RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 KANSL1LA0AUZ9 987 aa9.13□□□□□ -0.95
CHD4-208ENST00000540960 FRMD3A2A2Y4 597 aa9.13□□□□□ -0.95
CHD4-208ENST00000540960 LGALS16A8MUM7 142 aa9.13□□□□□ -0.95
CHD4-208ENST00000540960 AKR1B15C9JRZ8 316 aaPredicted RBP9.13□□□□□ -0.95
CHD4-208ENST00000540960 CETN3O15182 167 aa9.13□□□□□ -0.95
CHD4-208ENST00000540960 EIF3DO15371 548 aaKnown RBP eCLIP9.13□□□□□ -0.954e-6■□□□□ 11.1
CHD4-208ENST00000540960 ARHGAP6O43182 974 aa9.13□□□□□ -0.95
CHD4-208ENST00000540960 HRO43593 1189 aa9.13□□□□□ -0.95
CHD4-208ENST00000540960 STX10O60499 249 aa9.13□□□□□ -0.95
CHD4-208ENST00000540960 PPFIA4O75335 1185 aa9.13□□□□□ -0.95
CHD4-208ENST00000540960 OFD1O75665 1012 aa9.13□□□□□ -0.95
CHD4-208ENST00000540960 EIF3JO75822 258 aaKnown RBP9.13□□□□□ -0.95
CHD4-208ENST00000540960 FAM13AO94988 1023 aa9.13□□□□□ -0.95
CHD4-208ENST00000540960 NR3C2P08235 984 aa9.13□□□□□ -0.95
CHD4-208ENST00000540960 TGFB3P10600 412 aa9.13□□□□□ -0.95
CHD4-208ENST00000540960 CYP11B2P19099 503 aa9.13□□□□□ -0.95
CHD4-208ENST00000540960 QARSP47897 775 aaKnown RBP9.13□□□□□ -0.95
CHD4-208ENST00000540960 NOVA1P51513 510 aaKnown RBP9.13□□□□□ -0.95
CHD4-208ENST00000540960 SLC12A3P55017 1021 aa9.13□□□□□ -0.95
CHD4-208ENST00000540960 PSMC5P62195 406 aa9.13□□□□□ -0.95
CHD4-208ENST00000540960 PLCB3Q01970 1234 aa9.13□□□□□ -0.95
CHD4-208ENST00000540960 ZNF252P-AS1Q0IIN9 211 aa9.13□□□□□ -0.95
CHD4-208ENST00000540960 MYBPC2Q14324 1141 aa9.13□□□□□ -0.95
CHD4-208ENST00000540960 UBXN2BQ14CS0 331 aa9.13□□□□□ -0.95
CHD4-208ENST00000540960 STXBP2Q15833 593 aa9.13□□□□□ -0.95
CHD4-208ENST00000540960 DNTTIP2Q5QJE6 756 aaKnown RBP9.13□□□□□ -0.95
CHD4-208ENST00000540960 TTI2Q6NXR4 508 aa9.13□□□□□ -0.95
CHD4-208ENST00000540960 TPH2Q8IWU9 490 aa9.13□□□□□ -0.95
CHD4-208ENST00000540960 MYADMQ96S97 322 aa9.13□□□□□ -0.95
CHD4-208ENST00000540960 DDX23Q9BUQ8 820 aaKnown RBP9.13□□□□□ -0.95
CHD4-208ENST00000540960 EDEM3Q9BZQ6 932 aa9.13□□□□□ -0.95
CHD4-208ENST00000540960 NUCKS1Q9H1E3 243 aaKnown RBP9.13□□□□□ -0.95
CHD4-208ENST00000540960 BCAS3Q9H6U6 928 aa9.13□□□□□ -0.95
CHD4-208ENST00000540960 C17orf75Q9HAS0 396 aa9.13□□□□□ -0.95
CHD4-208ENST00000540960 METTL14Q9HCE5 456 aaKnown RBP9.13□□□□□ -0.95
CHD4-208ENST00000540960 AGO4Q9HCK5 861 aaKnown RBP9.13□□□□□ -0.95
CHD4-208ENST00000540960 OLFML3Q9NRN5 406 aa9.13□□□□□ -0.95
CHD4-208ENST00000540960 ZNHIT6Q9NWK9 470 aaKnown RBP9.13□□□□□ -0.95
CHD4-208ENST00000540960 DAAM1Q9Y4D1 1078 aa9.13□□□□□ -0.95
CHD4-208ENST00000540960 PCDHB13Q9Y5F0 798 aa9.13□□□□□ -0.95
CHD4-208ENST00000540960 KALRNO60229 2985 aa9.13□□□□□ -0.95
CHD4-208ENST00000540960 CFAP46Q8IYW2 2715 aa9.12□□□□□ -0.95
CHD4-208ENST00000540960 H3BRB1 525 aa9.12□□□□□ -0.95
CHD4-208ENST00000540960 PDXKO00764 312 aa9.12□□□□□ -0.95
CHD4-208ENST00000540960 MED24O75448 989 aa9.12□□□□□ -0.95
CHD4-208ENST00000540960 SLITRK3O94933 977 aa9.12□□□□□ -0.95
CHD4-208ENST00000540960 PSAPP07602 524 aa9.12□□□□□ -0.95
CHD4-208ENST00000540960 SPATA31C1P0DKV0 1188 aa9.12□□□□□ -0.95
CHD4-208ENST00000540960 ATP1A3P13637 1013 aa9.12□□□□□ -0.95
CHD4-208ENST00000540960 CD44P16070 742 aaKnown RBP9.12□□□□□ -0.95
CHD4-208ENST00000540960 GUCY2CP25092 1073 aa9.12□□□□□ -0.95
CHD4-208ENST00000540960 GBP2P32456 591 aaPredicted RBP9.12□□□□□ -0.95
CHD4-208ENST00000540960 MTIF2P46199 727 aaKnown RBP9.12□□□□□ -0.95
CHD4-208ENST00000540960 COPB1P53618 953 aaKnown RBP9.12□□□□□ -0.95
CHD4-208ENST00000540960 STX17P56962 302 aa9.12□□□□□ -0.95
CHD4-208ENST00000540960 GPC5P78333 572 aa9.12□□□□□ -0.95
CHD4-208ENST00000540960 ADAM17P78536 824 aa9.12□□□□□ -0.95
CHD4-208ENST00000540960 EHHADHQ08426 723 aa9.12□□□□□ -0.95
CHD4-208ENST00000540960 LAMC2Q13753 1193 aa9.12□□□□□ -0.95
CHD4-208ENST00000540960 SIM2Q14190 667 aaPredicted RBP9.12□□□□□ -0.95
CHD4-208ENST00000540960 PGM5Q15124 567 aa9.12□□□□□ -0.95
CHD4-208ENST00000540960 FIGNQ5HY92 759 aa9.12□□□□□ -0.95
CHD4-208ENST00000540960 KIAA1211LQ6NV74 962 aa9.12□□□□□ -0.95
CHD4-208ENST00000540960 MIS18BP1Q6P0N0 1132 aa9.12□□□□□ -0.95
CHD4-208ENST00000540960 LRRC55Q6ZSA7 311 aa9.12□□□□□ -0.95
CHD4-208ENST00000540960 HS2ST1Q7LGA3 356 aa9.12□□□□□ -0.95
CHD4-208ENST00000540960 DYMQ7RTS9 669 aa9.12□□□□□ -0.95
CHD4-208ENST00000540960 PROSER1Q86XN7 944 aa9.12□□□□□ -0.95
CHD4-208ENST00000540960 C4orf19Q8IY42 314 aa9.12□□□□□ -0.95
CHD4-208ENST00000540960 SLC22A17Q8WUG5 538 aa9.12□□□□□ -0.95
CHD4-208ENST00000540960 AUTS2Q8WXX7 1259 aa9.12□□□□□ -0.95
CHD4-208ENST00000540960 BBXQ8WY36 941 aaPredicted RBP9.12□□□□□ -0.95
CHD4-208ENST00000540960 TBC1D5Q92609 795 aa9.12□□□□□ -0.95
CHD4-208ENST00000540960 DNAJC19Q96DA6 116 aa9.12□□□□□ -0.95
CHD4-208ENST00000540960 PRIMPOLQ96LW4 560 aa9.12□□□□□ -0.95
CHD4-208ENST00000540960 DRC1Q96MC2 740 aa9.12□□□□□ -0.95
CHD4-208ENST00000540960 TAAR1Q96RJ0 339 aa9.12□□□□□ -0.95
CHD4-208ENST00000540960 SRRTQ9BXP5 876 aaKnown RBP9.12□□□□□ -0.95
CHD4-208ENST00000540960 HSD3B7Q9H2F3 369 aa9.12□□□□□ -0.95
CHD4-208ENST00000540960 TUT1Q9H6E5 874 aaKnown RBP9.12□□□□□ -0.95
CHD4-208ENST00000540960 PARVGQ9HBI0 331 aa9.12□□□□□ -0.95
CHD4-208ENST00000540960 SAMSN1Q9NSI8 373 aaKnown RBP9.12□□□□□ -0.95
CHD4-208ENST00000540960 LARSQ9P2J5 1176 aaKnown RBP9.12□□□□□ -0.95
CHD4-208ENST00000540960 PUF60Q9UHX1 559 aaKnown RBP9.12□□□□□ -0.95
CHD4-208ENST00000540960 GDAQ9Y2T3 454 aa9.12□□□□□ -0.95
CHD4-208ENST00000540960 SAMM50Q9Y512 469 aa9.12□□□□□ -0.95
CHD4-208ENST00000540960 PAXBP1Q9Y5B6 917 aa9.12□□□□□ -0.95
CHD4-208ENST00000540960 LAMA1P25391 3075 aa9.12□□□□□ -0.95
CHD4-208ENST00000540960 PHLPP2Q6ZVD8 1323 aa9.11□□□□□ -0.95
CHD4-208ENST00000540960 DOCK5Q9H7D0 1870 aa9.11□□□□□ -0.95
CHD4-208ENST00000540960 SPTA1P02549 2419 aa9.11□□□□□ -0.95
CHD4-208ENST00000540960 DOCK6Q96HP0 2047 aa9.11□□□□□ -0.95
CHD4-208ENST00000540960 IPO7O95373 1038 aaKnown RBP9.11□□□□□ -0.95
CHD4-208ENST00000540960 STAG3L1P0CL83 205 aa9.11□□□□□ -0.95
CHD4-208ENST00000540960 ITGB5P18084 799 aa9.11□□□□□ -0.95
CHD4-208ENST00000540960 CA8P35219 290 aa9.11□□□□□ -0.95
CHD4-208ENST00000540960 SP2Q02086 613 aa9.11□□□□□ -0.95
CHD4-208ENST00000540960 CACNB1Q02641 598 aaPredicted RBP9.11□□□□□ -0.95
CHD4-208ENST00000540960 UBXN1Q04323 297 aa9.11□□□□□ -0.95
CHD4-208ENST00000540960 STK4Q13043 487 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms