0.36
DDB1-223	ENST00000543658	MYO1E	Q12965	1108 aa		12.82	□□□□□ -0.36
DDB1-223	ENST00000543658	NCOA4	Q13772	614 aa		12.82	□□□□□ -0.36
DDB1-223	ENST00000543658	BTG3	Q14201	252 aa	Predicted RBP	12.82	□□□□□ -0.36
DDB1-223	ENST00000543658	EXOC3L4	Q17RC7	722 aa		12.82	□□□□□ -0.36
DDB1-223	ENST00000543658	TDRD10	Q5VZ19	366 aa	Known RBP	12.82	□□□□□ -0.36
DDB1-223	ENST00000543658	CMTR2	Q8IYT2	770 aa	Known RBP	12.82	□□□□□ -0.36
DDB1-223	ENST00000543658	PHOSPHO2	Q8TCD6	241 aa		12.82	□□□□□ -0.36
DDB1-223	ENST00000543658	C18orf25	Q96B23	403 aa	Predicted RBP	12.82	□□□□□ -0.36
DDB1-223	ENST00000543658	DDX27	Q96GQ7	796 aa	Known RBP	12.82	□□□□□ -0.36
DDB1-223	ENST00000543658	ZMAT2	Q96NC0	199 aa	Known RBP	12.82	□□□□□ -0.36
DDB1-223	ENST00000543658	CASD1	Q96PB1	797 aa		12.82	□□□□□ -0.36
DDB1-223	ENST00000543658	RTN4	Q9NQC3	1192 aa	Known RBP	12.82	□□□□□ -0.36
DDB1-223	ENST00000543658	TBC1D13	Q9NVG8	400 aa		12.82	□□□□□ -0.36
DDB1-223	ENST00000543658	TUBGCP4	Q9UGJ1	667 aa		12.82	□□□□□ -0.36
DDB1-223	ENST00000543658	MKI67	P46013	3256 aa	Known RBP	12.82	□□□□□ -0.36
DDB1-223	ENST00000543658	CASTOR2	A6NHX0	329 aa		12.81	□□□□□ -0.36
DDB1-223	ENST00000543658		H0YGN5	161 aa		12.81	□□□□□ -0.36
DDB1-223	ENST00000543658	PMM2	O15305	246 aa		12.81	□□□□□ -0.36
DDB1-223	ENST00000543658	MEFV	O15553	781 aa	Predicted RBP	12.81	□□□□□ -0.36
DDB1-223	ENST00000543658	ZC3H11A	O75152	810 aa	Known RBP eCLIP	12.81	□□□□□ -0.36
DDB1-223	ENST00000543658	HLA-DRA	P01903	254 aa		12.81	□□□□□ -0.36
DDB1-223	ENST00000543658	TPM1	P09493	284 aa		12.81	□□□□□ -0.36
DDB1-223	ENST00000543658	P4HA1	P13674	534 aa		12.81	□□□□□ -0.36
DDB1-223	ENST00000543658	PNPLA4	P41247	253 aa		12.81	□□□□□ -0.36
DDB1-223	ENST00000543658	OR1G1	P47890	313 aa		12.81	□□□□□ -0.36
DDB1-223	ENST00000543658	RGS19	P49795	217 aa		12.81	□□□□□ -0.36
DDB1-223	ENST00000543658	GATM	P50440	423 aa		12.81	□□□□□ -0.36
DDB1-223	ENST00000543658	MLLT1	Q03111	559 aa	Predicted RBP	12.81	□□□□□ -0.36
DDB1-223	ENST00000543658	ZNF699	Q32M78	642 aa		12.81	□□□□□ -0.36
DDB1-223	ENST00000543658	C1orf220	Q5T0J3	134 aa		12.81	□□□□□ -0.36
DDB1-223	ENST00000543658	DRC7	Q8IY82	874 aa		12.81	□□□□□ -0.36
DDB1-223	ENST00000543658	C1orf127	Q8N9H9	656 aa		12.81	□□□□□ -0.36
DDB1-223	ENST00000543658	NEK11	Q8NG66	645 aa		12.81	□□□□□ -0.36
DDB1-223	ENST00000543658	ZNF516	Q92618	1163 aa		12.81	□□□□□ -0.36
DDB1-223	ENST00000543658	NAP1L5	Q96NT1	182 aa	Predicted RBP	12.81	□□□□□ -0.36
DDB1-223	ENST00000543658	CRACR2A	Q9BSW2	395 aa		12.81	□□□□□ -0.36
DDB1-223	ENST00000543658	LSM14B	Q9BX40	385 aa	Known RBP	12.81	□□□□□ -0.36
DDB1-223	ENST00000543658	CXCL16	Q9H2A7	254 aa		12.81	□□□□□ -0.36
DDB1-223	ENST00000543658	GOLGA2P5	Q9HBQ8	144 aa		12.81	□□□□□ -0.36
DDB1-223	ENST00000543658	RAB20	Q9NX57	234 aa		12.81	□□□□□ -0.36
DDB1-223	ENST00000543658	MIOS	Q9NXC5	875 aa		12.81	□□□□□ -0.36
DDB1-223	ENST00000543658	CXXC1	Q9P0U4	656 aa	Predicted RBP	12.81	□□□□□ -0.36
DDB1-223	ENST00000543658	PLAGL2	Q9UPG8	496 aa		12.81	□□□□□ -0.36
DDB1-223	ENST00000543658	AGAP1	Q9UPQ3	857 aa		12.81	□□□□□ -0.36
DDB1-223	ENST00000543658	INSL6	Q9Y581	213 aa		12.81	□□□□□ -0.36
DDB1-223	ENST00000543658	NUB1	Q9Y5A7	615 aa		12.81	□□□□□ -0.36
DDB1-223	ENST00000543658	PODXL	O00592	558 aa		12.8	□□□□□ -0.36
DDB1-223	ENST00000543658	TLL1	O43897	1013 aa		12.8	□□□□□ -0.36
DDB1-223	ENST00000543658	GJB5	O95377	273 aa		12.8	□□□□□ -0.36
DDB1-223	ENST00000543658	LRPAP1	P30533	357 aa		12.8	□□□□□ -0.36
DDB1-223	ENST00000543658	ATIC	P31939	592 aa		12.8	□□□□□ -0.36
DDB1-223	ENST00000543658	RPL9	P32969	192 aa	Known RBP	12.8	□□□□□ -0.36
DDB1-223	ENST00000543658	TAF6	P49848	677 aa		12.8	□□□□□ -0.36
DDB1-223	ENST00000543658	ZNF75D	P51815	510 aa		12.8	□□□□□ -0.36
DDB1-223	ENST00000543658	GUCY2F	P51841	1108 aa		12.8	□□□□□ -0.36
DDB1-223	ENST00000543658	MCCD1	P59942	119 aa	Predicted RBP	12.8	□□□□□ -0.36
DDB1-223	ENST00000543658	TNNC1	P63316	161 aa		12.8	□□□□□ -0.36
DDB1-223	ENST00000543658	NR1I3	Q14994	352 aa		12.8	□□□□□ -0.36
DDB1-223	ENST00000543658	SYCP1	Q15431	976 aa		12.8	□□□□□ -0.36
DDB1-223	ENST00000543658	ZBTB6	Q15916	424 aa		12.8	□□□□□ -0.36
DDB1-223	ENST00000543658	SV2C	Q496J9	727 aa		12.8	□□□□□ -0.36
DDB1-223	ENST00000543658	EPC2	Q52LR7	807 aa		12.8	□□□□□ -0.36
DDB1-223	ENST00000543658	ZNF667	Q5HYK9	610 aa		12.8	□□□□□ -0.36
DDB1-223	ENST00000543658	C15orf39	Q6ZRI6	1047 aa		12.8	□□□□□ -0.36
DDB1-223	ENST00000543658	APTX	Q7Z2E3	356 aa	Known RBP	12.8	□□□□□ -0.36
DDB1-223	ENST00000543658	TMCO2	Q7Z6W1	182 aa	Predicted RBP	12.8	□□□□□ -0.36
DDB1-223	ENST00000543658	HERC6	Q8IVU3	1022 aa		12.8	□□□□□ -0.36
DDB1-223	ENST00000543658	LRRC52	Q8N7C0	313 aa		12.8	□□□□□ -0.36
DDB1-223	ENST00000543658	GSTCD	Q8NEC7	633 aa		12.8	□□□□□ -0.36
DDB1-223	ENST00000543658	TAS1R2	Q8TE23	839 aa		12.8	□□□□□ -0.36
DDB1-223	ENST00000543658	TAF4B	Q92750	862 aa		12.8	□□□□□ -0.36
DDB1-223	ENST00000543658	NT5C1B	Q96P26	610 aa		12.8	□□□□□ -0.36
DDB1-223	ENST00000543658	ERGIC2	Q96RQ1	377 aa		12.8	□□□□□ -0.36
DDB1-223	ENST00000543658	TMEM175	Q9BSA9	504 aa		12.8	□□□□□ -0.36

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