RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 MROH8Q9H579 483 aa17.47■□□□□ 0.39
COL4A1-204ENST00000543140 PSD3Q9NYI0 1048 aa17.47■□□□□ 0.39
COL4A1-204ENST00000543140 ANAPC7Q9UJX3 599 aa17.47■□□□□ 0.39
COL4A1-204ENST00000543140 UTP11Q9Y3A2 253 aaKnown RBP17.47■□□□□ 0.39
COL4A1-204ENST00000543140 TCRBV7S2A1N4TA0A589 114 aa17.46■□□□□ 0.39
COL4A1-204ENST00000543140 FAM189A1O60320 539 aa17.46■□□□□ 0.39
COL4A1-204ENST00000543140 CLTAP09496 248 aa17.46■□□□□ 0.39
COL4A1-204ENST00000543140 FLT3P36888 993 aa17.46■□□□□ 0.39
COL4A1-204ENST00000543140 CLCN3P51790 818 aa17.46■□□□□ 0.39
COL4A1-204ENST00000543140 IGBP1P78318 339 aa17.46■□□□□ 0.39
COL4A1-204ENST00000543140 DR1Q01658 176 aa17.46■□□□□ 0.39
COL4A1-204ENST00000543140 ZBTB8OSQ8IWT0 167 aa17.46■□□□□ 0.39
COL4A1-204ENST00000543140 ZDHHC14Q8IZN3 488 aa17.46■□□□□ 0.39
COL4A1-204ENST00000543140 SLC10A4Q96EP9 437 aa17.46■□□□□ 0.39
COL4A1-204ENST00000543140 SH3GL2Q99962 352 aa17.46■□□□□ 0.39
COL4A1-204ENST00000543140 MTMR12Q9C0I1 747 aa17.46■□□□□ 0.39
COL4A1-204ENST00000543140 INO80B-WBP1J3KQ70 363 aa17.46■□□□□ 0.38
COL4A1-204ENST00000543140 B4GALT5O43286 388 aa17.46■□□□□ 0.38
COL4A1-204ENST00000543140 OPA1O60313 960 aa17.46■□□□□ 0.38
COL4A1-204ENST00000543140 MAPK4P31152 587 aa17.46■□□□□ 0.38
COL4A1-204ENST00000543140 SNAPC2Q13487 334 aa17.46■□□□□ 0.38
COL4A1-204ENST00000543140 C18orf8Q96DM3 657 aa17.46■□□□□ 0.38
COL4A1-204ENST00000543140 L3MBTL3Q96JM7 780 aaPredicted RBP17.46■□□□□ 0.38
COL4A1-204ENST00000543140 INO80BQ9C086 356 aaPredicted RBP17.46■□□□□ 0.38
COL4A1-204ENST00000543140 RNPEPQ9H4A4 650 aa17.46■□□□□ 0.38
COL4A1-204ENST00000543140 GNA15P30679 374 aa17.45■□□□□ 0.38
COL4A1-204ENST00000543140 NSFP46459 744 aaKnown RBP17.45■□□□□ 0.38
COL4A1-204ENST00000543140 BPIFB4P59827 614 aa17.45■□□□□ 0.38
COL4A1-204ENST00000543140 TMEM132AQ24JP5 1023 aa17.45■□□□□ 0.38
COL4A1-204ENST00000543140 DNAJC21Q5F1R6 531 aaKnown RBP17.45■□□□□ 0.38
COL4A1-204ENST00000543140 DAB2IPQ5VWQ8 1189 aa17.45■□□□□ 0.38
COL4A1-204ENST00000543140 CDCA2Q69YH5 1023 aaPredicted RBP17.45■□□□□ 0.38
COL4A1-204ENST00000543140 EFCAB12Q6NXP0 572 aa17.45■□□□□ 0.38
COL4A1-204ENST00000543140 BRSK2Q8IWQ3 736 aa17.45■□□□□ 0.38
COL4A1-204ENST00000543140 THNSL1Q8IYQ7 743 aa17.45■□□□□ 0.38
COL4A1-204ENST00000543140 RBBP8NLQ8NC74 664 aaPredicted RBP17.45■□□□□ 0.38
COL4A1-204ENST00000543140 PPP1R16BQ96T49 567 aa17.45■□□□□ 0.38
COL4A1-204ENST00000543140 IGKV6-21A0A0C4DH24 114 aa17.45■□□□□ 0.38
COL4A1-204ENST00000543140 BHMG1C9JSJ3 638 aaPredicted RBP17.45■□□□□ 0.38
COL4A1-204ENST00000543140 CSDE1O75534 798 aaKnown RBP17.45■□□□□ 0.38
COL4A1-204ENST00000543140 CTNNA1P35221 906 aaKnown RBP17.45■□□□□ 0.38
COL4A1-204ENST00000543140 TTLL4Q14679 1199 aa17.45■□□□□ 0.38
COL4A1-204ENST00000543140 TTMPQ5BVD1 217 aa17.45■□□□□ 0.38
COL4A1-204ENST00000543140 SEL1L2Q5TEA6 688 aa17.45■□□□□ 0.38
COL4A1-204ENST00000543140 KCTD16Q68DU8 428 aa17.45■□□□□ 0.38
COL4A1-204ENST00000543140 ARMCX2Q7L311 632 aa17.45■□□□□ 0.38
COL4A1-204ENST00000543140 MREGQ8N565 214 aa17.45■□□□□ 0.38
COL4A1-204ENST00000543140 FAM76AQ8TAV0 307 aa17.45■□□□□ 0.38
COL4A1-204ENST00000543140 SMARCAD1Q9H4L7 1026 aa17.45■□□□□ 0.38
COL4A1-204ENST00000543140 PCDHA3Q9Y5H8 950 aa17.45■□□□□ 0.38
COL4A1-204ENST00000543140 MYL6P60660 151 aa17.44■□□□□ 0.38
COL4A1-204ENST00000543140 PRELID2Q8N945 189 aa17.44■□□□□ 0.38
COL4A1-204ENST00000543140 C11orf70Q9BRQ4 267 aa17.44■□□□□ 0.38
COL4A1-204ENST00000543140 MROH7Q68CQ1 1323 aa17.44■□□□□ 0.38
COL4A1-204ENST00000543140 CCDC66A2RUB6 948 aa17.44■□□□□ 0.38
COL4A1-204ENST00000543140 OGTO15294 1046 aa17.44■□□□□ 0.38
COL4A1-204ENST00000543140 THAP12O43422 761 aa17.44■□□□□ 0.38
COL4A1-204ENST00000543140 CD58P19256 250 aa17.44■□□□□ 0.38
COL4A1-204ENST00000543140 HSPA9P38646 679 aaKnown RBP17.44■□□□□ 0.38
COL4A1-204ENST00000543140 TFAMQ00059 246 aaKnown RBP17.44■□□□□ 0.38
COL4A1-204ENST00000543140 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.44■□□□□ 0.38
COL4A1-204ENST00000543140 ZNF677Q86XU0 584 aa17.44■□□□□ 0.38
COL4A1-204ENST00000543140 CEP120Q8N960 986 aa17.44■□□□□ 0.38
COL4A1-204ENST00000543140 MORC4Q8TE76 937 aa17.44■□□□□ 0.38
COL4A1-204ENST00000543140 MAGOHBQ96A72 148 aaKnown RBP17.44■□□□□ 0.38
COL4A1-204ENST00000543140 IMPG2Q9BZV3 1241 aa17.44■□□□□ 0.38
COL4A1-204ENST00000543140 MINDY3Q9H8M7 445 aa17.44■□□□□ 0.38
COL4A1-204ENST00000543140 CLEC11AQ9Y240 323 aa17.44■□□□□ 0.38
COL4A1-204ENST00000543140 PLAAQ9Y263 795 aa17.44■□□□□ 0.38
COL4A1-204ENST00000543140 MGAMO43451 1857 aa17.43■□□□□ 0.38
COL4A1-204ENST00000543140 GOLGA8KD6RF30 607 aa17.43■□□□□ 0.38
COL4A1-204ENST00000543140 ABLIM1O14639 778 aa17.43■□□□□ 0.38
COL4A1-204ENST00000543140 CYP1A1P04798 512 aaPredicted RBP17.43■□□□□ 0.38
COL4A1-204ENST00000543140 PPFIA1Q13136 1202 aa17.43■□□□□ 0.38
COL4A1-204ENST00000543140 ZNF394Q53GI3 561 aa17.43■□□□□ 0.38
COL4A1-204ENST00000543140 LDLRAD1Q5T700 205 aa17.43■□□□□ 0.38
COL4A1-204ENST00000543140 SH2D3CQ8N5H7 860 aa17.43■□□□□ 0.38
COL4A1-204ENST00000543140 GAS2O43903 313 aaKnown RBP17.43■□□□□ 0.38
COL4A1-204ENST00000543140 POTEJP0CG39 1038 aa17.43■□□□□ 0.38
COL4A1-204ENST00000543140 TBXAS1P24557 533 aaPredicted RBP17.43■□□□□ 0.38
COL4A1-204ENST00000543140 HSD17B3P37058 310 aa17.43■□□□□ 0.38
COL4A1-204ENST00000543140 RWDD2BP57060 319 aa17.43■□□□□ 0.38
COL4A1-204ENST00000543140 CENPCQ03188 943 aa17.43■□□□□ 0.38
COL4A1-204ENST00000543140 EEF1DP3Q658K8 133 aa17.43■□□□□ 0.38
COL4A1-204ENST00000543140 TTC27Q6P3X3 843 aa17.43■□□□□ 0.38
COL4A1-204ENST00000543140 WDR49Q8IV35 697 aa17.43■□□□□ 0.38
COL4A1-204ENST00000543140 ABRAQ8N0Z2 381 aa17.43■□□□□ 0.38
COL4A1-204ENST00000543140 EIF1ADQ8N9N8 165 aaKnown RBP17.43■□□□□ 0.38
COL4A1-204ENST00000543140 OR2W6PQ8NHA6 318 aa17.43■□□□□ 0.38
COL4A1-204ENST00000543140 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP17.43■□□□□ 0.388e-7■■■■■ 60.1
COL4A1-204ENST00000543140 ASB14A6NK59 587 aa17.42■□□□□ 0.38
COL4A1-204ENST00000543140 PHF2O75151 1096 aa17.42■□□□□ 0.38
COL4A1-204ENST00000543140 IQCF3P0C7M6 154 aa17.42■□□□□ 0.38
COL4A1-204ENST00000543140 MCL1Q07820 350 aa17.42■□□□□ 0.38
COL4A1-204ENST00000543140 ZNF568Q3ZCX4 644 aa17.42■□□□□ 0.38
COL4A1-204ENST00000543140 ATF7IP2Q5U623 682 aa17.42■□□□□ 0.38
COL4A1-204ENST00000543140 MON1BQ7L1V2 547 aa17.42■□□□□ 0.38
COL4A1-204ENST00000543140 SLC13A5Q86YT5 568 aaPredicted RBP17.42■□□□□ 0.38
COL4A1-204ENST00000543140 JAMLQ86YT9 394 aa17.42■□□□□ 0.38
COL4A1-204ENST00000543140 GPRC5AQ8NFJ5 357 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms